HEADER OXIDOREDUCTASE 04-OCT-10 3P2Y TITLE CRYSTAL STRUCTURE OF ALANINE DEHYDROGENASE/PYRIDINE NUCLEOTIDE TITLE 2 TRANSHYDROGENASE FROM MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE DEHYDROGENASE/PYRIDINE NUCLEOTIDE TRANSHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.4.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS STR. MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: MSMEG_0152; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 2 TUBERCULOSIS, NON-PATHOGENIC SPECIES, ORTHOLOG, DEHYDROGENASE, KEYWDS 3 PYRUVATE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 06-SEP-23 3P2Y 1 REMARK SEQADV LINK REVDAT 2 22-APR-15 3P2Y 1 JRNL VERSN REVDAT 1 13-OCT-10 3P2Y 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 38192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1913 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2186 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.1960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2462 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.890 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2593 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3570 ; 1.428 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 5.184 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;38.044 ;24.186 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 400 ;11.042 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;22.038 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1939 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1764 ; 0.845 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2849 ; 1.509 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 829 ; 2.414 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 705 ; 4.225 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): 66.1533 39.4878 -13.0551 REMARK 3 T TENSOR REMARK 3 T11: 0.0137 T22: 0.0668 REMARK 3 T33: 0.0444 T12: -0.0021 REMARK 3 T13: 0.0031 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.5457 L22: 0.4315 REMARK 3 L33: 0.5017 L12: -0.0021 REMARK 3 L13: -0.0687 L23: -0.0137 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: 0.0116 S13: -0.0873 REMARK 3 S21: -0.0454 S22: 0.0106 S23: -0.0443 REMARK 3 S31: -0.0547 S32: 0.0066 S33: -0.0539 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 57.0036 49.8573 -4.3285 REMARK 3 T TENSOR REMARK 3 T11: 0.0272 T22: 0.0667 REMARK 3 T33: 0.0542 T12: -0.0016 REMARK 3 T13: 0.0177 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 0.0119 L22: 0.1665 REMARK 3 L33: 0.4034 L12: -0.0005 REMARK 3 L13: 0.0438 L23: -0.0343 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: -0.0013 S13: 0.0129 REMARK 3 S21: 0.0047 S22: 0.0103 S23: -0.0265 REMARK 3 S31: -0.0506 S32: -0.0577 S33: -0.0176 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): 49.0027 47.5680 18.8239 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: 0.0426 REMARK 3 T33: 0.0419 T12: -0.0040 REMARK 3 T13: -0.0015 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.9893 L22: 0.2869 REMARK 3 L33: 0.3359 L12: -0.0324 REMARK 3 L13: 0.2252 L23: -0.1908 REMARK 3 S TENSOR REMARK 3 S11: -0.0244 S12: -0.0234 S13: 0.1104 REMARK 3 S21: 0.0512 S22: 0.0143 S23: 0.0209 REMARK 3 S31: -0.0578 S32: -0.0518 S33: 0.0101 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 307 A 356 REMARK 3 ORIGIN FOR THE GROUP (A): 53.2564 46.1756 -12.3095 REMARK 3 T TENSOR REMARK 3 T11: 0.0087 T22: 0.0847 REMARK 3 T33: 0.0437 T12: -0.0058 REMARK 3 T13: -0.0060 T23: 0.0517 REMARK 3 L TENSOR REMARK 3 L11: 0.1950 L22: 0.4772 REMARK 3 L33: 0.5473 L12: 0.1847 REMARK 3 L13: 0.1267 L23: -0.2498 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: 0.0255 S13: 0.0518 REMARK 3 S21: -0.0284 S22: 0.0134 S23: 0.0832 REMARK 3 S31: 0.0669 S32: -0.0043 S33: -0.0278 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3P2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38305 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 17.30 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 42.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.2 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 11.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 1L7D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21.6 MG/ML MYSMA.00681.A.A1 PS00596 REMARK 280 AGAINST PACT SCREEN CONDITION C11 20% PEG 6000, 0.1 M HEPES PH REMARK 280 7.0, 0.2 M CACL2, CRYO-PROTECTED WITH 25% ETHYLENE GLYCOL, REMARK 280 CRYSTAL TRACKING ID 215904C11, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.85667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 119.71333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.78500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 149.64167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.92833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.85667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 119.71333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 149.64167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 89.78500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 29.92833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 29.92833 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 361 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 701 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 ILE A 214 REMARK 465 ASP A 215 REMARK 465 ALA A 216 REMARK 465 ALA A 217 REMARK 465 GLY A 218 REMARK 465 GLU A 219 REMARK 465 GLY A 220 REMARK 465 GLY A 221 REMARK 465 TYR A 222 REMARK 465 ALA A 223 REMARK 465 ARG A 224 REMARK 465 GLU A 225 REMARK 465 LEU A 226 REMARK 465 GLU A 357 REMARK 465 GLY A 358 REMARK 465 ASP A 359 REMARK 465 ILE A 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 SER A 227 OG REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 ARG A 231 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 233 CG CD OE1 NE2 REMARK 470 ASP A 336 CG OD1 OD2 REMARK 470 THR A 356 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 70 -72.99 -94.11 REMARK 500 VAL A 171 67.99 -117.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 361 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 1 O REMARK 620 2 HOH A 701 O 86.9 REMARK 620 3 HOH A 702 O 84.8 73.5 REMARK 620 4 HOH A 703 O 102.8 146.2 75.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 362 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 55 O REMARK 620 2 HOH A 557 O 75.7 REMARK 620 3 HOH A 571 O 91.6 78.7 REMARK 620 4 HOH A 707 O 85.9 92.4 171.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 364 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 244 O REMARK 620 2 HOH A 533 O 88.7 REMARK 620 3 HOH A 556 O 157.1 78.4 REMARK 620 4 HOH A 579 O 77.5 83.0 82.2 REMARK 620 5 HOH A 600 O 87.5 159.9 98.1 76.9 REMARK 620 6 HOH A 720 O 69.7 79.8 125.2 143.0 117.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 363 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 331 O REMARK 620 2 LEU A 334 O 91.9 REMARK 620 3 HOH A 503 O 87.4 85.9 REMARK 620 4 HOH A 671 O 84.9 87.6 169.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 366 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYSMA.00681.A RELATED DB: TARGETDB DBREF 3P2Y A 1 360 UNP A0QNT0 A0QNT0_MYCS2 1 360 SEQADV 3P2Y MET A -20 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y ALA A -19 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y HIS A -18 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y HIS A -17 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y HIS A -16 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y HIS A -15 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y HIS A -14 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y HIS A -13 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y MET A -12 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y GLY A -11 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y THR A -10 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y LEU A -9 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y GLU A -8 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y ALA A -7 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y GLN A -6 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y THR A -5 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y GLN A -4 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y GLY A -3 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y PRO A -2 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y GLY A -1 UNP A0QNT0 EXPRESSION TAG SEQADV 3P2Y SER A 0 UNP A0QNT0 EXPRESSION TAG SEQRES 1 A 381 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 381 ALA GLN THR GLN GLY PRO GLY SER MET THR LEU ILE GLY SEQRES 3 A 381 VAL PRO ARG GLU SER ALA GLU GLY GLU ARG ARG VAL ALA SEQRES 4 A 381 LEU VAL PRO LYS VAL VAL GLU LYS LEU SER ALA ARG GLY SEQRES 5 A 381 LEU GLU VAL VAL VAL GLU SER ALA ALA GLY ALA GLY ALA SEQRES 6 A 381 LEU PHE SER ASP ALA ASP TYR GLU ARG ALA GLY ALA THR SEQRES 7 A 381 ILE GLY ASP PRO TRP PRO ALA ASP VAL VAL VAL LYS VAL SEQRES 8 A 381 ASN PRO PRO THR SER ASP GLU ILE SER GLN LEU LYS PRO SEQRES 9 A 381 GLY SER VAL LEU ILE GLY PHE LEU ALA PRO ARG THR GLN SEQRES 10 A 381 PRO GLU LEU ALA SER ARG LEU ARG ILE ALA ASP VAL THR SEQRES 11 A 381 ALA PHE ALA MET GLU SER ILE PRO ARG ILE SER ARG ALA SEQRES 12 A 381 GLN THR MET ASP ALA LEU SER SER GLN ALA ASN VAL ALA SEQRES 13 A 381 GLY TYR LYS ALA VAL LEU LEU GLY ALA SER LEU SER THR SEQRES 14 A 381 ARG PHE VAL PRO MET LEU THR THR ALA ALA GLY THR VAL SEQRES 15 A 381 LYS PRO ALA SER ALA LEU VAL LEU GLY VAL GLY VAL ALA SEQRES 16 A 381 GLY LEU GLN ALA LEU ALA THR ALA LYS ARG LEU GLY ALA SEQRES 17 A 381 LYS THR THR GLY TYR ASP VAL ARG PRO GLU VAL ALA GLU SEQRES 18 A 381 GLN VAL ARG SER VAL GLY ALA GLN TRP LEU ASP LEU GLY SEQRES 19 A 381 ILE ASP ALA ALA GLY GLU GLY GLY TYR ALA ARG GLU LEU SEQRES 20 A 381 SER GLU ALA GLU ARG ALA GLN GLN GLN GLN ALA LEU GLU SEQRES 21 A 381 ASP ALA ILE THR LYS PHE ASP ILE VAL ILE THR THR ALA SEQRES 22 A 381 LEU VAL PRO GLY ARG PRO ALA PRO ARG LEU VAL THR ALA SEQRES 23 A 381 ALA ALA ALA THR GLY MET GLN PRO GLY SER VAL VAL VAL SEQRES 24 A 381 ASP LEU ALA GLY GLU THR GLY GLY ASN CYS GLU LEU THR SEQRES 25 A 381 GLU PRO GLY ARG THR ILE VAL HIS HIS GLY VAL THR ILE SEQRES 26 A 381 THR SER PRO LEU ASN LEU PRO ALA THR MET PRO GLU HIS SEQRES 27 A 381 ALA SER GLU LEU TYR ALA LYS ASN VAL THR ALA LEU LEU SEQRES 28 A 381 ASP LEU LEU LEU THR ASP ASP GLY VAL ALA PRO ASP PHE SEQRES 29 A 381 THR ASP GLU ILE VAL ALA ALA SER CYS ILE THR ARG THR SEQRES 30 A 381 GLU GLY ASP ILE HET CA A 361 1 HET CA A 362 1 HET CA A 363 1 HET NA A 364 1 HET EDO A 365 4 HET EDO A 366 4 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA 3(CA 2+) FORMUL 5 NA NA 1+ FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 HOH *376(H2 O) HELIX 1 1 VAL A 20 ARG A 30 1 11 HELIX 2 2 GLY A 41 LEU A 45 5 5 HELIX 3 3 SER A 47 ALA A 54 1 8 HELIX 4 4 THR A 74 SER A 79 1 6 HELIX 5 5 GLN A 96 ALA A 106 1 11 HELIX 6 6 GLU A 114 ILE A 116 5 3 HELIX 7 7 ILE A 119 MET A 125 5 7 HELIX 8 8 ASP A 126 SER A 147 1 22 HELIX 9 9 GLY A 172 GLY A 186 1 15 HELIX 10 10 ARG A 195 GLU A 197 5 3 HELIX 11 11 VAL A 198 VAL A 205 1 8 HELIX 12 12 SER A 227 THR A 243 1 17 HELIX 13 13 THR A 264 GLY A 270 1 7 HELIX 14 14 ALA A 281 GLY A 285 5 5 HELIX 15 15 LEU A 310 THR A 313 5 4 HELIX 16 16 MET A 314 LEU A 333 1 20 HELIX 17 17 ASP A 345 CYS A 352 1 8 SHEET 1 A 6 THR A 57 ILE A 58 0 SHEET 2 A 6 GLU A 33 VAL A 36 1 N VAL A 36 O THR A 57 SHEET 3 A 6 LEU A 3 VAL A 6 1 N ILE A 4 O GLU A 33 SHEET 4 A 6 VAL A 66 VAL A 68 1 O VAL A 66 N GLY A 5 SHEET 5 A 6 VAL A 86 GLY A 89 1 O VAL A 86 N VAL A 67 SHEET 6 A 6 THR A 109 ALA A 112 1 O PHE A 111 N LEU A 87 SHEET 1 B 2 LEU A 154 THR A 155 0 SHEET 2 B 2 THR A 160 VAL A 161 -1 O VAL A 161 N LEU A 154 SHEET 1 C 7 GLN A 208 TRP A 209 0 SHEET 2 C 7 LYS A 188 TYR A 192 1 N GLY A 191 O GLN A 208 SHEET 3 C 7 SER A 165 LEU A 169 1 N ALA A 166 O LYS A 188 SHEET 4 C 7 ILE A 247 THR A 250 1 O ILE A 249 N LEU A 169 SHEET 5 C 7 VAL A 276 ASP A 279 1 O VAL A 278 N VAL A 248 SHEET 6 C 7 VAL A 302 THR A 305 1 O THR A 305 N VAL A 277 SHEET 7 C 7 THR A 296 HIS A 299 -1 N ILE A 297 O ILE A 304 SHEET 1 D 2 LEU A 334 THR A 335 0 SHEET 2 D 2 GLY A 338 VAL A 339 -1 O GLY A 338 N THR A 335 LINK O MET A 1 CA CA A 361 1555 1555 2.47 LINK O GLY A 55 CA CA A 362 1555 1555 2.32 LINK O LYS A 244 NA NA A 364 1555 1555 2.65 LINK O ASP A 331 CA CA A 363 1555 1555 2.32 LINK O LEU A 334 CA CA A 363 1555 1555 2.47 LINK CA CA A 361 O HOH A 701 1555 1555 2.34 LINK CA CA A 361 O HOH A 702 1555 1555 2.37 LINK CA CA A 361 O HOH A 703 1555 1555 2.40 LINK CA CA A 362 O HOH A 557 1555 1555 2.51 LINK CA CA A 362 O HOH A 571 1555 1555 2.26 LINK CA CA A 362 O HOH A 707 1555 1555 2.27 LINK CA CA A 363 O HOH A 503 1555 1555 2.39 LINK CA CA A 363 O HOH A 671 1555 1555 2.28 LINK NA NA A 364 O HOH A 533 1555 1555 2.28 LINK NA NA A 364 O HOH A 556 1555 1555 2.50 LINK NA NA A 364 O HOH A 579 1555 1555 2.99 LINK NA NA A 364 O HOH A 600 1555 1555 2.65 LINK NA NA A 364 O HOH A 720 1555 1555 2.70 SITE 1 AC1 4 MET A 1 HOH A 701 HOH A 702 HOH A 703 SITE 1 AC2 4 GLY A 55 HOH A 557 HOH A 571 HOH A 707 SITE 1 AC3 4 ASP A 331 LEU A 334 HOH A 503 HOH A 671 SITE 1 AC4 6 LYS A 244 HOH A 533 HOH A 556 HOH A 579 SITE 2 AC4 6 HOH A 600 HOH A 720 SITE 1 AC5 6 GLY A 294 ARG A 295 THR A 296 THR A 305 SITE 2 AC5 6 HOH A 516 HOH A 696 SITE 1 AC6 6 LYS A 138 LEU A 142 SER A 145 LEU A 310 SITE 2 AC6 6 HOH A 388 HOH A 434 CRYST1 89.760 89.760 179.570 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011141 0.006432 0.000000 0.00000 SCALE2 0.000000 0.012864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005569 0.00000