HEADER HYDROLASE 04-OCT-10 3P2U TITLE CRYSTAL STRUCTURE OF PHNP IN COMPLEX WITH ORTHOVANADATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PHNP; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B4092, JW4053, PHNP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26 KEYWDS PHOSPHODIESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.PODZELINSKA,Y.M.KIM,D.ZECHEL,F.FAUCHER,Z.JIA REVDAT 3 21-FEB-24 3P2U 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3P2U 1 REMARK REVDAT 1 05-JAN-11 3P2U 0 JRNL AUTH K.PODZELINSKA,Y.M.KIM,D.ZECHEL,F.FAUCHER,Z.JIA JRNL TITL CRYSTAL STRUCTURE OF PHNP IN COMPLEX WITH ORTHOVANADATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 87551 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4388 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2773 - 4.5954 0.98 2939 146 0.1768 0.1884 REMARK 3 2 4.5954 - 3.6487 1.00 2943 156 0.1375 0.1450 REMARK 3 3 3.6487 - 3.1878 1.00 2933 137 0.1643 0.1890 REMARK 3 4 3.1878 - 2.8965 1.00 2918 140 0.1701 0.2058 REMARK 3 5 2.8965 - 2.6890 1.00 2902 162 0.1632 0.1912 REMARK 3 6 2.6890 - 2.5305 1.00 2934 143 0.1608 0.1678 REMARK 3 7 2.5305 - 2.4038 1.00 2907 154 0.1503 0.1563 REMARK 3 8 2.4038 - 2.2992 1.00 2865 153 0.1484 0.1738 REMARK 3 9 2.2992 - 2.2107 0.99 2878 176 0.1465 0.1971 REMARK 3 10 2.2107 - 2.1344 1.00 2896 153 0.1558 0.1858 REMARK 3 11 2.1344 - 2.0677 0.99 2865 172 0.1505 0.1867 REMARK 3 12 2.0677 - 2.0086 0.99 2867 160 0.1485 0.1765 REMARK 3 13 2.0086 - 1.9557 0.99 2833 158 0.1414 0.1415 REMARK 3 14 1.9557 - 1.9080 0.98 2835 158 0.1461 0.1756 REMARK 3 15 1.9080 - 1.8646 0.98 2878 143 0.1473 0.2054 REMARK 3 16 1.8646 - 1.8249 0.98 2838 153 0.1504 0.1746 REMARK 3 17 1.8249 - 1.7884 0.97 2814 145 0.1489 0.1836 REMARK 3 18 1.7884 - 1.7547 0.97 2798 150 0.1521 0.1769 REMARK 3 19 1.7547 - 1.7234 0.96 2798 136 0.1516 0.1741 REMARK 3 20 1.7234 - 1.6941 0.96 2800 157 0.1575 0.1954 REMARK 3 21 1.6941 - 1.6668 0.95 2728 140 0.1571 0.2174 REMARK 3 22 1.6668 - 1.6412 0.95 2727 144 0.1611 0.2099 REMARK 3 23 1.6412 - 1.6170 0.93 2708 144 0.1591 0.1739 REMARK 3 24 1.6170 - 1.5943 0.93 2677 128 0.1609 0.1850 REMARK 3 25 1.5943 - 1.5727 0.92 2696 144 0.1654 0.2155 REMARK 3 26 1.5727 - 1.5523 0.91 2595 141 0.1761 0.2098 REMARK 3 27 1.5523 - 1.5329 0.88 2549 126 0.1898 0.2299 REMARK 3 28 1.5329 - 1.5144 0.86 2487 128 0.1879 0.2121 REMARK 3 29 1.5144 - 1.4968 0.82 2388 108 0.1963 0.1999 REMARK 3 30 1.4968 - 1.4800 0.76 2167 133 0.2099 0.2299 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 59.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40770 REMARK 3 B22 (A**2) : -5.64420 REMARK 3 B33 (A**2) : 6.05180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.48630 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4188 REMARK 3 ANGLE : 1.235 5748 REMARK 3 CHIRALITY : 0.084 620 REMARK 3 PLANARITY : 0.006 773 REMARK 3 DIHEDRAL : 16.869 1507 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -8.5859 1.1780 16.7272 REMARK 3 T TENSOR REMARK 3 T11: 0.0588 T22: 0.0944 REMARK 3 T33: 0.0619 T12: -0.0140 REMARK 3 T13: 0.0093 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.2215 L22: 1.3233 REMARK 3 L33: 0.2300 L12: 0.1101 REMARK 3 L13: 0.0190 L23: -0.2177 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: -0.0044 S13: 0.0272 REMARK 3 S21: -0.0149 S22: 0.0372 S23: 0.2236 REMARK 3 S31: -0.0009 S32: 0.0015 S33: -0.0018 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109380 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 35.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 48.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 7 % PEG 8000, PH 5.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.38050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.64250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.38050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.64250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 251 REMARK 465 ALA A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 MET B 1 REMARK 465 ALA B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 465 HIS B 258 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 2 OG REMARK 470 VAL B 251 CB CG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 174 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 265 O HOH B 298 2.13 REMARK 500 O PHE B 86 O HOH B 265 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 47 -119.96 56.32 REMARK 500 ASP A 54 170.39 66.12 REMARK 500 ALA A 55 45.33 -148.90 REMARK 500 ASP A 108 -133.61 45.72 REMARK 500 ALA A 196 -135.38 51.73 REMARK 500 PRO A 197 -167.98 -74.71 REMARK 500 ASN B 47 -116.76 53.87 REMARK 500 ASP B 54 168.67 66.35 REMARK 500 ALA B 55 40.49 -149.95 REMARK 500 ASP B 108 -134.71 48.27 REMARK 500 HIS B 156 14.40 55.94 REMARK 500 ALA B 166 -154.06 -96.42 REMARK 500 GLN B 180 112.04 -38.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 262 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 21 SG REMARK 620 2 CYS A 23 SG 109.4 REMARK 620 3 CYS A 26 SG 115.9 109.1 REMARK 620 4 HIS A 225 ND1 104.4 115.2 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 260 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 76 NE2 REMARK 620 2 HIS A 78 ND1 92.7 REMARK 620 3 HIS A 143 NE2 99.2 97.5 REMARK 620 4 ASP A 164 OD2 88.9 171.5 90.5 REMARK 620 5 VO4 A 259 O1 174.7 92.1 78.0 86.6 REMARK 620 6 HOH A 272 O 98.5 94.1 158.3 77.4 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 261 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 80 OD2 REMARK 620 2 HIS A 81 NE2 84.3 REMARK 620 3 ASP A 164 OD2 162.4 91.5 REMARK 620 4 HIS A 222 NE2 101.8 114.3 95.5 REMARK 620 5 VO4 A 259 O2 83.8 164.9 97.0 77.4 REMARK 620 6 HOH A 272 O 85.5 90.7 77.5 154.4 79.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 262 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 21 SG REMARK 620 2 CYS B 23 SG 110.0 REMARK 620 3 CYS B 26 SG 115.2 110.7 REMARK 620 4 HIS B 225 ND1 103.9 114.3 102.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 261 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 76 NE2 REMARK 620 2 HIS B 78 ND1 92.4 REMARK 620 3 HIS B 143 NE2 98.2 95.3 REMARK 620 4 ASP B 164 OD2 88.8 172.1 92.3 REMARK 620 5 VO4 B 259 O3 175.6 90.6 78.3 88.7 REMARK 620 6 HOH B 277 O 95.4 95.2 162.5 76.9 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 260 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 80 OD2 REMARK 620 2 HIS B 81 NE2 83.8 REMARK 620 3 ASP B 164 OD2 164.5 93.2 REMARK 620 4 HIS B 222 NE2 99.6 109.9 95.8 REMARK 620 5 VO4 B 259 O1 85.1 168.1 96.4 76.2 REMARK 620 6 HOH B 277 O 86.2 89.8 78.6 159.9 85.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 B 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 262 DBREF 3P2U A 1 252 UNP P16692 PHNP_ECOLI 1 252 DBREF 3P2U B 1 252 UNP P16692 PHNP_ECOLI 1 252 SEQADV 3P2U HIS A 253 UNP P16692 EXPRESSION TAG SEQADV 3P2U HIS A 254 UNP P16692 EXPRESSION TAG SEQADV 3P2U HIS A 255 UNP P16692 EXPRESSION TAG SEQADV 3P2U HIS A 256 UNP P16692 EXPRESSION TAG SEQADV 3P2U HIS A 257 UNP P16692 EXPRESSION TAG SEQADV 3P2U HIS A 258 UNP P16692 EXPRESSION TAG SEQADV 3P2U HIS B 253 UNP P16692 EXPRESSION TAG SEQADV 3P2U HIS B 254 UNP P16692 EXPRESSION TAG SEQADV 3P2U HIS B 255 UNP P16692 EXPRESSION TAG SEQADV 3P2U HIS B 256 UNP P16692 EXPRESSION TAG SEQADV 3P2U HIS B 257 UNP P16692 EXPRESSION TAG SEQADV 3P2U HIS B 258 UNP P16692 EXPRESSION TAG SEQRES 1 A 258 MET SER LEU THR LEU THR LEU THR GLY THR GLY GLY ALA SEQRES 2 A 258 GLN GLY VAL PRO ALA TRP GLY CYS GLU CYS ALA ALA CYS SEQRES 3 A 258 ALA ARG ALA ARG ARG SER PRO GLN TYR ARG ARG GLN PRO SEQRES 4 A 258 CYS SER GLY VAL VAL LYS PHE ASN ASP ALA ILE THR LEU SEQRES 5 A 258 ILE ASP ALA GLY LEU HIS ASP LEU ALA ASP ARG TRP SER SEQRES 6 A 258 PRO GLY SER PHE GLN GLN PHE LEU LEU THR HIS TYR HIS SEQRES 7 A 258 MET ASP HIS VAL GLN GLY LEU PHE PRO LEU ARG TRP GLY SEQRES 8 A 258 VAL GLY ASP PRO ILE PRO VAL TYR GLY PRO PRO ASP GLU SEQRES 9 A 258 GLN GLY CYS ASP ASP LEU PHE LYS HIS PRO GLY LEU LEU SEQRES 10 A 258 ASP PHE SER HIS THR VAL GLU PRO PHE VAL VAL PHE ASP SEQRES 11 A 258 LEU GLN GLY LEU GLN VAL THR PRO LEU PRO LEU ASN HIS SEQRES 12 A 258 SER LYS LEU THR PHE GLY TYR LEU LEU GLU THR ALA HIS SEQRES 13 A 258 SER ARG VAL ALA TRP LEU SER ASP THR ALA GLY LEU PRO SEQRES 14 A 258 GLU LYS THR LEU LYS PHE LEU ARG ASN ASN GLN PRO GLN SEQRES 15 A 258 VAL MET VAL MET ASP CYS SER HIS PRO PRO ARG ALA ASP SEQRES 16 A 258 ALA PRO ARG ASN HIS CYS ASP LEU ASN THR VAL LEU ALA SEQRES 17 A 258 LEU ASN GLN VAL ILE ARG SER PRO ARG VAL ILE LEU THR SEQRES 18 A 258 HIS ILE SER HIS GLN PHE ASP ALA TRP LEU MET GLU ASN SEQRES 19 A 258 ALA LEU PRO SER GLY PHE GLU VAL GLY PHE ASP GLY MET SEQRES 20 A 258 GLU ILE GLY VAL ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 258 MET SER LEU THR LEU THR LEU THR GLY THR GLY GLY ALA SEQRES 2 B 258 GLN GLY VAL PRO ALA TRP GLY CYS GLU CYS ALA ALA CYS SEQRES 3 B 258 ALA ARG ALA ARG ARG SER PRO GLN TYR ARG ARG GLN PRO SEQRES 4 B 258 CYS SER GLY VAL VAL LYS PHE ASN ASP ALA ILE THR LEU SEQRES 5 B 258 ILE ASP ALA GLY LEU HIS ASP LEU ALA ASP ARG TRP SER SEQRES 6 B 258 PRO GLY SER PHE GLN GLN PHE LEU LEU THR HIS TYR HIS SEQRES 7 B 258 MET ASP HIS VAL GLN GLY LEU PHE PRO LEU ARG TRP GLY SEQRES 8 B 258 VAL GLY ASP PRO ILE PRO VAL TYR GLY PRO PRO ASP GLU SEQRES 9 B 258 GLN GLY CYS ASP ASP LEU PHE LYS HIS PRO GLY LEU LEU SEQRES 10 B 258 ASP PHE SER HIS THR VAL GLU PRO PHE VAL VAL PHE ASP SEQRES 11 B 258 LEU GLN GLY LEU GLN VAL THR PRO LEU PRO LEU ASN HIS SEQRES 12 B 258 SER LYS LEU THR PHE GLY TYR LEU LEU GLU THR ALA HIS SEQRES 13 B 258 SER ARG VAL ALA TRP LEU SER ASP THR ALA GLY LEU PRO SEQRES 14 B 258 GLU LYS THR LEU LYS PHE LEU ARG ASN ASN GLN PRO GLN SEQRES 15 B 258 VAL MET VAL MET ASP CYS SER HIS PRO PRO ARG ALA ASP SEQRES 16 B 258 ALA PRO ARG ASN HIS CYS ASP LEU ASN THR VAL LEU ALA SEQRES 17 B 258 LEU ASN GLN VAL ILE ARG SER PRO ARG VAL ILE LEU THR SEQRES 18 B 258 HIS ILE SER HIS GLN PHE ASP ALA TRP LEU MET GLU ASN SEQRES 19 B 258 ALA LEU PRO SER GLY PHE GLU VAL GLY PHE ASP GLY MET SEQRES 20 B 258 GLU ILE GLY VAL ALA HIS HIS HIS HIS HIS HIS HET VO4 A 259 5 HET MN A 260 1 HET MN A 261 1 HET ZN A 262 1 HET VO4 B 259 5 HET MN B 260 1 HET MN B 261 1 HET ZN B 262 1 HETNAM VO4 VANADATE ION HETNAM MN MANGANESE (II) ION HETNAM ZN ZINC ION FORMUL 3 VO4 2(O4 V 3-) FORMUL 4 MN 4(MN 2+) FORMUL 6 ZN 2(ZN 2+) FORMUL 11 HOH *521(H2 O) HELIX 1 1 CYS A 23 SER A 32 1 10 HELIX 2 2 PRO A 33 ARG A 36 5 4 HELIX 3 3 ASP A 59 TRP A 64 1 6 HELIX 4 4 HIS A 78 GLN A 83 1 6 HELIX 5 5 GLY A 84 ARG A 89 1 6 HELIX 6 6 PRO A 169 ASN A 179 1 11 HELIX 7 7 ASP A 202 ARG A 214 1 13 HELIX 8 8 SER A 224 MET A 232 1 9 HELIX 9 9 CYS B 23 SER B 32 1 10 HELIX 10 10 PRO B 33 ARG B 36 5 4 HELIX 11 11 ASP B 59 TRP B 64 1 6 HELIX 12 12 HIS B 78 GLN B 83 1 6 HELIX 13 13 GLY B 84 ARG B 89 1 6 HELIX 14 14 PRO B 169 ASN B 179 1 11 HELIX 15 15 ASP B 202 ARG B 214 1 13 HELIX 16 16 SER B 224 MET B 232 1 9 SHEET 1 A 7 LEU A 117 THR A 122 0 SHEET 2 A 7 ILE A 96 GLY A 100 1 N VAL A 98 O ASP A 118 SHEET 3 A 7 GLN A 71 LEU A 73 1 N PHE A 72 O TYR A 99 SHEET 4 A 7 ALA A 49 ILE A 53 1 N LEU A 52 O LEU A 73 SHEET 5 A 7 SER A 41 PHE A 46 -1 N VAL A 44 O THR A 51 SHEET 6 A 7 LEU A 3 GLY A 9 -1 N THR A 4 O LYS A 45 SHEET 7 A 7 MET A 247 ILE A 249 -1 O ILE A 249 N LEU A 5 SHEET 1 B 7 PHE A 129 LEU A 131 0 SHEET 2 B 7 LEU A 134 PRO A 140 -1 O VAL A 136 N PHE A 129 SHEET 3 B 7 PHE A 148 GLU A 153 -1 O GLY A 149 N LEU A 139 SHEET 4 B 7 ARG A 158 LEU A 162 -1 O VAL A 159 N LEU A 152 SHEET 5 B 7 VAL A 183 ASP A 187 1 O VAL A 185 N ALA A 160 SHEET 6 B 7 VAL A 218 THR A 221 1 O ILE A 219 N MET A 184 SHEET 7 B 7 PHE A 240 VAL A 242 1 O GLU A 241 N LEU A 220 SHEET 1 C 7 LEU B 117 THR B 122 0 SHEET 2 C 7 ILE B 96 GLY B 100 1 N ILE B 96 O ASP B 118 SHEET 3 C 7 GLN B 71 LEU B 73 1 N PHE B 72 O TYR B 99 SHEET 4 C 7 ALA B 49 ILE B 53 1 N LEU B 52 O LEU B 73 SHEET 5 C 7 SER B 41 PHE B 46 -1 N VAL B 44 O THR B 51 SHEET 6 C 7 LEU B 3 GLY B 9 -1 N THR B 4 O LYS B 45 SHEET 7 C 7 MET B 247 GLY B 250 -1 O ILE B 249 N LEU B 5 SHEET 1 D 7 PHE B 129 LEU B 131 0 SHEET 2 D 7 LEU B 134 PRO B 140 -1 O VAL B 136 N PHE B 129 SHEET 3 D 7 PHE B 148 THR B 154 -1 O GLY B 149 N LEU B 139 SHEET 4 D 7 SER B 157 LEU B 162 -1 O VAL B 159 N LEU B 152 SHEET 5 D 7 VAL B 183 ASP B 187 1 O VAL B 185 N LEU B 162 SHEET 6 D 7 VAL B 218 THR B 221 1 O ILE B 219 N MET B 184 SHEET 7 D 7 PHE B 240 VAL B 242 1 O GLU B 241 N LEU B 220 LINK SG CYS A 21 ZN ZN A 262 1555 1555 2.32 LINK SG CYS A 23 ZN ZN A 262 1555 1555 2.35 LINK SG CYS A 26 ZN ZN A 262 1555 1555 2.29 LINK NE2 HIS A 76 MN MN A 260 1555 1555 2.19 LINK ND1 HIS A 78 MN MN A 260 1555 1555 2.16 LINK OD2 ASP A 80 MN MN A 261 1555 1555 2.52 LINK NE2 HIS A 81 MN MN A 261 1555 1555 2.29 LINK NE2 HIS A 143 MN MN A 260 1555 1555 2.13 LINK OD2 ASP A 164 MN MN A 260 1555 1555 2.45 LINK OD2 ASP A 164 MN MN A 261 1555 1555 2.24 LINK NE2 HIS A 222 MN MN A 261 1555 1555 2.40 LINK ND1 HIS A 225 ZN ZN A 262 1555 1555 2.12 LINK O1 VO4 A 259 MN MN A 260 1555 1555 2.17 LINK O2 VO4 A 259 MN MN A 261 1555 1555 2.02 LINK MN MN A 260 O HOH A 272 1555 1555 2.07 LINK MN MN A 261 O HOH A 272 1555 1555 2.32 LINK SG CYS B 21 ZN ZN B 262 1555 1555 2.31 LINK SG CYS B 23 ZN ZN B 262 1555 1555 2.33 LINK SG CYS B 26 ZN ZN B 262 1555 1555 2.30 LINK NE2 HIS B 76 MN MN B 261 1555 1555 2.16 LINK ND1 HIS B 78 MN MN B 261 1555 1555 2.14 LINK OD2 ASP B 80 MN MN B 260 1555 1555 2.37 LINK NE2 HIS B 81 MN MN B 260 1555 1555 2.24 LINK NE2 HIS B 143 MN MN B 261 1555 1555 2.14 LINK OD2 ASP B 164 MN MN B 260 1555 1555 2.22 LINK OD2 ASP B 164 MN MN B 261 1555 1555 2.43 LINK NE2 HIS B 222 MN MN B 260 1555 1555 2.30 LINK ND1 HIS B 225 ZN ZN B 262 1555 1555 2.10 LINK O1 VO4 B 259 MN MN B 260 1555 1555 2.03 LINK O3 VO4 B 259 MN MN B 261 1555 1555 2.05 LINK MN MN B 260 O HOH B 277 1555 1555 2.21 LINK MN MN B 261 O HOH B 277 1555 1555 2.05 CISPEP 1 VAL A 16 PRO A 17 0 1.51 CISPEP 2 SER A 163 ASP A 164 0 -1.97 CISPEP 3 ALA A 196 PRO A 197 0 -4.70 CISPEP 4 VAL B 16 PRO B 17 0 2.22 CISPEP 5 VAL B 16 PRO B 17 0 -0.39 CISPEP 6 SER B 163 ASP B 164 0 1.48 SITE 1 AC1 12 HIS B 78 ASP B 80 HIS B 143 ASP B 164 SITE 2 AC1 12 HIS B 200 HIS B 222 MN B 260 MN B 261 SITE 3 AC1 12 HOH B 277 HOH B 371 HOH B 407 HOH B 428 SITE 1 AC2 12 HIS A 78 ASP A 80 HIS A 143 ASP A 164 SITE 2 AC2 12 ASN A 199 HIS A 200 HIS A 222 MN A 260 SITE 3 AC2 12 MN A 261 HOH A 272 HOH A 345 HOH A 376 SITE 1 AC3 7 HIS A 76 HIS A 78 HIS A 143 ASP A 164 SITE 2 AC3 7 VO4 A 259 MN A 261 HOH A 272 SITE 1 AC4 7 ASP A 80 HIS A 81 ASP A 164 HIS A 222 SITE 2 AC4 7 VO4 A 259 MN A 260 HOH A 272 SITE 1 AC5 7 ASP B 80 HIS B 81 ASP B 164 HIS B 222 SITE 2 AC5 7 VO4 B 259 MN B 261 HOH B 277 SITE 1 AC6 7 HIS B 76 HIS B 78 HIS B 143 ASP B 164 SITE 2 AC6 7 VO4 B 259 MN B 260 HOH B 277 SITE 1 AC7 4 CYS A 21 CYS A 23 CYS A 26 HIS A 225 SITE 1 AC8 4 CYS B 21 CYS B 23 CYS B 26 HIS B 225 CRYST1 110.761 75.285 82.423 90.00 125.52 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009028 0.000000 0.006444 0.00000 SCALE2 0.000000 0.013283 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014906 0.00000