HEADER LYASE 04-OCT-10 3P3B TITLE CRYSTAL STRUCTURE OF GALACTURONATE DEHYDRATASE FROM GEOBACILLUS SP. TITLE 2 COMPLEXED WITH D-TARTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE/MUCONATE LACTONIZING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GALACTURONATE DEHYDRATASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS SP. Y412MC10; SOURCE 3 ORGANISM_TAXID: 481743; SOURCE 4 STRAIN: Y412MC10; SOURCE 5 GENE: GYMC10_3367; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENOLASE SUPERFAMILY FOLD, GALACTURONATE DEHYDRATASE, D-TARTRATE, KEYWDS 2 GALACTURONATE, LYASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 4 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,F.GRONINGER-POE,J.A.GERLT,S.K.BURLEY, AUTHOR 2 S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (NYSGXRC) REVDAT 5 21-FEB-24 3P3B 1 REMARK REVDAT 4 10-FEB-21 3P3B 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 2 1 LINK REVDAT 3 14-DEC-11 3P3B 1 JRNL SOURCE TITLE VERSN REVDAT 2 06-JUL-11 3P3B 1 AUTHOR KEYWDS REVDAT 1 29-JUN-11 3P3B 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,F.GRONINGER-POE,J.A.GERLT, JRNL AUTH 2 S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF GALACTURONATE DEHYDRATASE FROM JRNL TITL 2 GEOBACILLUS SP. COMPLEXED WITH D-TARTRATE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 87428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2127 - 5.1257 0.99 3074 148 0.1772 0.1928 REMARK 3 2 5.1257 - 4.0696 1.00 3020 142 0.1599 0.1804 REMARK 3 3 4.0696 - 3.5555 1.00 3020 161 0.1722 0.2103 REMARK 3 4 3.5555 - 3.2305 1.00 2982 144 0.2051 0.2187 REMARK 3 5 3.2305 - 2.9991 1.00 2978 158 0.2295 0.2852 REMARK 3 6 2.9991 - 2.8223 1.00 2979 162 0.2325 0.2813 REMARK 3 7 2.8223 - 2.6810 1.00 2973 157 0.2271 0.2563 REMARK 3 8 2.6810 - 2.5643 1.00 2953 182 0.2220 0.2532 REMARK 3 9 2.5643 - 2.4656 1.00 2962 160 0.2208 0.2964 REMARK 3 10 2.4656 - 2.3805 1.00 2940 166 0.2255 0.2634 REMARK 3 11 2.3805 - 2.3061 1.00 2965 169 0.2195 0.2517 REMARK 3 12 2.3061 - 2.2402 1.00 2993 132 0.2182 0.2872 REMARK 3 13 2.2402 - 2.1812 1.00 2934 160 0.2252 0.2519 REMARK 3 14 2.1812 - 2.1280 1.00 2973 153 0.2319 0.2986 REMARK 3 15 2.1280 - 2.0796 1.00 2961 160 0.2269 0.2942 REMARK 3 16 2.0796 - 2.0354 1.00 2949 154 0.2366 0.2521 REMARK 3 17 2.0354 - 1.9946 1.00 2946 134 0.2345 0.2283 REMARK 3 18 1.9946 - 1.9570 1.00 2960 159 0.2396 0.2845 REMARK 3 19 1.9570 - 1.9221 1.00 2949 163 0.2460 0.2630 REMARK 3 20 1.9221 - 1.8895 1.00 2936 167 0.2649 0.3050 REMARK 3 21 1.8895 - 1.8590 1.00 2979 160 0.2675 0.3151 REMARK 3 22 1.8590 - 1.8304 1.00 2919 158 0.2780 0.2905 REMARK 3 23 1.8304 - 1.8035 0.99 2941 169 0.2956 0.3393 REMARK 3 24 1.8035 - 1.7781 0.98 2928 148 0.3021 0.3344 REMARK 3 25 1.7781 - 1.7540 0.95 2788 141 0.3166 0.3427 REMARK 3 26 1.7540 - 1.7313 0.87 2552 137 0.3256 0.3409 REMARK 3 27 1.7313 - 1.7096 0.75 2215 125 0.3374 0.3998 REMARK 3 28 1.7096 - 1.6890 0.61 1799 96 0.3497 0.3888 REMARK 3 29 1.6890 - 1.6694 0.49 1465 77 0.3585 0.3567 REMARK 3 30 1.6694 - 1.6506 0.34 1011 42 0.3726 0.3565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 35.76 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.05110 REMARK 3 B22 (A**2) : -1.16720 REMARK 3 B33 (A**2) : -1.88390 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.41060 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6030 REMARK 3 ANGLE : 1.063 8171 REMARK 3 CHIRALITY : 0.075 866 REMARK 3 PLANARITY : 0.004 1069 REMARK 3 DIHEDRAL : 16.897 2165 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P3B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87428 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.651 REMARK 200 RESOLUTION RANGE LOW (A) : 41.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG MONOMETHYL ETHER 2000, 0.1M REMARK 280 POTASSIUM THIOCYANATE , PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 79.42950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.02550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 79.42950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.02550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 117 REMARK 465 ALA A 118 REMARK 465 HIS A 119 REMARK 465 LEU A 120 REMARK 465 GLU A 121 REMARK 465 THR A 122 REMARK 465 GLY A 123 REMARK 465 ALA A 124 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 ASN B 4 REMARK 465 ILE B 5 REMARK 465 THR B 6 REMARK 465 GLY B 7 REMARK 465 ILE B 8 REMARK 465 GLN B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 TRP B 12 REMARK 465 GLY B 117 REMARK 465 ALA B 118 REMARK 465 HIS B 119 REMARK 465 LEU B 120 REMARK 465 GLU B 121 REMARK 465 THR B 122 REMARK 465 GLY B 123 REMARK 465 ALA B 124 REMARK 465 GLU B 385 REMARK 465 GLY B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 176 -46.74 -141.91 REMARK 500 ASN A 331 39.57 -98.08 REMARK 500 ARG B 176 -41.13 -142.41 REMARK 500 ASN B 209 49.16 37.77 REMARK 500 GLU B 234 59.12 37.98 REMARK 500 ASN B 331 31.24 -92.28 REMARK 500 GLU B 333 -70.72 -98.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 393 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 207 OD2 REMARK 620 2 GLU A 233 OE2 92.7 REMARK 620 3 GLU A 263 OE2 171.3 88.5 REMARK 620 4 TAR A 395 O11 94.7 88.8 93.9 REMARK 620 5 TAR A 395 O2 94.5 164.3 86.5 76.7 REMARK 620 6 HOH A 606 O 88.8 106.8 82.6 163.8 87.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 394 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 234 OE2 REMARK 620 2 GLU A 238 OE2 173.9 REMARK 620 3 ASP A 261 OD1 95.4 90.8 REMARK 620 4 HOH A 607 O 87.5 86.3 176.6 REMARK 620 5 HOH A 608 O 92.3 87.1 90.4 87.8 REMARK 620 6 HOH A 609 O 90.9 90.2 84.9 96.7 174.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 393 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 207 OD2 REMARK 620 2 GLU B 233 OE2 97.5 REMARK 620 3 GLU B 263 OE2 174.9 87.3 REMARK 620 4 TAR B 395 O11 93.6 85.3 88.6 REMARK 620 5 TAR B 395 O2 89.4 155.4 86.9 70.6 REMARK 620 6 HOH B 478 O 87.9 112.4 88.6 161.9 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 394 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 234 OE2 REMARK 620 2 GLU B 238 OE2 171.5 REMARK 620 3 ASP B 261 OD1 96.8 90.6 REMARK 620 4 HOH B 479 O 98.9 85.5 88.3 REMARK 620 5 HOH B 480 O 88.9 84.2 171.9 85.2 REMARK 620 6 HOH B 481 O 88.8 86.8 90.7 172.3 95.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAR A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAR B 395 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OPS RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH THE SAME LIGAND CRYSTALLIZED IN REMARK 900 DIFFERENT UNIT CELL AND WITH DIFFERENT BINDING DETAILS REMARK 900 RELATED ID: NYSGXRC-9825A RELATED DB: TARGETDB DBREF 3P3B A 1 384 UNP D3EID5 D3EID5_GEOS4 1 382 DBREF 3P3B B 1 384 UNP D3EID5 D3EID5_GEOS4 1 382 SEQADV 3P3B SER A 2 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B LEU A 3 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B GLU A 385 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B GLY A 386 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS A 387 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS A 388 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS A 389 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS A 390 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS A 391 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS A 392 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B SER B 2 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B LEU B 3 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B GLU B 385 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B GLY B 386 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS B 387 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS B 388 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS B 389 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS B 390 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS B 391 UNP D3EID5 EXPRESSION TAG SEQADV 3P3B HIS B 392 UNP D3EID5 EXPRESSION TAG SEQRES 1 A 392 MET SER LEU ASN ILE THR GLY ILE GLN SER ASP TRP LYS SEQRES 2 A 392 VAL GLU LYS ILE GLU PHE ALA LYS LEU THR GLY GLU ARG SEQRES 3 A 392 ALA ARG SER ALA GLY ALA ASN GLY ARG ILE GLY VAL HIS SEQRES 4 A 392 GLY LYS SER CYS THR VAL ASP ILE ALA ARG ILE THR ILE SEQRES 5 A 392 ASP GLY GLN THR GLY TYR GLY SER SER ILE HIS MET THR SEQRES 6 A 392 PRO GLU TRP ALA GLU ASP VAL ILE GLY ARG ARG LEU LEU SEQRES 7 A 392 ASP LEU PHE ASP ASP ARG GLY ARG LEU ARG GLU ALA TYR SEQRES 8 A 392 ARG LEU GLN LEU GLU TYR PRO VAL LEU ASP TRP LEU GLY SEQRES 9 A 392 GLN ARG GLN GLY LYS PRO VAL TYR ASP LEU VAL SER GLY SEQRES 10 A 392 ALA HIS LEU GLU THR GLY ALA SER LEU VAL VAL PRO CYS SEQRES 11 A 392 TYR ASP THR SER LEU TYR PHE ASP ASP LEU HIS LEU ALA SEQRES 12 A 392 ASP GLU ARG ALA ALA VAL ALA LEU MET GLN GLU GLU ALA SEQRES 13 A 392 MET GLN GLY TYR ALA LYS GLY GLN ARG HIS PHE LYS ILE SEQRES 14 A 392 LYS VAL GLY ARG GLY GLY ARG HIS MET PRO LEU TRP GLU SEQRES 15 A 392 GLY THR LYS ARG ASP ILE ALA ILE VAL ARG GLY ILE SER SEQRES 16 A 392 GLU VAL ALA GLY PRO ALA GLY LYS ILE MET ILE ASP ALA SEQRES 17 A 392 ASN ASN ALA TYR ASN LEU ASN LEU THR LYS GLU VAL LEU SEQRES 18 A 392 ALA ALA LEU SER ASP VAL ASN LEU TYR TRP LEU GLU GLU SEQRES 19 A 392 ALA PHE HIS GLU ASP GLU ALA LEU TYR GLU ASP LEU LYS SEQRES 20 A 392 GLU TRP LEU GLY GLN ARG GLY GLN ASN VAL LEU ILE ALA SEQRES 21 A 392 ASP GLY GLU GLY LEU ALA SER PRO HIS LEU ILE GLU TRP SEQRES 22 A 392 ALA THR ARG GLY ARG VAL ASP VAL LEU GLN TYR ASP ILE SEQRES 23 A 392 ILE TRP PRO GLY PHE THR HIS TRP MET GLU LEU GLY GLU SEQRES 24 A 392 LYS LEU ASP ALA HIS GLY LEU ARG SER ALA PRO HIS CYS SEQRES 25 A 392 TYR GLY ASN ALA TYR GLY ILE TYR ALA SER GLY HIS LEU SEQRES 26 A 392 SER ALA ALA VAL ARG ASN PHE GLU PHE VAL GLU TYR ASP SEQRES 27 A 392 ASP ILE THR ILE GLU GLY MET ASP VAL SER GLY TYR ARG SEQRES 28 A 392 ILE GLU ASN GLY GLU ILE HIS VAL PRO ALA THR PRO GLY SEQRES 29 A 392 PHE GLY ILE VAL PHE ASP ASP GLU LEU VAL THR TYR LEU SEQRES 30 A 392 ILE ASN ARG SER GLY TRP SER GLU GLY HIS HIS HIS HIS SEQRES 31 A 392 HIS HIS SEQRES 1 B 392 MET SER LEU ASN ILE THR GLY ILE GLN SER ASP TRP LYS SEQRES 2 B 392 VAL GLU LYS ILE GLU PHE ALA LYS LEU THR GLY GLU ARG SEQRES 3 B 392 ALA ARG SER ALA GLY ALA ASN GLY ARG ILE GLY VAL HIS SEQRES 4 B 392 GLY LYS SER CYS THR VAL ASP ILE ALA ARG ILE THR ILE SEQRES 5 B 392 ASP GLY GLN THR GLY TYR GLY SER SER ILE HIS MET THR SEQRES 6 B 392 PRO GLU TRP ALA GLU ASP VAL ILE GLY ARG ARG LEU LEU SEQRES 7 B 392 ASP LEU PHE ASP ASP ARG GLY ARG LEU ARG GLU ALA TYR SEQRES 8 B 392 ARG LEU GLN LEU GLU TYR PRO VAL LEU ASP TRP LEU GLY SEQRES 9 B 392 GLN ARG GLN GLY LYS PRO VAL TYR ASP LEU VAL SER GLY SEQRES 10 B 392 ALA HIS LEU GLU THR GLY ALA SER LEU VAL VAL PRO CYS SEQRES 11 B 392 TYR ASP THR SER LEU TYR PHE ASP ASP LEU HIS LEU ALA SEQRES 12 B 392 ASP GLU ARG ALA ALA VAL ALA LEU MET GLN GLU GLU ALA SEQRES 13 B 392 MET GLN GLY TYR ALA LYS GLY GLN ARG HIS PHE LYS ILE SEQRES 14 B 392 LYS VAL GLY ARG GLY GLY ARG HIS MET PRO LEU TRP GLU SEQRES 15 B 392 GLY THR LYS ARG ASP ILE ALA ILE VAL ARG GLY ILE SER SEQRES 16 B 392 GLU VAL ALA GLY PRO ALA GLY LYS ILE MET ILE ASP ALA SEQRES 17 B 392 ASN ASN ALA TYR ASN LEU ASN LEU THR LYS GLU VAL LEU SEQRES 18 B 392 ALA ALA LEU SER ASP VAL ASN LEU TYR TRP LEU GLU GLU SEQRES 19 B 392 ALA PHE HIS GLU ASP GLU ALA LEU TYR GLU ASP LEU LYS SEQRES 20 B 392 GLU TRP LEU GLY GLN ARG GLY GLN ASN VAL LEU ILE ALA SEQRES 21 B 392 ASP GLY GLU GLY LEU ALA SER PRO HIS LEU ILE GLU TRP SEQRES 22 B 392 ALA THR ARG GLY ARG VAL ASP VAL LEU GLN TYR ASP ILE SEQRES 23 B 392 ILE TRP PRO GLY PHE THR HIS TRP MET GLU LEU GLY GLU SEQRES 24 B 392 LYS LEU ASP ALA HIS GLY LEU ARG SER ALA PRO HIS CYS SEQRES 25 B 392 TYR GLY ASN ALA TYR GLY ILE TYR ALA SER GLY HIS LEU SEQRES 26 B 392 SER ALA ALA VAL ARG ASN PHE GLU PHE VAL GLU TYR ASP SEQRES 27 B 392 ASP ILE THR ILE GLU GLY MET ASP VAL SER GLY TYR ARG SEQRES 28 B 392 ILE GLU ASN GLY GLU ILE HIS VAL PRO ALA THR PRO GLY SEQRES 29 B 392 PHE GLY ILE VAL PHE ASP ASP GLU LEU VAL THR TYR LEU SEQRES 30 B 392 ILE ASN ARG SER GLY TRP SER GLU GLY HIS HIS HIS HIS SEQRES 31 B 392 HIS HIS HET MG A 393 1 HET MG A 394 1 HET TAR A 395 10 HET MG B 393 1 HET MG B 394 1 HET TAR B 395 10 HETNAM MG MAGNESIUM ION HETNAM TAR D(-)-TARTARIC ACID FORMUL 3 MG 4(MG 2+) FORMUL 5 TAR 2(C4 H6 O6) FORMUL 9 HOH *316(H2 O) HELIX 1 1 THR A 65 ASP A 71 1 7 HELIX 2 2 ARG A 76 PHE A 81 5 6 HELIX 3 3 ARG A 88 ALA A 90 5 3 HELIX 4 4 TYR A 91 GLY A 108 1 18 HELIX 5 5 PRO A 110 SER A 116 1 7 HELIX 6 6 ASP A 144 LYS A 162 1 19 HELIX 7 7 GLY A 172 ARG A 176 5 5 HELIX 8 8 PRO A 179 GLY A 199 1 21 HELIX 9 9 ASN A 213 LEU A 224 1 12 HELIX 10 10 ASP A 239 GLY A 254 1 16 HELIX 11 11 HIS A 269 ARG A 276 1 8 HELIX 12 12 GLY A 290 HIS A 304 1 15 HELIX 13 13 ALA A 316 SER A 326 1 11 HELIX 14 14 ALA A 327 VAL A 329 5 3 HELIX 15 15 ASP A 370 SER A 381 1 12 HELIX 16 16 THR B 65 ASP B 71 1 7 HELIX 17 17 ARG B 76 PHE B 81 1 6 HELIX 18 18 ARG B 88 ALA B 90 5 3 HELIX 19 19 TYR B 91 GLY B 108 1 18 HELIX 20 20 PRO B 110 VAL B 115 1 6 HELIX 21 21 ASP B 144 ALA B 161 1 18 HELIX 22 22 GLY B 172 HIS B 177 1 6 HELIX 23 23 PRO B 179 GLY B 199 1 21 HELIX 24 24 ASN B 213 LEU B 224 1 12 HELIX 25 25 ASP B 239 GLY B 254 1 16 HELIX 26 26 HIS B 269 ARG B 276 1 8 HELIX 27 27 GLY B 290 HIS B 304 1 15 HELIX 28 28 ALA B 316 SER B 326 1 11 HELIX 29 29 ALA B 327 VAL B 329 5 3 HELIX 30 30 ASP B 370 GLY B 382 1 13 SHEET 1 A 4 GLN A 55 SER A 60 0 SHEET 2 A 4 GLY A 40 ILE A 52 -1 N ALA A 48 O GLY A 59 SHEET 3 A 4 VAL A 14 ALA A 30 -1 N ALA A 20 O ILE A 47 SHEET 4 A 4 ILE A 340 ILE A 342 -1 O THR A 341 N GLU A 25 SHEET 1 B 4 GLN A 55 SER A 60 0 SHEET 2 B 4 GLY A 40 ILE A 52 -1 N ALA A 48 O GLY A 59 SHEET 3 B 4 VAL A 14 ALA A 30 -1 N ALA A 20 O ILE A 47 SHEET 4 B 4 TRP A 383 GLY A 386 -1 O GLU A 385 N ILE A 17 SHEET 1 C 8 ARG A 307 SER A 308 0 SHEET 2 C 8 VAL A 281 LEU A 282 1 N LEU A 282 O ARG A 307 SHEET 3 C 8 LEU A 258 ASP A 261 1 N ILE A 259 O VAL A 281 SHEET 4 C 8 LEU A 229 GLU A 233 1 N LEU A 232 O LEU A 258 SHEET 5 C 8 ILE A 204 ASP A 207 1 N ILE A 206 O GLU A 233 SHEET 6 C 8 PHE A 167 LYS A 170 1 N ILE A 169 O MET A 205 SHEET 7 C 8 LEU A 126 LEU A 135 1 N LEU A 135 O LYS A 170 SHEET 8 C 8 VAL A 335 TYR A 337 1 O TYR A 337 N TYR A 131 SHEET 1 D 9 ARG A 307 SER A 308 0 SHEET 2 D 9 VAL A 281 LEU A 282 1 N LEU A 282 O ARG A 307 SHEET 3 D 9 LEU A 258 ASP A 261 1 N ILE A 259 O VAL A 281 SHEET 4 D 9 LEU A 229 GLU A 233 1 N LEU A 232 O LEU A 258 SHEET 5 D 9 ILE A 204 ASP A 207 1 N ILE A 206 O GLU A 233 SHEET 6 D 9 PHE A 167 LYS A 170 1 N ILE A 169 O MET A 205 SHEET 7 D 9 LEU A 126 LEU A 135 1 N LEU A 135 O LYS A 170 SHEET 8 D 9 GLU A 356 VAL A 359 -1 O ILE A 357 N VAL A 128 SHEET 9 D 9 ARG A 351 GLU A 353 -1 N ARG A 351 O HIS A 358 SHEET 1 E 2 MET A 345 ASP A 346 0 SHEET 2 E 2 VAL A 368 PHE A 369 -1 O VAL A 368 N ASP A 346 SHEET 1 F 4 GLN B 55 SER B 60 0 SHEET 2 F 4 GLY B 40 ILE B 52 -1 N ALA B 48 O GLY B 59 SHEET 3 F 4 VAL B 14 ALA B 30 -1 N GLU B 15 O THR B 51 SHEET 4 F 4 ILE B 340 ILE B 342 -1 O THR B 341 N GLU B 25 SHEET 1 G 8 ARG B 307 SER B 308 0 SHEET 2 G 8 VAL B 281 LEU B 282 1 N LEU B 282 O ARG B 307 SHEET 3 G 8 LEU B 258 ASP B 261 1 N ASP B 261 O VAL B 281 SHEET 4 G 8 LEU B 229 GLU B 233 1 N LEU B 232 O ALA B 260 SHEET 5 G 8 ILE B 204 ASP B 207 1 N ILE B 206 O GLU B 233 SHEET 6 G 8 PHE B 167 LYS B 170 1 N ILE B 169 O MET B 205 SHEET 7 G 8 LEU B 126 LEU B 135 1 N ASP B 132 O LYS B 168 SHEET 8 G 8 VAL B 335 TYR B 337 1 O TYR B 337 N THR B 133 SHEET 1 H 9 ARG B 307 SER B 308 0 SHEET 2 H 9 VAL B 281 LEU B 282 1 N LEU B 282 O ARG B 307 SHEET 3 H 9 LEU B 258 ASP B 261 1 N ASP B 261 O VAL B 281 SHEET 4 H 9 LEU B 229 GLU B 233 1 N LEU B 232 O ALA B 260 SHEET 5 H 9 ILE B 204 ASP B 207 1 N ILE B 206 O GLU B 233 SHEET 6 H 9 PHE B 167 LYS B 170 1 N ILE B 169 O MET B 205 SHEET 7 H 9 LEU B 126 LEU B 135 1 N ASP B 132 O LYS B 168 SHEET 8 H 9 GLU B 356 VAL B 359 -1 O ILE B 357 N VAL B 128 SHEET 9 H 9 ARG B 351 GLU B 353 -1 N ARG B 351 O HIS B 358 SHEET 1 I 2 MET B 345 ASP B 346 0 SHEET 2 I 2 VAL B 368 PHE B 369 -1 O VAL B 368 N ASP B 346 LINK OD2 ASP A 207 MG MG A 393 1555 1555 2.15 LINK OE2 GLU A 233 MG MG A 393 1555 1555 2.06 LINK OE2 GLU A 234 MG MG A 394 1555 1555 2.14 LINK OE2 GLU A 238 MG MG A 394 1555 1555 2.16 LINK OD1 ASP A 261 MG MG A 394 1555 1555 2.11 LINK OE2 GLU A 263 MG MG A 393 1555 1555 2.19 LINK MG MG A 393 O11 TAR A 395 1555 1555 2.13 LINK MG MG A 393 O2 TAR A 395 1555 1555 2.37 LINK MG MG A 393 O HOH A 606 1555 1555 2.17 LINK MG MG A 394 O HOH A 607 1555 1555 2.22 LINK MG MG A 394 O HOH A 608 1555 1555 2.11 LINK MG MG A 394 O HOH A 609 1555 1555 2.17 LINK OD2 ASP B 207 MG MG B 393 1555 1555 2.20 LINK OE2 GLU B 233 MG MG B 393 1555 1555 2.18 LINK OE2 GLU B 234 MG MG B 394 1555 1555 2.15 LINK OE2 GLU B 238 MG MG B 394 1555 1555 2.14 LINK OD1 ASP B 261 MG MG B 394 1555 1555 2.12 LINK OE2 GLU B 263 MG MG B 393 1555 1555 2.13 LINK MG MG B 393 O11 TAR B 395 1555 1555 2.25 LINK MG MG B 393 O2 TAR B 395 1555 1555 2.35 LINK MG MG B 393 O HOH B 478 1555 1555 2.08 LINK MG MG B 394 O HOH B 479 1555 1555 2.22 LINK MG MG B 394 O HOH B 480 1555 1555 2.25 LINK MG MG B 394 O HOH B 481 1555 1555 2.21 CISPEP 1 TRP A 288 PRO A 289 0 13.59 CISPEP 2 TRP B 288 PRO B 289 0 15.05 SITE 1 AC1 5 ASP A 207 GLU A 233 GLU A 263 TAR A 395 SITE 2 AC1 5 HOH A 606 SITE 1 AC2 6 GLU A 234 GLU A 238 ASP A 261 HOH A 607 SITE 2 AC2 6 HOH A 608 HOH A 609 SITE 1 AC3 15 ASN A 33 TYR A 136 LYS A 168 LYS A 170 SITE 2 AC3 15 ASP A 207 ASN A 209 GLU A 233 GLU A 263 SITE 3 AC3 15 HIS A 311 TYR A 313 GLU A 336 MG A 393 SITE 4 AC3 15 HOH A 435 HOH A 521 HOH A 557 SITE 1 AC4 5 ASP B 207 GLU B 233 GLU B 263 TAR B 395 SITE 2 AC4 5 HOH B 478 SITE 1 AC5 6 GLU B 234 GLU B 238 ASP B 261 HOH B 479 SITE 2 AC5 6 HOH B 480 HOH B 481 SITE 1 AC6 13 ASN B 33 TYR B 136 LYS B 168 LYS B 170 SITE 2 AC6 13 ASP B 207 ASN B 209 GLU B 233 GLU B 263 SITE 3 AC6 13 HIS B 311 TYR B 313 GLU B 336 MG B 393 SITE 4 AC6 13 HOH B 425 CRYST1 158.859 66.051 75.664 90.00 95.48 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006295 0.000000 0.000604 0.00000 SCALE2 0.000000 0.015140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013277 0.00000