HEADER PROTEIN TRANSPORT 30-SEP-10 3P1W TITLE CRYSTAL STRUCTURE OF RAB GDI FROM PLASMODIUM FALCIPARUM, PFL2060C COMPND MOL_ID: 1; COMPND 2 MOLECULE: RABGDI PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PFL2060C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15 KEYWDS GDI RAB, MALARIA, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSPORT, KEYWDS 2 PF10_0345, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,A.M.NECULAI,J.WEADGE,F.MACKENZIE,D.COSSAR,W.TEMPEL, AUTHOR 2 A.BOCHKAREV,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,G.LANGSLEY,J.BOSCH, AUTHOR 3 R.HUI,J.C.PIZZARO,A.HUTCHINSON,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 06-SEP-23 3P1W 1 REMARK SEQADV REVDAT 3 08-NOV-17 3P1W 1 REMARK REVDAT 2 29-OCT-14 3P1W 1 AUTHOR JRNL VERSN REVDAT 1 15-DEC-10 3P1W 0 JRNL AUTH A.K.WERNIMONT,A.M.NECULAI,J.WEADGE,F.MACKENZIE,D.COSSAR, JRNL AUTH 2 W.TEMPEL,A.BOCHKAREV,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA, JRNL AUTH 3 G.LANGSLEY,J.BOSCH,R.HUI,J.C.PIZZARO,A.HUTCHINSON JRNL TITL CRYSTAL STRUCTURE OF RAB GDI FROM PLASMODIUM FALCIPARUM, JRNL TITL 2 PFL2060C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.ATTAL,G.LANGSLEY REMARK 1 TITL A PLASMODIUM FALCIPARUM HOMOLOGUE OF A RAB SPECIFIC GDP REMARK 1 TITL 2 DISSOCIATION INHIBITOR. REMARK 1 REF MOL.BIOCHEM.PARASITOL. V. 79 91 1996 REMARK 1 REFN ISSN 0166-6851 REMARK 1 PMID 8844675 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 50360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2571 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3439 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3523 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : -2.03000 REMARK 3 B33 (A**2) : 1.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.216 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3698 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2444 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5039 ; 1.264 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6024 ; 0.872 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 461 ; 5.667 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;35.649 ;25.427 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 644 ;12.435 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;12.808 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 568 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4105 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 715 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2256 ; 0.667 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 909 ; 0.180 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3679 ; 1.195 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1442 ; 1.799 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1357 ; 2.904 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4039 14.5863 44.0026 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.0721 REMARK 3 T33: 0.0317 T12: 0.0521 REMARK 3 T13: -0.0073 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.5942 L22: 1.4950 REMARK 3 L33: 1.0229 L12: -0.5137 REMARK 3 L13: -0.1015 L23: 0.4588 REMARK 3 S TENSOR REMARK 3 S11: 0.1329 S12: 0.3067 S13: -0.0218 REMARK 3 S21: -0.1596 S22: -0.1369 S23: 0.0740 REMARK 3 S31: -0.0253 S32: -0.0490 S33: 0.0040 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3P1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57819 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.98900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 1LV0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1 M HEPES 7.5, 0.2 M REMARK 280 NACL2, 2 MM TCEP, 5% MPD, GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.95800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.95800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.44250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.28250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.44250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.28250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.95800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.44250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.28250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.95800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.44250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.28250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 ARG A -5 REMARK 465 GLU A -4 REMARK 465 ASN A -3 REMARK 465 LEU A -2 REMARK 465 TYR A -1 REMARK 465 PHE A 0 REMARK 465 GLY A 254 REMARK 465 GLY A 255 REMARK 465 ASP A 445 REMARK 465 ASP A 446 REMARK 465 LEU A 447 REMARK 465 ASN A 448 REMARK 465 THR A 449 REMARK 465 ASN A 450 REMARK 465 ALA A 451 REMARK 465 ASP A 452 REMARK 465 GLY A 453 REMARK 465 GLU A 454 REMARK 465 ALA A 455 REMARK 465 PRO A 456 REMARK 465 ASP A 457 REMARK 465 PHE A 458 REMARK 465 ASN A 459 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 1 CG CD OE1 NE2 REMARK 470 ARG A 94 CD NE CZ NH1 NH2 REMARK 470 MET A 143 CG SD CE REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 LYS A 181 CE NZ REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 253 CG OD1 ND2 REMARK 470 LYS A 359 CE NZ REMARK 470 LYS A 377 CE NZ REMARK 470 LYS A 381 CD CE NZ REMARK 470 LYS A 405 CG CD CE NZ REMARK 470 LYS A 406 CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 143 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 143 CA MET A 143 CB 0.210 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 143 -60.82 103.40 REMARK 500 SER A 351 -159.41 -157.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 3P1W A 3 459 UNP Q8I501 Q8I501_PLAF7 3 459 SEQADV 3P1W MET A -15 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W HIS A -14 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W HIS A -13 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W HIS A -12 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W HIS A -11 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W HIS A -10 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W HIS A -9 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W SER A -8 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W SER A -7 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W GLY A -6 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W ARG A -5 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W GLU A -4 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W ASN A -3 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W LEU A -2 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W TYR A -1 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W PHE A 0 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W GLN A 1 UNP Q8I501 EXPRESSION TAG SEQADV 3P1W GLY A 2 UNP Q8I501 EXPRESSION TAG SEQRES 1 A 475 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 475 LEU TYR PHE GLN GLY GLU HIS TYR ASP VAL ILE ILE LEU SEQRES 3 A 475 GLY THR GLY LEU LYS GLU CYS ILE LEU SER GLY LEU LEU SEQRES 4 A 475 SER HIS TYR GLY LYS LYS ILE LEU VAL LEU ASP ARG ASN SEQRES 5 A 475 PRO TYR TYR GLY GLY GLU THR ALA SER LEU ASN LEU THR SEQRES 6 A 475 ASN LEU TYR ASN THR PHE LYS PRO LYS GLU ASN ILE PRO SEQRES 7 A 475 SER LYS TYR GLY GLU ASN ARG HIS TRP ASN VAL ASP LEU SEQRES 8 A 475 ILE PRO LYS PHE ILE LEU VAL GLY GLY ASN LEU VAL LYS SEQRES 9 A 475 ILE LEU LYS LYS THR ARG VAL THR ASN TYR LEU GLU TRP SEQRES 10 A 475 LEU VAL VAL GLU GLY SER TYR VAL TYR GLN HIS GLN LYS SEQRES 11 A 475 LYS GLY PHE LEU THR SER GLU LYS PHE ILE HIS LYS VAL SEQRES 12 A 475 PRO ALA THR ASP MET GLU ALA LEU VAL SER PRO LEU LEU SEQRES 13 A 475 SER LEU MET GLU LYS ASN ARG CYS LYS ASN PHE TYR GLN SEQRES 14 A 475 TYR VAL SER GLU TRP ASP ALA ASN LYS ARG ASN THR TRP SEQRES 15 A 475 ASP ASN LEU ASP PRO TYR LYS LEU THR MET LEU GLU ILE SEQRES 16 A 475 TYR LYS HIS PHE ASN LEU CYS GLN LEU THR ILE ASP PHE SEQRES 17 A 475 LEU GLY HIS ALA VAL ALA LEU TYR LEU ASN ASP ASP TYR SEQRES 18 A 475 LEU LYS GLN PRO ALA TYR LEU THR LEU GLU ARG ILE LYS SEQRES 19 A 475 LEU TYR MET GLN SER ILE SER ALA PHE GLY LYS SER PRO SEQRES 20 A 475 PHE ILE TYR PRO LEU TYR GLY LEU GLY GLY ILE PRO GLU SEQRES 21 A 475 GLY PHE SER ARG MET CYS ALA ILE ASN GLY GLY THR PHE SEQRES 22 A 475 MET LEU ASN LYS ASN VAL VAL ASP PHE VAL PHE ASP ASP SEQRES 23 A 475 ASP ASN LYS VAL CYS GLY ILE LYS SER SER ASP GLY GLU SEQRES 24 A 475 ILE ALA TYR CYS ASP LYS VAL ILE CYS ASP PRO SER TYR SEQRES 25 A 475 VAL MET HIS LEU LYS ASN LYS ILE LYS LYS ILE GLY GLN SEQRES 26 A 475 VAL ILE ARG CYS ILE CYS ILE LEU SER ASN PRO ILE PRO SEQRES 27 A 475 GLU THR ASN GLN THR ASN SER CYS GLN ILE ILE ILE PRO SEQRES 28 A 475 GLN ASN GLN LEU ASN ARG LYS SER ASP ILE TYR ILE ASN SEQRES 29 A 475 LEU VAL SER PHE GLN HIS GLY VAL THR LEU LYS GLY LYS SEQRES 30 A 475 TYR ILE ALA ILE VAL SER ALA THR VAL GLU THR ASN ASN SEQRES 31 A 475 PRO ILE LYS GLU ILE GLU LYS PRO LEU GLU LEU LEU GLY SEQRES 32 A 475 THR ILE GLU GLU LYS PHE VAL LYS ILE SER ASP LEU TYR SEQRES 33 A 475 VAL SER THR SER LYS LYS PRO ALA ASP ASN ILE PHE VAL SEQRES 34 A 475 THR SER SER TYR ASP ALA THR SER HIS PHE GLU THR ALA SEQRES 35 A 475 THR ASN ASP LEU LEU GLN ILE TRP GLU ASN LEU TRP GLY SEQRES 36 A 475 GLN LYS LEU ASN PHE ASP ASP LEU ASN THR ASN ALA ASP SEQRES 37 A 475 GLY GLU ALA PRO ASP PHE ASN FORMUL 2 HOH *215(H2 O) HELIX 1 1 GLY A 13 TYR A 26 1 14 HELIX 2 2 GLY A 40 THR A 43 5 4 HELIX 3 3 ASN A 47 LYS A 56 1 10 HELIX 4 4 PRO A 62 GLY A 66 5 5 HELIX 5 5 GLU A 67 TRP A 71 5 5 HELIX 6 6 GLY A 84 THR A 93 1 10 HELIX 7 7 VAL A 95 LEU A 99 5 5 HELIX 8 8 THR A 130 VAL A 136 1 7 HELIX 9 9 SER A 141 TRP A 158 1 18 HELIX 10 10 LYS A 162 TRP A 166 5 5 HELIX 11 11 THR A 175 PHE A 183 1 9 HELIX 12 12 CYS A 186 VAL A 197 1 12 HELIX 13 13 ASP A 203 GLN A 208 5 6 HELIX 14 14 PRO A 209 SER A 225 1 17 HELIX 15 15 GLY A 240 ASN A 253 1 14 HELIX 16 16 PRO A 294 VAL A 297 5 4 HELIX 17 17 PRO A 335 ASN A 340 5 6 HELIX 18 18 GLN A 353 GLY A 355 5 3 HELIX 19 19 ASN A 374 ILE A 379 1 6 HELIX 20 20 ILE A 379 LEU A 385 1 7 HELIX 21 21 PHE A 423 GLY A 439 1 17 SHEET 1 A 6 PHE A 257 MET A 258 0 SHEET 2 A 6 ILE A 30 LEU A 33 1 N VAL A 32 O MET A 258 SHEET 3 A 6 HIS A 4 LEU A 10 1 N ILE A 9 O LEU A 31 SHEET 4 A 6 ILE A 284 CYS A 292 1 O ILE A 291 N LEU A 10 SHEET 5 A 6 VAL A 274 SER A 279 -1 N ILE A 277 O ALA A 285 SHEET 6 A 6 VAL A 263 PHE A 268 -1 N VAL A 267 O CYS A 275 SHEET 1 B 5 PHE A 257 MET A 258 0 SHEET 2 B 5 ILE A 30 LEU A 33 1 N VAL A 32 O MET A 258 SHEET 3 B 5 HIS A 4 LEU A 10 1 N ILE A 9 O LEU A 31 SHEET 4 B 5 ILE A 284 CYS A 292 1 O ILE A 291 N LEU A 10 SHEET 5 B 5 ILE A 411 VAL A 413 1 O PHE A 412 N VAL A 290 SHEET 1 C 2 SER A 45 LEU A 46 0 SHEET 2 C 2 VAL A 73 ASP A 74 -1 O VAL A 73 N LEU A 46 SHEET 1 D 3 ILE A 80 LEU A 81 0 SHEET 2 D 3 PHE A 232 PRO A 235 -1 O ILE A 233 N ILE A 80 SHEET 3 D 3 TRP A 101 VAL A 103 -1 N LEU A 102 O TYR A 234 SHEET 1 E 7 LYS A 122 LYS A 126 0 SHEET 2 E 7 GLY A 106 GLN A 113 -1 N GLN A 113 O LYS A 122 SHEET 3 E 7 CYS A 330 ILE A 334 1 O GLN A 331 N TYR A 108 SHEET 4 E 7 ILE A 345 SER A 351 -1 O ILE A 345 N ILE A 334 SHEET 5 E 7 TYR A 362 THR A 369 -1 O ILE A 363 N VAL A 350 SHEET 6 E 7 ILE A 304 LEU A 317 -1 N LEU A 317 O TYR A 362 SHEET 7 E 7 ILE A 389 SER A 402 -1 O LEU A 399 N ILE A 307 CRYST1 80.885 116.565 125.916 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012363 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007942 0.00000