HEADER PROTEIN BINDING 30-SEP-10 3P1L TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI BAMB, A LIPOPROTEIN COMPONENT OF TITLE 2 THE BETA-BARREL ASSEMBLY MACHINERY COMPLEX, NATIVE CRYSTALS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN YFGL; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B2512, JW2496, YFGL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA PROPELLER, LIPOPROTEIN INVOLVED IN BETA-BARREL ASSEMBLY IN E. KEYWDS 2 COLI, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.H.KIM,M.PAETZEL REVDAT 6 21-FEB-24 3P1L 1 REMARK SEQADV REVDAT 5 08-NOV-17 3P1L 1 REMARK REVDAT 4 16-MAY-12 3P1L 1 AUTHOR VERSN REVDAT 3 09-MAR-11 3P1L 1 JRNL REVDAT 2 29-DEC-10 3P1L 1 JRNL REVDAT 1 22-DEC-10 3P1L 0 JRNL AUTH K.H.KIM,M.PAETZEL JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI BAMB, A LIPOPROTEIN JRNL TITL 2 COMPONENT OF THE BETA-BARREL ASSEMBLY MACHINERY COMPLEX, JRNL TITL 3 NATIVE CRYSTALS JRNL REF J.MOL.BIOL. V. 406 667 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21168416 JRNL DOI 10.1016/J.JMB.2010.12.020 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 17912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 914 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1231 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2711 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -1.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.252 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.599 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2761 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3766 ; 1.989 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 7.582 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;41.097 ;25.339 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 434 ;19.061 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.099 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2092 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1778 ; 1.193 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2854 ; 2.299 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 983 ; 3.199 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 912 ; 5.340 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P1L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17912 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRIC ACID, 2M NACL, PH 4.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.39000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.85500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.85500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.58500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.85500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.85500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.19500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.85500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.85500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.58500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.85500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.85500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.19500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.39000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 HIS A 19 REMARK 465 MET A 20 REMARK 465 SER A 21 REMARK 465 LEU A 22 REMARK 465 PHE A 23 REMARK 465 ASN A 24 REMARK 465 SER A 25 REMARK 465 GLU A 26 REMARK 465 GLU A 27 REMARK 465 ASP A 28 REMARK 465 VAL A 29 REMARK 465 VAL A 30 REMARK 465 ARG A 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 77 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 77 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 154 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 154 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 94 111.43 -168.25 REMARK 500 ASP A 101 -127.20 -121.53 REMARK 500 SER A 112 -37.36 -136.78 REMARK 500 ASP A 159 -114.12 52.21 REMARK 500 ASP A 188 122.89 101.28 REMARK 500 SER A 198 59.02 -145.49 REMARK 500 SER A 238 -21.95 81.77 REMARK 500 ASP A 246 63.94 -163.79 REMARK 500 ASN A 255 69.40 35.41 REMARK 500 LEU A 323 117.98 -38.88 REMARK 500 GLN A 368 -60.04 -141.33 REMARK 500 ASP A 375 61.85 38.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 393 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 406 O REMARK 620 2 HOH A 456 O 93.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 393 DBREF 3P1L A 21 392 UNP P77774 YFGL_ECOLI 21 392 SEQADV 3P1L MET A 0 UNP P77774 EXPRESSION TAG SEQADV 3P1L GLY A 1 UNP P77774 EXPRESSION TAG SEQADV 3P1L SER A 2 UNP P77774 EXPRESSION TAG SEQADV 3P1L SER A 3 UNP P77774 EXPRESSION TAG SEQADV 3P1L HIS A 4 UNP P77774 EXPRESSION TAG SEQADV 3P1L HIS A 5 UNP P77774 EXPRESSION TAG SEQADV 3P1L HIS A 6 UNP P77774 EXPRESSION TAG SEQADV 3P1L HIS A 7 UNP P77774 EXPRESSION TAG SEQADV 3P1L HIS A 8 UNP P77774 EXPRESSION TAG SEQADV 3P1L HIS A 9 UNP P77774 EXPRESSION TAG SEQADV 3P1L SER A 10 UNP P77774 EXPRESSION TAG SEQADV 3P1L SER A 11 UNP P77774 EXPRESSION TAG SEQADV 3P1L GLY A 12 UNP P77774 EXPRESSION TAG SEQADV 3P1L LEU A 13 UNP P77774 EXPRESSION TAG SEQADV 3P1L VAL A 14 UNP P77774 EXPRESSION TAG SEQADV 3P1L PRO A 15 UNP P77774 EXPRESSION TAG SEQADV 3P1L ARG A 16 UNP P77774 EXPRESSION TAG SEQADV 3P1L GLY A 17 UNP P77774 EXPRESSION TAG SEQADV 3P1L SER A 18 UNP P77774 EXPRESSION TAG SEQADV 3P1L HIS A 19 UNP P77774 EXPRESSION TAG SEQADV 3P1L MET A 20 UNP P77774 EXPRESSION TAG SEQRES 1 A 393 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 393 LEU VAL PRO ARG GLY SER HIS MET SER LEU PHE ASN SER SEQRES 3 A 393 GLU GLU ASP VAL VAL LYS MET SER PRO LEU PRO THR VAL SEQRES 4 A 393 GLU ASN GLN PHE THR PRO THR THR ALA TRP SER THR SER SEQRES 5 A 393 VAL GLY SER GLY ILE GLY ASN PHE TYR SER ASN LEU HIS SEQRES 6 A 393 PRO ALA LEU ALA ASP ASN VAL VAL TYR ALA ALA ASP ARG SEQRES 7 A 393 ALA GLY LEU VAL LYS ALA LEU ASN ALA ASP ASP GLY LYS SEQRES 8 A 393 GLU ILE TRP SER VAL SER LEU ALA GLU LYS ASP GLY TRP SEQRES 9 A 393 PHE SER LYS GLU PRO ALA LEU LEU SER GLY GLY VAL THR SEQRES 10 A 393 VAL SER GLY GLY HIS VAL TYR ILE GLY SER GLU LYS ALA SEQRES 11 A 393 GLN VAL TYR ALA LEU ASN THR SER ASP GLY THR VAL ALA SEQRES 12 A 393 TRP GLN THR LYS VAL ALA GLY GLU ALA LEU SER ARG PRO SEQRES 13 A 393 VAL VAL SER ASP GLY LEU VAL LEU ILE HIS THR SER ASN SEQRES 14 A 393 GLY GLN LEU GLN ALA LEU ASN GLU ALA ASP GLY ALA VAL SEQRES 15 A 393 LYS TRP THR VAL ASN LEU ASP MET PRO SER LEU SER LEU SEQRES 16 A 393 ARG GLY GLU SER ALA PRO THR THR ALA PHE GLY ALA ALA SEQRES 17 A 393 VAL VAL GLY GLY ASP ASN GLY ARG VAL SER ALA VAL LEU SEQRES 18 A 393 MET GLU GLN GLY GLN MET ILE TRP GLN GLN ARG ILE SER SEQRES 19 A 393 GLN ALA THR GLY SER THR GLU ILE ASP ARG LEU SER ASP SEQRES 20 A 393 VAL ASP THR THR PRO VAL VAL VAL ASN GLY VAL VAL PHE SEQRES 21 A 393 ALA LEU ALA TYR ASN GLY ASN LEU THR ALA LEU ASP LEU SEQRES 22 A 393 ARG SER GLY GLN ILE MET TRP LYS ARG GLU LEU GLY SER SEQRES 23 A 393 VAL ASN ASP PHE ILE VAL ASP GLY ASN ARG ILE TYR LEU SEQRES 24 A 393 VAL ASP GLN ASN ASP ARG VAL MET ALA LEU THR ILE ASP SEQRES 25 A 393 GLY GLY VAL THR LEU TRP THR GLN SER ASP LEU LEU HIS SEQRES 26 A 393 ARG LEU LEU THR SER PRO VAL LEU TYR ASN GLY ASN LEU SEQRES 27 A 393 VAL VAL GLY ASP SER GLU GLY TYR LEU HIS TRP ILE ASN SEQRES 28 A 393 VAL GLU ASP GLY ARG PHE VAL ALA GLN GLN LYS VAL ASP SEQRES 29 A 393 SER SER GLY PHE GLN THR GLU PRO VAL ALA ALA ASP GLY SEQRES 30 A 393 LYS LEU LEU ILE GLN ALA LYS ASP GLY THR VAL TYR SER SEQRES 31 A 393 ILE THR ARG HET NA A 393 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *80(H2 O) SHEET 1 A 4 THR A 46 THR A 50 0 SHEET 2 A 4 VAL A 387 ILE A 390 -1 O VAL A 387 N THR A 50 SHEET 3 A 4 LYS A 377 GLN A 381 -1 N ILE A 380 O TYR A 388 SHEET 4 A 4 VAL A 372 ALA A 374 -1 N ALA A 374 O LYS A 377 SHEET 1 B 4 ALA A 66 ALA A 68 0 SHEET 2 B 4 VAL A 71 ALA A 75 -1 O TYR A 73 N ALA A 66 SHEET 3 B 4 LEU A 80 ASN A 85 -1 O LEU A 84 N VAL A 72 SHEET 4 B 4 GLU A 91 SER A 96 -1 O VAL A 95 N VAL A 81 SHEET 1 C 2 GLU A 99 LYS A 100 0 SHEET 2 C 2 LYS A 106 GLU A 107 -1 O GLU A 107 N GLU A 99 SHEET 1 D 4 LEU A 111 SER A 118 0 SHEET 2 D 4 HIS A 121 SER A 126 -1 O TYR A 123 N THR A 116 SHEET 3 D 4 GLN A 130 ASN A 135 -1 O LEU A 134 N VAL A 122 SHEET 4 D 4 VAL A 141 LYS A 146 -1 O TRP A 143 N ALA A 133 SHEET 1 E 4 VAL A 156 SER A 158 0 SHEET 2 E 4 LEU A 161 HIS A 165 -1 O LEU A 163 N VAL A 156 SHEET 3 E 4 GLN A 170 ASN A 175 -1 O LEU A 174 N VAL A 162 SHEET 4 E 4 VAL A 181 ASN A 186 -1 O VAL A 185 N LEU A 171 SHEET 1 F 4 THR A 201 ALA A 203 0 SHEET 2 F 4 ALA A 206 VAL A 209 -1 O VAL A 208 N THR A 201 SHEET 3 F 4 ARG A 215 LEU A 220 -1 O VAL A 219 N ALA A 207 SHEET 4 F 4 GLN A 225 ARG A 231 -1 O GLN A 225 N LEU A 220 SHEET 1 G 4 VAL A 252 VAL A 254 0 SHEET 2 G 4 VAL A 257 LEU A 261 -1 O PHE A 259 N VAL A 252 SHEET 3 G 4 LEU A 267 ASP A 271 -1 O LEU A 270 N VAL A 258 SHEET 4 G 4 ILE A 277 ARG A 281 -1 O MET A 278 N ALA A 269 SHEET 1 H 4 VAL A 286 VAL A 291 0 SHEET 2 H 4 ARG A 295 ASP A 300 -1 O TYR A 297 N ILE A 290 SHEET 3 H 4 VAL A 305 THR A 309 -1 O MET A 306 N LEU A 298 SHEET 4 H 4 THR A 315 GLN A 319 -1 O GLN A 319 N VAL A 305 SHEET 1 I 4 VAL A 331 TYR A 333 0 SHEET 2 I 4 ASN A 336 GLY A 340 -1 O VAL A 338 N VAL A 331 SHEET 3 I 4 TYR A 345 ASN A 350 -1 O ILE A 349 N LEU A 337 SHEET 4 I 4 PHE A 356 LYS A 361 -1 O ALA A 358 N TRP A 348 LINK NA NA A 393 O HOH A 406 1555 1555 3.02 LINK NA NA A 393 O HOH A 456 1555 1555 3.14 CISPEP 1 GLY A 114 VAL A 115 0 5.65 CISPEP 2 THR A 236 GLY A 237 0 -16.08 CISPEP 3 GLY A 237 SER A 238 0 7.41 SITE 1 AC1 3 ARG A 154 GLU A 197 HOH A 406 CRYST1 101.710 101.710 108.780 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009193 0.00000