HEADER TRANSFERASE 27-SEP-10 3P08 TITLE CRYSTAL STRUCTURE OF THE HUMAN BTK KINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE BTK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 393-659; COMPND 5 SYNONYM: BRUTON TYROSINE KINASE, AGAMMAGLOBULINAEMIA TYROSINE KINASE, COMPND 6 ATK, B-CELL PROGENITOR KINASE, BPK; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGMX1, ATK, BPK, BTK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBACGUS KEYWDS B-CELL, ALPHA/BETA, KINASE, PHOSPHORYLATION, CYTOSOL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.L.YU,S.G.HYMOWITZ REVDAT 3 06-SEP-23 3P08 1 REMARK REVDAT 2 24-JAN-18 3P08 1 JRNL REVDAT 1 03-NOV-10 3P08 0 JRNL AUTH J.DI PAOLO,T.HUANG,M.BALAZS,J.BARBOSA,K.H.BARCK,B.BRAVO, JRNL AUTH 2 R.A.D.CARANO,J.DARROW,D.R.DAVIES,L.E.DEFORGE,L.DIEHL, JRNL AUTH 3 R.FERRANDO,S.L.GALLION,A.M.GIANETTI,P.GRIBLING,V.HUREZ, JRNL AUTH 4 S.G.HYMOWITZ,R.JONES,J.E.KROPF,W.P.LEE,P.M.MACIEJEWSKI, JRNL AUTH 5 S.A.MITCHELL,H.RONG,B.L.STAKER,J.A.WHITNEY,S.YEH,W.YOUNG, JRNL AUTH 6 C.YU,J.ZHANG,K.REIF,K.S.CURRIE JRNL TITL A NOVEL, SPECIFIC BTK INHIBITOR ANTAGONIZES BCR AND FCGR JRNL TITL 2 SIGNALING AND SUPPRESSES INFLAMMATORY ARTHRITIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 23279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2542 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1319 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4195 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -1.67000 REMARK 3 B33 (A**2) : 1.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.286 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.402 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4293 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5782 ; 1.180 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 6.820 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;31.993 ;24.058 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 803 ;15.535 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;19.564 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 613 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3213 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1985 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2910 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 186 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.233 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2631 ; 2.429 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4094 ; 3.588 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1948 ; 2.524 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1688 ; 3.622 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 395 A 540 1 REMARK 3 1 B 395 B 540 1 REMARK 3 2 A 560 A 598 4 REMARK 3 2 B 560 B 598 4 REMARK 3 3 A 599 A 615 6 REMARK 3 3 B 599 B 615 6 REMARK 3 4 A 616 A 658 4 REMARK 3 4 B 616 B 658 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1195 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 689 ; 0.33 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 137 ; 1.44 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 1195 ; 0.09 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 689 ; 0.82 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 137 ; 3.28 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 394 A 544 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3674 25.9784 15.0869 REMARK 3 T TENSOR REMARK 3 T11: -0.2317 T22: -0.1091 REMARK 3 T33: -0.0967 T12: 0.0050 REMARK 3 T13: -0.0387 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 2.7492 L22: 2.3670 REMARK 3 L33: 3.4993 L12: -1.4788 REMARK 3 L13: -0.6551 L23: 0.9978 REMARK 3 S TENSOR REMARK 3 S11: 0.0548 S12: -0.1605 S13: 0.1912 REMARK 3 S21: -0.1038 S22: -0.0751 S23: 0.3122 REMARK 3 S31: -0.2970 S32: -0.2095 S33: 0.0203 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 558 A 598 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6147 14.7554 15.6416 REMARK 3 T TENSOR REMARK 3 T11: -0.2902 T22: -0.1207 REMARK 3 T33: -0.1757 T12: 0.0408 REMARK 3 T13: -0.0227 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 5.6270 L22: 6.4422 REMARK 3 L33: 2.4533 L12: 3.3070 REMARK 3 L13: -0.2908 L23: 0.5022 REMARK 3 S TENSOR REMARK 3 S11: 0.3175 S12: -0.2387 S13: 0.0904 REMARK 3 S21: 0.2778 S22: -0.0962 S23: -0.3426 REMARK 3 S31: 0.2085 S32: 0.2495 S33: -0.2213 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 599 A 615 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1534 6.5414 21.8611 REMARK 3 T TENSOR REMARK 3 T11: 0.0314 T22: -0.0072 REMARK 3 T33: -0.0212 T12: 0.0688 REMARK 3 T13: -0.2779 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 6.7151 L22: 14.7943 REMARK 3 L33: 13.1606 L12: -6.2490 REMARK 3 L13: -3.6799 L23: -2.8774 REMARK 3 S TENSOR REMARK 3 S11: -0.4432 S12: -0.6791 S13: -0.2159 REMARK 3 S21: 1.9282 S22: 0.4979 S23: -1.2996 REMARK 3 S31: -0.0522 S32: 0.9618 S33: -0.0547 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 616 A 658 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1379 8.7668 3.2709 REMARK 3 T TENSOR REMARK 3 T11: -0.1371 T22: -0.1481 REMARK 3 T33: -0.1844 T12: 0.0741 REMARK 3 T13: 0.0279 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.3994 L22: 7.8636 REMARK 3 L33: 4.5451 L12: -0.0322 REMARK 3 L13: -0.5950 L23: 0.4209 REMARK 3 S TENSOR REMARK 3 S11: 0.2385 S12: 0.3803 S13: -0.1923 REMARK 3 S21: -0.8458 S22: 0.0186 S23: -0.2308 REMARK 3 S31: 0.3502 S32: 0.1532 S33: -0.2571 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 395 B 540 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8187 22.0506 42.6132 REMARK 3 T TENSOR REMARK 3 T11: 0.1173 T22: -0.0750 REMARK 3 T33: -0.0777 T12: -0.1697 REMARK 3 T13: 0.0212 T23: 0.0651 REMARK 3 L TENSOR REMARK 3 L11: 1.6778 L22: 3.1420 REMARK 3 L33: 3.1304 L12: 1.6863 REMARK 3 L13: 0.5034 L23: 1.9137 REMARK 3 S TENSOR REMARK 3 S11: 0.2005 S12: -0.1285 S13: -0.0787 REMARK 3 S21: 0.7894 S22: -0.2788 S23: 0.3147 REMARK 3 S31: 0.4875 S32: -0.2576 S33: 0.0782 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 560 B 598 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6407 37.6965 42.7847 REMARK 3 T TENSOR REMARK 3 T11: -0.0860 T22: -0.1157 REMARK 3 T33: -0.2037 T12: -0.0588 REMARK 3 T13: -0.0782 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 3.3696 L22: 8.5439 REMARK 3 L33: 3.5806 L12: 0.3058 REMARK 3 L13: 0.0717 L23: 0.8137 REMARK 3 S TENSOR REMARK 3 S11: 0.2974 S12: 0.0385 S13: -0.0563 REMARK 3 S21: 0.3897 S22: -0.1863 S23: -0.5740 REMARK 3 S31: 0.4009 S32: 0.2436 S33: -0.1112 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 599 B 615 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5527 45.9991 34.9790 REMARK 3 T TENSOR REMARK 3 T11: -0.1001 T22: -0.0933 REMARK 3 T33: -0.1288 T12: 0.0104 REMARK 3 T13: 0.1205 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 6.4714 L22: 10.2501 REMARK 3 L33: 12.1413 L12: -1.5455 REMARK 3 L13: 3.8776 L23: 2.2574 REMARK 3 S TENSOR REMARK 3 S11: 0.3590 S12: 0.6766 S13: 0.1951 REMARK 3 S21: -0.6448 S22: 0.1454 S23: -0.8516 REMARK 3 S31: -0.3689 S32: 0.1678 S33: -0.5044 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 616 B 658 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6310 42.7462 54.2870 REMARK 3 T TENSOR REMARK 3 T11: 0.1795 T22: -0.0485 REMARK 3 T33: -0.1985 T12: -0.2044 REMARK 3 T13: -0.0592 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 3.3857 L22: 6.0315 REMARK 3 L33: 3.8180 L12: 1.1719 REMARK 3 L13: 1.1578 L23: -0.3942 REMARK 3 S TENSOR REMARK 3 S11: 0.5750 S12: -0.5784 S13: 0.0492 REMARK 3 S21: 1.3305 S22: -0.4204 S23: 0.0339 REMARK 3 S31: 0.1091 S32: -0.0499 S33: -0.1546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3P08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1K2P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EQUAL VOLUMES OF WELL SOLUTION (0.2 M REMARK 280 NA MALONATE PH 7.0, 20% PEG 3350, 3% 6-AMINOCAPROIC ACID) AND REMARK 280 PROTEIN SOLUTION (8 MG/ML IN 100 MM NACL, 10 MM TRIS-HCL, PH8.5, REMARK 280 1MM TCEP) , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.30100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.78200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.74650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.78200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.30100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.74650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 393 REMARK 465 TYR A 545 REMARK 465 VAL A 546 REMARK 465 LEU A 547 REMARK 465 ASP A 548 REMARK 465 ASP A 549 REMARK 465 GLU A 550 REMARK 465 TYR A 551 REMARK 465 THR A 552 REMARK 465 SER A 553 REMARK 465 SER A 554 REMARK 465 VAL A 555 REMARK 465 GLY A 556 REMARK 465 SER A 557 REMARK 465 SER A 659 REMARK 465 GLY B 393 REMARK 465 SER B 394 REMARK 465 SER B 553 REMARK 465 SER B 554 REMARK 465 VAL B 555 REMARK 465 GLY B 556 REMARK 465 SER B 557 REMARK 465 LYS B 558 REMARK 465 SER B 659 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 544 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 545 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 513 O HOH B 100 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 468 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 468 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 468 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 468 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 489 21.86 -69.70 REMARK 500 ARG A 490 -19.10 -45.57 REMARK 500 HIS A 491 -83.75 -111.82 REMARK 500 ARG A 520 -18.05 86.22 REMARK 500 ASP A 521 49.25 -145.65 REMARK 500 PRO A 560 54.59 -66.05 REMARK 500 ARG A 600 53.67 -116.37 REMARK 500 MET B 489 21.40 -69.15 REMARK 500 ARG B 490 -19.87 -44.96 REMARK 500 HIS B 491 -85.73 -110.53 REMARK 500 ARG B 520 -18.80 86.42 REMARK 500 ASP B 521 50.86 -146.43 REMARK 500 LEU B 547 -159.07 -80.72 REMARK 500 ASP B 548 78.81 45.12 REMARK 500 PRO B 560 55.73 -65.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 491 ARG A 492 -142.73 REMARK 500 ARG A 492 PHE A 493 -144.15 REMARK 500 HIS B 491 ARG B 492 -143.30 REMARK 500 ARG B 492 PHE B 493 -145.06 REMARK 500 LEU B 542 SER B 543 139.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OCS RELATED DB: PDB REMARK 900 HUMAN BTK KINASE DOMAIN BOUND TO CGI1746 REMARK 900 RELATED ID: 3OCT RELATED DB: PDB REMARK 900 HUMAN BTK KINASE DOMAIN BOUND TO DASATINIB DBREF 3P08 A 393 659 UNP Q06187 BTK_HUMAN 393 659 DBREF 3P08 B 393 659 UNP Q06187 BTK_HUMAN 393 659 SEQRES 1 A 267 GLY SER TRP GLU ILE ASP PRO LYS ASP LEU THR PHE LEU SEQRES 2 A 267 LYS GLU LEU GLY THR GLY GLN PHE GLY VAL VAL LYS TYR SEQRES 3 A 267 GLY LYS TRP ARG GLY GLN TYR ASP VAL ALA ILE LYS MET SEQRES 4 A 267 ILE LYS GLU GLY SER MET SER GLU ASP GLU PHE ILE GLU SEQRES 5 A 267 GLU ALA LYS VAL MET MET ASN LEU SER HIS GLU LYS LEU SEQRES 6 A 267 VAL GLN LEU TYR GLY VAL CYS THR LYS GLN ARG PRO ILE SEQRES 7 A 267 PHE ILE ILE THR GLU TYR MET ALA ASN GLY CYS LEU LEU SEQRES 8 A 267 ASN TYR LEU ARG GLU MET ARG HIS ARG PHE GLN THR GLN SEQRES 9 A 267 GLN LEU LEU GLU MET CYS LYS ASP VAL CYS GLU ALA MET SEQRES 10 A 267 GLU TYR LEU GLU SER LYS GLN PHE LEU HIS ARG ASP LEU SEQRES 11 A 267 ALA ALA ARG ASN CYS LEU VAL ASN ASP GLN GLY VAL VAL SEQRES 12 A 267 LYS VAL SER ASP PHE GLY LEU SER ARG TYR VAL LEU ASP SEQRES 13 A 267 ASP GLU TYR THR SER SER VAL GLY SER LYS PHE PRO VAL SEQRES 14 A 267 ARG TRP SER PRO PRO GLU VAL LEU MET TYR SER LYS PHE SEQRES 15 A 267 SER SER LYS SER ASP ILE TRP ALA PHE GLY VAL LEU MET SEQRES 16 A 267 TRP GLU ILE TYR SER LEU GLY LYS MET PRO TYR GLU ARG SEQRES 17 A 267 PHE THR ASN SER GLU THR ALA GLU HIS ILE ALA GLN GLY SEQRES 18 A 267 LEU ARG LEU TYR ARG PRO HIS LEU ALA SER GLU LYS VAL SEQRES 19 A 267 TYR THR ILE MET TYR SER CYS TRP HIS GLU LYS ALA ASP SEQRES 20 A 267 GLU ARG PRO THR PHE LYS ILE LEU LEU SER ASN ILE LEU SEQRES 21 A 267 ASP VAL MET ASP GLU GLU SER SEQRES 1 B 267 GLY SER TRP GLU ILE ASP PRO LYS ASP LEU THR PHE LEU SEQRES 2 B 267 LYS GLU LEU GLY THR GLY GLN PHE GLY VAL VAL LYS TYR SEQRES 3 B 267 GLY LYS TRP ARG GLY GLN TYR ASP VAL ALA ILE LYS MET SEQRES 4 B 267 ILE LYS GLU GLY SER MET SER GLU ASP GLU PHE ILE GLU SEQRES 5 B 267 GLU ALA LYS VAL MET MET ASN LEU SER HIS GLU LYS LEU SEQRES 6 B 267 VAL GLN LEU TYR GLY VAL CYS THR LYS GLN ARG PRO ILE SEQRES 7 B 267 PHE ILE ILE THR GLU TYR MET ALA ASN GLY CYS LEU LEU SEQRES 8 B 267 ASN TYR LEU ARG GLU MET ARG HIS ARG PHE GLN THR GLN SEQRES 9 B 267 GLN LEU LEU GLU MET CYS LYS ASP VAL CYS GLU ALA MET SEQRES 10 B 267 GLU TYR LEU GLU SER LYS GLN PHE LEU HIS ARG ASP LEU SEQRES 11 B 267 ALA ALA ARG ASN CYS LEU VAL ASN ASP GLN GLY VAL VAL SEQRES 12 B 267 LYS VAL SER ASP PHE GLY LEU SER ARG TYR VAL LEU ASP SEQRES 13 B 267 ASP GLU TYR THR SER SER VAL GLY SER LYS PHE PRO VAL SEQRES 14 B 267 ARG TRP SER PRO PRO GLU VAL LEU MET TYR SER LYS PHE SEQRES 15 B 267 SER SER LYS SER ASP ILE TRP ALA PHE GLY VAL LEU MET SEQRES 16 B 267 TRP GLU ILE TYR SER LEU GLY LYS MET PRO TYR GLU ARG SEQRES 17 B 267 PHE THR ASN SER GLU THR ALA GLU HIS ILE ALA GLN GLY SEQRES 18 B 267 LEU ARG LEU TYR ARG PRO HIS LEU ALA SER GLU LYS VAL SEQRES 19 B 267 TYR THR ILE MET TYR SER CYS TRP HIS GLU LYS ALA ASP SEQRES 20 B 267 GLU ARG PRO THR PHE LYS ILE LEU LEU SER ASN ILE LEU SEQRES 21 B 267 ASP VAL MET ASP GLU GLU SER FORMUL 3 HOH *140(H2 O) HELIX 1 1 ASP A 398 LYS A 400 5 3 HELIX 2 2 SER A 438 ASN A 451 1 14 HELIX 3 3 LEU A 482 GLU A 488 1 7 HELIX 4 4 GLN A 494 LYS A 515 1 22 HELIX 5 5 ALA A 523 ARG A 525 5 3 HELIX 6 6 PRO A 560 SER A 564 5 5 HELIX 7 7 PRO A 565 SER A 572 1 8 HELIX 8 8 SER A 575 SER A 592 1 18 HELIX 9 9 THR A 602 GLN A 612 1 11 HELIX 10 10 SER A 623 CYS A 633 1 11 HELIX 11 11 LYS A 637 ARG A 641 5 5 HELIX 12 12 THR A 643 GLU A 658 1 16 HELIX 13 13 ASP B 398 LYS B 400 5 3 HELIX 14 14 SER B 438 ASN B 451 1 14 HELIX 15 15 LEU B 482 GLU B 488 1 7 HELIX 16 16 GLN B 494 LYS B 515 1 22 HELIX 17 17 ALA B 523 ARG B 525 5 3 HELIX 18 18 PRO B 560 SER B 564 5 5 HELIX 19 19 PRO B 565 SER B 572 1 8 HELIX 20 20 SER B 575 SER B 592 1 18 HELIX 21 21 THR B 602 GLN B 612 1 11 HELIX 22 22 SER B 623 CYS B 633 1 11 HELIX 23 23 LYS B 637 ARG B 641 5 5 HELIX 24 24 THR B 643 GLU B 657 1 15 SHEET 1 A 5 LEU A 402 THR A 410 0 SHEET 2 A 5 GLY A 414 TRP A 421 -1 O LYS A 420 N THR A 403 SHEET 3 A 5 TYR A 425 MET A 431 -1 O TYR A 425 N TRP A 421 SHEET 4 A 5 PHE A 471 GLU A 475 -1 O ILE A 472 N LYS A 430 SHEET 5 A 5 LEU A 460 CYS A 464 -1 N TYR A 461 O ILE A 473 SHEET 1 B 3 GLY A 480 CYS A 481 0 SHEET 2 B 3 CYS A 527 VAL A 529 -1 O VAL A 529 N GLY A 480 SHEET 3 B 3 VAL A 535 VAL A 537 -1 O LYS A 536 N LEU A 528 SHEET 1 C 5 LEU B 402 THR B 410 0 SHEET 2 C 5 GLY B 414 TRP B 421 -1 O LYS B 420 N THR B 403 SHEET 3 C 5 TYR B 425 MET B 431 -1 O TYR B 425 N TRP B 421 SHEET 4 C 5 PHE B 471 GLU B 475 -1 O ILE B 472 N LYS B 430 SHEET 5 C 5 LEU B 460 CYS B 464 -1 N TYR B 461 O ILE B 473 SHEET 1 D 3 GLY B 480 CYS B 481 0 SHEET 2 D 3 CYS B 527 VAL B 529 -1 O VAL B 529 N GLY B 480 SHEET 3 D 3 VAL B 535 VAL B 537 -1 O LYS B 536 N LEU B 528 CISPEP 1 ARG A 468 PRO A 469 0 0.75 CISPEP 2 ARG B 468 PRO B 469 0 1.90 CRYST1 46.602 103.493 117.564 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021458 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009662 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008506 0.00000