HEADER TRANSFERASE 04-OCT-10 3P35 TITLE POLO-LIKE KINASE I POLO-BOX DOMAIN IN COMPLEX WITH MQSPSPL TITLE 2 PHOSPHOPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: POLO-BOX DOMAIN; COMPND 5 SYNONYM: POLO-LIKE KINASE 1, PLK-1, SERINE/THREONINE-PROTEIN KINASE COMPND 6 13, STPK13; COMPND 7 EC: 2.7.11.21; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PHOSPHOPEPTIDE; COMPND 11 CHAIN: D, E; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK1, PLK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS PHOSPHOPROTEIN BINDING DOMAIN, PLK1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.SLEDZ,M.HYVONEN,C.ABELL REVDAT 3 30-OCT-24 3P35 1 REMARK REVDAT 2 01-NOV-23 3P35 1 REMARK SEQADV LINK REVDAT 1 27-APR-11 3P35 0 JRNL AUTH P.SLEDZ,C.J.STUBBS,S.LANG,Y.Q.YANG,G.J.MCKENZIE, JRNL AUTH 2 A.R.VENKITARAMAN,M.HYVONEN,C.ABELL JRNL TITL FROM CRYSTAL PACKING TO MOLECULAR RECOGNITION: PREDICTION JRNL TITL 2 AND DISCOVERY OF A BINDING SITE ON THE SURFACE OF POLO-LIKE JRNL TITL 3 KINASE 1 JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 50 4003 2011 JRNL REFN ISSN 1433-7851 JRNL PMID 21472932 JRNL DOI 10.1002/ANIE.201008019 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 36378 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1921 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2605 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 486 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.586 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5697 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7723 ; 1.020 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 701 ; 5.312 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;30.673 ;22.996 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1022 ;16.853 ;15.029 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;10.551 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 853 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4266 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3416 ; 0.313 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5528 ; 0.610 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2281 ; 0.869 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2179 ; 1.452 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 375 A 590 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3430 9.3220 28.6290 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: 0.0843 REMARK 3 T33: 0.0194 T12: 0.0123 REMARK 3 T13: 0.0003 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 0.6824 L22: 1.8763 REMARK 3 L33: 1.3795 L12: 0.0936 REMARK 3 L13: -0.0136 L23: 0.9423 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: -0.0257 S13: -0.0063 REMARK 3 S21: 0.0570 S22: -0.0597 S23: 0.0564 REMARK 3 S31: -0.0008 S32: -0.0270 S33: 0.0207 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 375 B 590 REMARK 3 ORIGIN FOR THE GROUP (A): 37.2380 6.9340 47.0240 REMARK 3 T TENSOR REMARK 3 T11: 0.0064 T22: 0.0653 REMARK 3 T33: 0.0119 T12: -0.0003 REMARK 3 T13: -0.0011 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.9566 L22: 1.7914 REMARK 3 L33: 2.4082 L12: 0.3267 REMARK 3 L13: 0.2127 L23: 1.1399 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: -0.0582 S13: -0.0446 REMARK 3 S21: 0.0654 S22: 0.0097 S23: -0.0112 REMARK 3 S31: 0.0514 S32: 0.0677 S33: -0.0129 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 375 C 590 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5020 6.3790 66.3510 REMARK 3 T TENSOR REMARK 3 T11: 0.0205 T22: 0.0742 REMARK 3 T33: 0.0058 T12: 0.0025 REMARK 3 T13: 0.0005 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.8755 L22: 2.2341 REMARK 3 L33: 1.1073 L12: 0.1578 REMARK 3 L13: 0.2461 L23: 0.6934 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: -0.0106 S13: 0.0038 REMARK 3 S21: 0.0169 S22: -0.0008 S23: -0.0433 REMARK 3 S31: -0.0184 S32: 0.0167 S33: -0.0076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P35 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38299 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 59.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UMW (CHAIN A) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM FORMATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.91400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 PRO A 6 REMARK 465 GLU A 7 REMARK 465 PHE A 8 REMARK 465 ASP A 371 REMARK 465 GLU A 501 REMARK 465 GLY A 502 REMARK 465 ASP A 503 REMARK 465 GLU A 504 REMARK 465 LEU A 505 REMARK 465 ALA A 506 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 PRO B 6 REMARK 465 GLU B 7 REMARK 465 PHE B 8 REMARK 465 ASP B 371 REMARK 465 ARG B 594 REMARK 465 GLY C 1 REMARK 465 PRO C 2 REMARK 465 LEU C 3 REMARK 465 GLY C 4 REMARK 465 SER C 5 REMARK 465 PRO C 6 REMARK 465 GLU C 7 REMARK 465 PHE C 8 REMARK 465 ASP C 371 REMARK 465 ARG C 594 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 372 SG REMARK 470 ARG A 512 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 555 CG CD OE1 OE2 REMARK 470 ARG A 594 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 456 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 503 CG OD1 OD2 REMARK 470 GLU C 555 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 391 54.18 -96.77 REMARK 500 LYS A 420 -40.29 -139.02 REMARK 500 ASP A 449 -39.13 -142.67 REMARK 500 ARG B 396 52.76 -118.66 REMARK 500 ASN B 430 -1.15 84.80 REMARK 500 ASP B 449 -43.61 -138.80 REMARK 500 TYR C 417 50.40 -119.96 REMARK 500 ASN C 430 4.34 80.50 REMARK 500 ASP C 449 -43.24 -139.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 595 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 596 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 595 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 596 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 597 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3P2W RELATED DB: PDB REMARK 900 RELATED ID: 3P2Z RELATED DB: PDB REMARK 900 RELATED ID: 3P34 RELATED DB: PDB REMARK 900 RELATED ID: 3P36 RELATED DB: PDB REMARK 900 RELATED ID: 3P37 RELATED DB: PDB DBREF 3P35 A 371 594 UNP P53350 PLK1_HUMAN 371 594 DBREF 3P35 B 371 594 UNP P53350 PLK1_HUMAN 371 594 DBREF 3P35 C 371 594 UNP P53350 PLK1_HUMAN 371 594 DBREF 3P35 D 0 7 PDB 3P35 3P35 0 7 DBREF 3P35 E 0 7 PDB 3P35 3P35 0 7 SEQADV 3P35 GLY A 1 UNP P53350 EXPRESSION TAG SEQADV 3P35 PRO A 2 UNP P53350 EXPRESSION TAG SEQADV 3P35 LEU A 3 UNP P53350 EXPRESSION TAG SEQADV 3P35 GLY A 4 UNP P53350 EXPRESSION TAG SEQADV 3P35 SER A 5 UNP P53350 EXPRESSION TAG SEQADV 3P35 PRO A 6 UNP P53350 EXPRESSION TAG SEQADV 3P35 GLU A 7 UNP P53350 EXPRESSION TAG SEQADV 3P35 PHE A 8 UNP P53350 EXPRESSION TAG SEQADV 3P35 GLY B 1 UNP P53350 EXPRESSION TAG SEQADV 3P35 PRO B 2 UNP P53350 EXPRESSION TAG SEQADV 3P35 LEU B 3 UNP P53350 EXPRESSION TAG SEQADV 3P35 GLY B 4 UNP P53350 EXPRESSION TAG SEQADV 3P35 SER B 5 UNP P53350 EXPRESSION TAG SEQADV 3P35 PRO B 6 UNP P53350 EXPRESSION TAG SEQADV 3P35 GLU B 7 UNP P53350 EXPRESSION TAG SEQADV 3P35 PHE B 8 UNP P53350 EXPRESSION TAG SEQADV 3P35 GLY C 1 UNP P53350 EXPRESSION TAG SEQADV 3P35 PRO C 2 UNP P53350 EXPRESSION TAG SEQADV 3P35 LEU C 3 UNP P53350 EXPRESSION TAG SEQADV 3P35 GLY C 4 UNP P53350 EXPRESSION TAG SEQADV 3P35 SER C 5 UNP P53350 EXPRESSION TAG SEQADV 3P35 PRO C 6 UNP P53350 EXPRESSION TAG SEQADV 3P35 GLU C 7 UNP P53350 EXPRESSION TAG SEQADV 3P35 PHE C 8 UNP P53350 EXPRESSION TAG SEQRES 1 A 232 GLY PRO LEU GLY SER PRO GLU PHE ASP CYS HIS LEU SER SEQRES 2 A 232 ASP MET LEU GLN GLN LEU HIS SER VAL ASN ALA SER LYS SEQRES 3 A 232 PRO SER GLU ARG GLY LEU VAL ARG GLN GLU GLU ALA GLU SEQRES 4 A 232 ASP PRO ALA CYS ILE PRO ILE PHE TRP VAL SER LYS TRP SEQRES 5 A 232 VAL ASP TYR SER ASP LYS TYR GLY LEU GLY TYR GLN LEU SEQRES 6 A 232 CYS ASP ASN SER VAL GLY VAL LEU PHE ASN ASP SER THR SEQRES 7 A 232 ARG LEU ILE LEU TYR ASN ASP GLY ASP SER LEU GLN TYR SEQRES 8 A 232 ILE GLU ARG ASP GLY THR GLU SER TYR LEU THR VAL SER SEQRES 9 A 232 SER HIS PRO ASN SER LEU MET LYS LYS ILE THR LEU LEU SEQRES 10 A 232 LYS TYR PHE ARG ASN TYR MET SER GLU HIS LEU LEU LYS SEQRES 11 A 232 ALA GLY ALA ASN ILE THR PRO ARG GLU GLY ASP GLU LEU SEQRES 12 A 232 ALA ARG LEU PRO TYR LEU ARG THR TRP PHE ARG THR ARG SEQRES 13 A 232 SER ALA ILE ILE LEU HIS LEU SER ASN GLY SER VAL GLN SEQRES 14 A 232 ILE ASN PHE PHE GLN ASP HIS THR LYS LEU ILE LEU CYS SEQRES 15 A 232 PRO LEU MET ALA ALA VAL THR TYR ILE ASP GLU LYS ARG SEQRES 16 A 232 ASP PHE ARG THR TYR ARG LEU SER LEU LEU GLU GLU TYR SEQRES 17 A 232 GLY CYS CYS LYS GLU LEU ALA SER ARG LEU ARG TYR ALA SEQRES 18 A 232 ARG THR MET VAL ASP LYS LEU LEU SER SER ARG SEQRES 1 B 232 GLY PRO LEU GLY SER PRO GLU PHE ASP CYS HIS LEU SER SEQRES 2 B 232 ASP MET LEU GLN GLN LEU HIS SER VAL ASN ALA SER LYS SEQRES 3 B 232 PRO SER GLU ARG GLY LEU VAL ARG GLN GLU GLU ALA GLU SEQRES 4 B 232 ASP PRO ALA CYS ILE PRO ILE PHE TRP VAL SER LYS TRP SEQRES 5 B 232 VAL ASP TYR SER ASP LYS TYR GLY LEU GLY TYR GLN LEU SEQRES 6 B 232 CYS ASP ASN SER VAL GLY VAL LEU PHE ASN ASP SER THR SEQRES 7 B 232 ARG LEU ILE LEU TYR ASN ASP GLY ASP SER LEU GLN TYR SEQRES 8 B 232 ILE GLU ARG ASP GLY THR GLU SER TYR LEU THR VAL SER SEQRES 9 B 232 SER HIS PRO ASN SER LEU MET LYS LYS ILE THR LEU LEU SEQRES 10 B 232 LYS TYR PHE ARG ASN TYR MET SER GLU HIS LEU LEU LYS SEQRES 11 B 232 ALA GLY ALA ASN ILE THR PRO ARG GLU GLY ASP GLU LEU SEQRES 12 B 232 ALA ARG LEU PRO TYR LEU ARG THR TRP PHE ARG THR ARG SEQRES 13 B 232 SER ALA ILE ILE LEU HIS LEU SER ASN GLY SER VAL GLN SEQRES 14 B 232 ILE ASN PHE PHE GLN ASP HIS THR LYS LEU ILE LEU CYS SEQRES 15 B 232 PRO LEU MET ALA ALA VAL THR TYR ILE ASP GLU LYS ARG SEQRES 16 B 232 ASP PHE ARG THR TYR ARG LEU SER LEU LEU GLU GLU TYR SEQRES 17 B 232 GLY CYS CYS LYS GLU LEU ALA SER ARG LEU ARG TYR ALA SEQRES 18 B 232 ARG THR MET VAL ASP LYS LEU LEU SER SER ARG SEQRES 1 C 232 GLY PRO LEU GLY SER PRO GLU PHE ASP CYS HIS LEU SER SEQRES 2 C 232 ASP MET LEU GLN GLN LEU HIS SER VAL ASN ALA SER LYS SEQRES 3 C 232 PRO SER GLU ARG GLY LEU VAL ARG GLN GLU GLU ALA GLU SEQRES 4 C 232 ASP PRO ALA CYS ILE PRO ILE PHE TRP VAL SER LYS TRP SEQRES 5 C 232 VAL ASP TYR SER ASP LYS TYR GLY LEU GLY TYR GLN LEU SEQRES 6 C 232 CYS ASP ASN SER VAL GLY VAL LEU PHE ASN ASP SER THR SEQRES 7 C 232 ARG LEU ILE LEU TYR ASN ASP GLY ASP SER LEU GLN TYR SEQRES 8 C 232 ILE GLU ARG ASP GLY THR GLU SER TYR LEU THR VAL SER SEQRES 9 C 232 SER HIS PRO ASN SER LEU MET LYS LYS ILE THR LEU LEU SEQRES 10 C 232 LYS TYR PHE ARG ASN TYR MET SER GLU HIS LEU LEU LYS SEQRES 11 C 232 ALA GLY ALA ASN ILE THR PRO ARG GLU GLY ASP GLU LEU SEQRES 12 C 232 ALA ARG LEU PRO TYR LEU ARG THR TRP PHE ARG THR ARG SEQRES 13 C 232 SER ALA ILE ILE LEU HIS LEU SER ASN GLY SER VAL GLN SEQRES 14 C 232 ILE ASN PHE PHE GLN ASP HIS THR LYS LEU ILE LEU CYS SEQRES 15 C 232 PRO LEU MET ALA ALA VAL THR TYR ILE ASP GLU LYS ARG SEQRES 16 C 232 ASP PHE ARG THR TYR ARG LEU SER LEU LEU GLU GLU TYR SEQRES 17 C 232 GLY CYS CYS LYS GLU LEU ALA SER ARG LEU ARG TYR ALA SEQRES 18 C 232 ARG THR MET VAL ASP LYS LEU LEU SER SER ARG SEQRES 1 D 8 ACE MET GLN SER SEP PRO LEU NH2 SEQRES 1 E 8 ACE MET GLN SER SEP PRO LEU NH2 MODRES 3P35 SEP D 4 SER PHOSPHOSERINE MODRES 3P35 SEP E 4 SER PHOSPHOSERINE HET ACE D 0 3 HET SEP D 4 10 HET NH2 D 7 1 HET ACE E 0 3 HET SEP E 4 10 HET NH2 E 7 1 HET GOL A 595 6 HET GOL A 596 6 HET GOL B 595 6 HET GOL B 596 6 HET GOL B 597 6 HETNAM ACE ACETYL GROUP HETNAM SEP PHOSPHOSERINE HETNAM NH2 AMINO GROUP HETNAM GOL GLYCEROL HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 ACE 2(C2 H4 O) FORMUL 4 SEP 2(C3 H8 N O6 P) FORMUL 4 NH2 2(H2 N) FORMUL 6 GOL 5(C3 H8 O3) FORMUL 11 HOH *486(H2 O) HELIX 1 1 HIS A 373 SER A 387 1 15 HELIX 2 2 ARG A 396 GLU A 401 5 6 HELIX 3 3 ASP A 402 ILE A 406 5 5 HELIX 4 4 PRO A 469 SER A 471 5 3 HELIX 5 5 LEU A 472 LEU A 490 1 19 HELIX 6 6 LEU A 564 GLY A 571 1 8 HELIX 7 7 CYS A 573 SER A 593 1 21 HELIX 8 8 CYS B 372 SER B 387 1 16 HELIX 9 9 ARG B 396 GLU B 401 5 6 HELIX 10 10 ASP B 402 ILE B 406 5 5 HELIX 11 11 PRO B 469 SER B 471 5 3 HELIX 12 12 LEU B 472 LEU B 490 1 19 HELIX 13 13 LEU B 564 GLY B 571 1 8 HELIX 14 14 CYS B 573 SER B 593 1 21 HELIX 15 15 CYS C 372 SER C 387 1 16 HELIX 16 16 ARG C 396 GLU C 401 5 6 HELIX 17 17 ASP C 402 ILE C 406 5 5 HELIX 18 18 PRO C 469 SER C 471 5 3 HELIX 19 19 LEU C 472 LEU C 490 1 19 HELIX 20 20 LEU C 564 GLY C 571 1 8 HELIX 21 21 CYS C 573 SER C 593 1 21 SHEET 1 A 7 GLU A 460 THR A 464 0 SHEET 2 A 7 SER A 450 ILE A 454 -1 N LEU A 451 O LEU A 463 SHEET 3 A 7 ARG A 441 LEU A 444 -1 N ARG A 441 O ILE A 454 SHEET 4 A 7 VAL A 432 LEU A 435 -1 N VAL A 432 O LEU A 444 SHEET 5 A 7 GLY A 422 LEU A 427 -1 N LEU A 423 O LEU A 435 SHEET 6 A 7 VAL A 411 TYR A 417 -1 N LYS A 413 O GLN A 426 SHEET 7 A 7 MET D 1 GLN D 2 -1 O MET D 1 N ASP A 416 SHEET 1 B 6 LEU A 511 ARG A 516 0 SHEET 2 B 6 ALA A 520 LEU A 525 -1 O HIS A 524 N THR A 513 SHEET 3 B 6 VAL A 530 PHE A 534 -1 O GLN A 531 N LEU A 523 SHEET 4 B 6 LYS A 540 CYS A 544 -1 O LEU A 543 N VAL A 530 SHEET 5 B 6 ALA A 549 ILE A 553 -1 O THR A 551 N ILE A 542 SHEET 6 B 6 PHE A 559 ARG A 563 -1 O TYR A 562 N VAL A 550 SHEET 1 C 6 VAL B 411 ASP B 416 0 SHEET 2 C 6 GLY B 422 LEU B 427 -1 O GLY B 424 N VAL B 415 SHEET 3 C 6 VAL B 432 PHE B 436 -1 O LEU B 435 N LEU B 423 SHEET 4 C 6 ARG B 441 LEU B 444 -1 O LEU B 444 N VAL B 432 SHEET 5 C 6 SER B 450 ILE B 454 -1 O ILE B 454 N ARG B 441 SHEET 6 C 6 GLU B 460 THR B 464 -1 O LEU B 463 N LEU B 451 SHEET 1 D 6 LEU B 511 ARG B 516 0 SHEET 2 D 6 ALA B 520 LEU B 525 -1 O ILE B 522 N PHE B 515 SHEET 3 D 6 VAL B 530 PHE B 534 -1 O GLN B 531 N LEU B 523 SHEET 4 D 6 LYS B 540 CYS B 544 -1 O LEU B 543 N VAL B 530 SHEET 5 D 6 ALA B 549 ILE B 553 -1 O ILE B 553 N LYS B 540 SHEET 6 D 6 PHE B 559 ARG B 563 -1 O TYR B 562 N VAL B 550 SHEET 1 E 6 VAL C 411 TYR C 417 0 SHEET 2 E 6 GLY C 422 LEU C 427 -1 O GLY C 424 N VAL C 415 SHEET 3 E 6 VAL C 432 PHE C 436 -1 O GLY C 433 N TYR C 425 SHEET 4 E 6 ARG C 441 LEU C 444 -1 O LEU C 444 N VAL C 432 SHEET 5 E 6 SER C 450 ILE C 454 -1 O ILE C 454 N ARG C 441 SHEET 6 E 6 GLU C 460 THR C 464 -1 O LEU C 463 N LEU C 451 SHEET 1 F 6 LEU C 511 ARG C 516 0 SHEET 2 F 6 ALA C 520 LEU C 525 -1 O ILE C 522 N PHE C 515 SHEET 3 F 6 VAL C 530 PHE C 534 -1 O GLN C 531 N LEU C 523 SHEET 4 F 6 LYS C 540 CYS C 544 -1 O LEU C 541 N ILE C 532 SHEET 5 F 6 ALA C 549 ILE C 553 -1 O THR C 551 N ILE C 542 SHEET 6 F 6 PHE C 559 ARG C 563 -1 O TYR C 562 N VAL C 550 LINK C ACE D 0 N MET D 1 1555 1555 1.34 LINK C SER D 3 N SEP D 4 1555 1555 1.33 LINK C SEP D 4 N PRO D 5 1555 1555 1.35 LINK C LEU D 6 N NH2 D 7 1555 1555 1.33 LINK C ACE E 0 N MET E 1 1555 1555 1.33 LINK C SER E 3 N SEP E 4 1555 1555 1.33 LINK C SEP E 4 N PRO E 5 1555 1555 1.35 LINK C LEU E 6 N NH2 E 7 1555 1555 1.33 SITE 1 AC1 5 ASN A 385 PRO A 389 ALA A 577 ARG A 581 SITE 2 AC1 5 GLU B 504 SITE 1 AC2 7 ARG A 507 LEU A 508 TYR A 510 SER A 526 SITE 2 AC2 7 GLN B 536 ASP B 537 HIS B 538 SITE 1 AC3 6 THR B 459 GLU B 460 HOH B 601 HOH C 10 SITE 2 AC3 6 TRP C 414 LEU C 490 SITE 1 AC4 2 LEU B 566 GLU B 569 SITE 1 AC5 6 TYR B 421 PHE B 436 ASN B 437 ASP B 438 SITE 2 AC5 6 LYS B 475 HOH B 598 CRYST1 58.893 95.828 65.964 90.00 116.34 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016980 0.000000 0.008408 0.00000 SCALE2 0.000000 0.010435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016916 0.00000