data_3P3D # _entry.id 3P3D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3P3D RCSB RCSB061904 WWPDB D_1000061904 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-15053d _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3P3D _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-10-04 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sampathkumar, P.' 1 ? 'Shawn, C.' 2 ? 'Bain, K.' 3 ? 'Gilmore, J.' 4 ? 'Gheyi, T.' 5 ? 'Atwell, S.' 6 ? 'Thompson, D.A.' 7 ? 'Emtage, J.S.' 8 ? 'Wasserman, S.' 9 ? 'Sauder, J.M.' 10 0000-0002-0254-4955 'Burley, S.K.' 11 0000-0002-2487-9713 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 12 ? # _citation.id primary _citation.title 'Crystal structure of the Nup53 RRM domain from Pichia guilliermondii' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Sampathkumar, P.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.length_a 62.507 _cell.length_b 62.507 _cell.length_c 55.117 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3P3D _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.entry_id 3P3D _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 150 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoporin 53' 14517.317 1 ? ? 'RRM Domain residues 261-383' ? 2 water nat water 18.015 20 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSLSNGELAILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL ENGAVFNGVLLGVIPYTKDAVERLQKRKLTSSEDIGSGITTAAAEGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLSNGELAILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL ENGAVFNGVLLGVIPYTKDAVERLQKRKLTSSEDIGSGITTAAAEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-15053d # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 LEU n 1 4 SER n 1 5 ASN n 1 6 GLY n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 ILE n 1 11 LEU n 1 12 VAL n 1 13 PHE n 1 14 GLY n 1 15 TYR n 1 16 PRO n 1 17 GLU n 1 18 THR n 1 19 MET n 1 20 ALA n 1 21 ASN n 1 22 GLN n 1 23 VAL n 1 24 ILE n 1 25 ALA n 1 26 TYR n 1 27 PHE n 1 28 GLN n 1 29 GLU n 1 30 PHE n 1 31 GLY n 1 32 THR n 1 33 ILE n 1 34 LEU n 1 35 GLU n 1 36 ASP n 1 37 PHE n 1 38 GLU n 1 39 VAL n 1 40 LEU n 1 41 ARG n 1 42 LYS n 1 43 PRO n 1 44 GLN n 1 45 ALA n 1 46 MET n 1 47 THR n 1 48 VAL n 1 49 GLY n 1 50 LEU n 1 51 GLN n 1 52 ASP n 1 53 ARG n 1 54 GLN n 1 55 PHE n 1 56 VAL n 1 57 PRO n 1 58 ILE n 1 59 PHE n 1 60 SER n 1 61 GLY n 1 62 ASN n 1 63 SER n 1 64 TRP n 1 65 THR n 1 66 LYS n 1 67 ILE n 1 68 THR n 1 69 TYR n 1 70 ASP n 1 71 ASN n 1 72 PRO n 1 73 ALA n 1 74 SER n 1 75 ALA n 1 76 VAL n 1 77 ASP n 1 78 ALA n 1 79 LEU n 1 80 LEU n 1 81 GLU n 1 82 ASN n 1 83 GLY n 1 84 ALA n 1 85 VAL n 1 86 PHE n 1 87 ASN n 1 88 GLY n 1 89 VAL n 1 90 LEU n 1 91 LEU n 1 92 GLY n 1 93 VAL n 1 94 ILE n 1 95 PRO n 1 96 TYR n 1 97 THR n 1 98 LYS n 1 99 ASP n 1 100 ALA n 1 101 VAL n 1 102 GLU n 1 103 ARG n 1 104 LEU n 1 105 GLN n 1 106 LYS n 1 107 ARG n 1 108 LYS n 1 109 LEU n 1 110 THR n 1 111 SER n 1 112 SER n 1 113 GLU n 1 114 ASP n 1 115 ILE n 1 116 GLY n 1 117 SER n 1 118 GLY n 1 119 ILE n 1 120 THR n 1 121 THR n 1 122 ALA n 1 123 ALA n 1 124 ALA n 1 125 GLU n 1 126 GLY n 1 127 HIS n 1 128 HIS n 1 129 HIS n 1 130 HIS n 1 131 HIS n 1 132 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name yeast _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NUP53 (gi146415668), PGUG_04532' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pichia guilliermondii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4929 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 6260 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-Codon+RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector pET _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BC-pSGX3(BC); modified pET26b' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A5DMN1_PICGU _struct_ref.pdbx_db_accession A5DMN1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LSNGESAILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDKQFVPIFSGNSWTKITYDNPASAVDALLEN GAVFNGVLLGVIPYTKDAVERLQKRKLTSSEDIGSGITTAAAE ; _struct_ref.pdbx_align_begin 261 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3P3D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 125 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A5DMN1 _struct_ref_seq.db_align_beg 261 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 383 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 261 _struct_ref_seq.pdbx_auth_seq_align_end 383 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3P3D MET A 1 ? UNP A5DMN1 ? ? 'expression tag' 259 1 1 3P3D SER A 2 ? UNP A5DMN1 ? ? 'expression tag' 260 2 1 3P3D LEU A 8 ? UNP A5DMN1 SER 266 conflict 266 3 1 3P3D ARG A 53 ? UNP A5DMN1 LYS 311 conflict 311 4 1 3P3D GLY A 126 ? UNP A5DMN1 ? ? 'expression tag' 384 5 1 3P3D HIS A 127 ? UNP A5DMN1 ? ? 'expression tag' 385 6 1 3P3D HIS A 128 ? UNP A5DMN1 ? ? 'expression tag' 386 7 1 3P3D HIS A 129 ? UNP A5DMN1 ? ? 'expression tag' 387 8 1 3P3D HIS A 130 ? UNP A5DMN1 ? ? 'expression tag' 388 9 1 3P3D HIS A 131 ? UNP A5DMN1 ? ? 'expression tag' 389 10 1 3P3D HIS A 132 ? UNP A5DMN1 ? ? 'expression tag' 390 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3P3D _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.4 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.pdbx_details '100mM sodium acetate, 20% PEG 1500, pH 5.4, VAPOR DIFFUSION, SITTING DROP, temperature 294K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.pdbx_collection_date 2010-06-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator diamond _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97929 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.pdbx_wavelength_list 0.97929 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 31-ID # _reflns.entry_id 3P3D _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.35 _reflns.d_resolution_low 38.62 _reflns.number_all ? _reflns.number_obs 5437 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.085 _reflns.pdbx_netI_over_sigmaI 21.1 _reflns.B_iso_Wilson_estimate 59.0 _reflns.pdbx_redundancy 21.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.48 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 6.5 _reflns_shell.pdbx_Rsym_value 0.406 _reflns_shell.pdbx_redundancy 21.9 _reflns_shell.number_unique_all 782 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3P3D _refine.ls_d_res_high 2.3500 _refine.ls_d_res_low 20.4600 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7600 _refine.ls_number_reflns_obs 5403 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2447 _refine.ls_R_factor_R_work 0.2379 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2876 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 13.7000 _refine.ls_number_reflns_R_free 742 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 45.3917 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.1800 _refine.aniso_B[2][2] -0.1800 _refine.aniso_B[3][3] 0.2700 _refine.aniso_B[1][2] -0.0900 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9350 _refine.correlation_coeff_Fo_to_Fc_free 0.9100 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.2730 _refine.overall_SU_ML 0.2020 _refine.overall_SU_B 8.5770 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'Poly-Ala of 1WWH' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 75.060 _refine.B_iso_min 29.770 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.353 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 668 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 688 _refine_hist.d_res_high 2.3500 _refine_hist.d_res_low 20.4600 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 684 0.013 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 434 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 935 1.420 1.958 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1061 0.874 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 85 7.111 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29 34.909 24.483 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 97 14.846 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 2 20.663 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 110 0.074 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 761 0.011 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 144 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 432 0.711 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 174 0.126 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 695 1.382 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 252 1.849 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 240 3.141 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.3530 _refine_ls_shell.d_res_low 2.4130 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 339 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3670 _refine_ls_shell.R_factor_R_free 0.4790 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 384 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3P3D _struct.title 'Crystal structure of the Nup53 RRM domain from Pichia guilliermondii' _struct.pdbx_descriptor 'Nucleoporin 53' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3P3D _struct_keywords.text ;STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, Protein Transport, component of Nuclear Pore Complex, New York SGX Research Center for Structural Genomics, NUCLEAR PROTEIN ; _struct_keywords.pdbx_keywords 'NUCLEAR PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 16 ? THR A 18 ? PRO A 274 THR A 276 5 ? 3 HELX_P HELX_P2 2 MET A 19 ? GLN A 28 ? MET A 277 GLN A 286 1 ? 10 HELX_P HELX_P3 3 GLU A 29 ? GLY A 31 ? GLU A 287 GLY A 289 5 ? 3 HELX_P HELX_P4 4 PHE A 37 ? ARG A 41 ? PHE A 295 ARG A 299 5 ? 5 HELX_P HELX_P5 5 ASN A 71 ? LEU A 80 ? ASN A 329 LEU A 338 1 ? 10 HELX_P HELX_P6 6 THR A 97 ? GLN A 105 ? THR A 355 GLN A 363 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 60 ? GLY A 61 ? SER A 318 GLY A 319 A 2 TRP A 64 ? THR A 68 ? TRP A 322 THR A 326 A 3 ALA A 9 ? PHE A 13 ? ALA A 267 PHE A 271 A 4 GLY A 92 ? PRO A 95 ? GLY A 350 PRO A 353 B 1 VAL A 85 ? PHE A 86 ? VAL A 343 PHE A 344 B 2 VAL A 89 ? LEU A 90 ? VAL A 347 LEU A 348 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 61 ? N GLY A 319 O TRP A 64 ? O TRP A 322 A 2 3 O THR A 65 ? O THR A 323 N VAL A 12 ? N VAL A 270 A 3 4 N LEU A 11 ? N LEU A 269 O ILE A 94 ? O ILE A 352 B 1 2 N PHE A 86 ? N PHE A 344 O VAL A 89 ? O VAL A 347 # _atom_sites.entry_id 3P3D _atom_sites.fract_transf_matrix[1][1] 0.015998 _atom_sites.fract_transf_matrix[1][2] 0.009237 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018473 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018143 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 259 ? ? ? A . n A 1 2 SER 2 260 ? ? ? A . n A 1 3 LEU 3 261 ? ? ? A . n A 1 4 SER 4 262 ? ? ? A . n A 1 5 ASN 5 263 ? ? ? A . n A 1 6 GLY 6 264 ? ? ? A . n A 1 7 GLU 7 265 ? ? ? A . n A 1 8 LEU 8 266 266 LEU LEU A . n A 1 9 ALA 9 267 267 ALA ALA A . n A 1 10 ILE 10 268 268 ILE ILE A . n A 1 11 LEU 11 269 269 LEU LEU A . n A 1 12 VAL 12 270 270 VAL VAL A . n A 1 13 PHE 13 271 271 PHE PHE A . n A 1 14 GLY 14 272 272 GLY GLY A . n A 1 15 TYR 15 273 273 TYR TYR A . n A 1 16 PRO 16 274 274 PRO PRO A . n A 1 17 GLU 17 275 275 GLU GLU A . n A 1 18 THR 18 276 276 THR THR A . n A 1 19 MET 19 277 277 MET MET A . n A 1 20 ALA 20 278 278 ALA ALA A . n A 1 21 ASN 21 279 279 ASN ASN A . n A 1 22 GLN 22 280 280 GLN GLN A . n A 1 23 VAL 23 281 281 VAL VAL A . n A 1 24 ILE 24 282 282 ILE ILE A . n A 1 25 ALA 25 283 283 ALA ALA A . n A 1 26 TYR 26 284 284 TYR TYR A . n A 1 27 PHE 27 285 285 PHE PHE A . n A 1 28 GLN 28 286 286 GLN GLN A . n A 1 29 GLU 29 287 287 GLU GLU A . n A 1 30 PHE 30 288 288 PHE PHE A . n A 1 31 GLY 31 289 289 GLY GLY A . n A 1 32 THR 32 290 290 THR THR A . n A 1 33 ILE 33 291 291 ILE ILE A . n A 1 34 LEU 34 292 292 LEU LEU A . n A 1 35 GLU 35 293 293 GLU GLU A . n A 1 36 ASP 36 294 294 ASP ASP A . n A 1 37 PHE 37 295 295 PHE PHE A . n A 1 38 GLU 38 296 296 GLU GLU A . n A 1 39 VAL 39 297 297 VAL VAL A . n A 1 40 LEU 40 298 298 LEU LEU A . n A 1 41 ARG 41 299 299 ARG ARG A . n A 1 42 LYS 42 300 300 LYS LYS A . n A 1 43 PRO 43 301 301 PRO PRO A . n A 1 44 GLN 44 302 ? ? ? A . n A 1 45 ALA 45 303 ? ? ? A . n A 1 46 MET 46 304 ? ? ? A . n A 1 47 THR 47 305 ? ? ? A . n A 1 48 VAL 48 306 ? ? ? A . n A 1 49 GLY 49 307 ? ? ? A . n A 1 50 LEU 50 308 ? ? ? A . n A 1 51 GLN 51 309 ? ? ? A . n A 1 52 ASP 52 310 ? ? ? A . n A 1 53 ARG 53 311 ? ? ? A . n A 1 54 GLN 54 312 ? ? ? A . n A 1 55 PHE 55 313 313 PHE PHE A . n A 1 56 VAL 56 314 314 VAL VAL A . n A 1 57 PRO 57 315 315 PRO PRO A . n A 1 58 ILE 58 316 316 ILE ILE A . n A 1 59 PHE 59 317 317 PHE PHE A . n A 1 60 SER 60 318 318 SER SER A . n A 1 61 GLY 61 319 319 GLY GLY A . n A 1 62 ASN 62 320 320 ASN ASN A . n A 1 63 SER 63 321 321 SER SER A . n A 1 64 TRP 64 322 322 TRP TRP A . n A 1 65 THR 65 323 323 THR THR A . n A 1 66 LYS 66 324 324 LYS LYS A . n A 1 67 ILE 67 325 325 ILE ILE A . n A 1 68 THR 68 326 326 THR THR A . n A 1 69 TYR 69 327 327 TYR TYR A . n A 1 70 ASP 70 328 328 ASP ASP A . n A 1 71 ASN 71 329 329 ASN ASN A . n A 1 72 PRO 72 330 330 PRO PRO A . n A 1 73 ALA 73 331 331 ALA ALA A . n A 1 74 SER 74 332 332 SER SER A . n A 1 75 ALA 75 333 333 ALA ALA A . n A 1 76 VAL 76 334 334 VAL VAL A . n A 1 77 ASP 77 335 335 ASP ASP A . n A 1 78 ALA 78 336 336 ALA ALA A . n A 1 79 LEU 79 337 337 LEU LEU A . n A 1 80 LEU 80 338 338 LEU LEU A . n A 1 81 GLU 81 339 339 GLU GLU A . n A 1 82 ASN 82 340 340 ASN ASN A . n A 1 83 GLY 83 341 341 GLY GLY A . n A 1 84 ALA 84 342 342 ALA ALA A . n A 1 85 VAL 85 343 343 VAL VAL A . n A 1 86 PHE 86 344 344 PHE PHE A . n A 1 87 ASN 87 345 345 ASN ASN A . n A 1 88 GLY 88 346 346 GLY GLY A . n A 1 89 VAL 89 347 347 VAL VAL A . n A 1 90 LEU 90 348 348 LEU LEU A . n A 1 91 LEU 91 349 349 LEU LEU A . n A 1 92 GLY 92 350 350 GLY GLY A . n A 1 93 VAL 93 351 351 VAL VAL A . n A 1 94 ILE 94 352 352 ILE ILE A . n A 1 95 PRO 95 353 353 PRO PRO A . n A 1 96 TYR 96 354 354 TYR TYR A . n A 1 97 THR 97 355 355 THR THR A . n A 1 98 LYS 98 356 356 LYS LYS A . n A 1 99 ASP 99 357 357 ASP ASP A . n A 1 100 ALA 100 358 358 ALA ALA A . n A 1 101 VAL 101 359 359 VAL VAL A . n A 1 102 GLU 102 360 360 GLU GLU A . n A 1 103 ARG 103 361 361 ARG ARG A . n A 1 104 LEU 104 362 362 LEU LEU A . n A 1 105 GLN 105 363 363 GLN GLN A . n A 1 106 LYS 106 364 ? ? ? A . n A 1 107 ARG 107 365 ? ? ? A . n A 1 108 LYS 108 366 ? ? ? A . n A 1 109 LEU 109 367 ? ? ? A . n A 1 110 THR 110 368 ? ? ? A . n A 1 111 SER 111 369 ? ? ? A . n A 1 112 SER 112 370 ? ? ? A . n A 1 113 GLU 113 371 ? ? ? A . n A 1 114 ASP 114 372 ? ? ? A . n A 1 115 ILE 115 373 ? ? ? A . n A 1 116 GLY 116 374 ? ? ? A . n A 1 117 SER 117 375 ? ? ? A . n A 1 118 GLY 118 376 ? ? ? A . n A 1 119 ILE 119 377 ? ? ? A . n A 1 120 THR 120 378 ? ? ? A . n A 1 121 THR 121 379 ? ? ? A . n A 1 122 ALA 122 380 ? ? ? A . n A 1 123 ALA 123 381 ? ? ? A . n A 1 124 ALA 124 382 ? ? ? A . n A 1 125 GLU 125 383 ? ? ? A . n A 1 126 GLY 126 384 ? ? ? A . n A 1 127 HIS 127 385 ? ? ? A . n A 1 128 HIS 128 386 ? ? ? A . n A 1 129 HIS 129 387 ? ? ? A . n A 1 130 HIS 130 388 ? ? ? A . n A 1 131 HIS 131 389 ? ? ? A . n A 1 132 HIS 132 390 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 2 2 HOH HOH A . B 2 HOH 3 3 3 HOH HOH A . B 2 HOH 4 4 4 HOH HOH A . B 2 HOH 5 5 5 HOH HOH A . B 2 HOH 6 6 6 HOH HOH A . B 2 HOH 7 7 7 HOH HOH A . B 2 HOH 8 8 8 HOH HOH A . B 2 HOH 9 9 9 HOH HOH A . B 2 HOH 10 10 10 HOH HOH A . B 2 HOH 11 11 11 HOH HOH A . B 2 HOH 12 12 12 HOH HOH A . B 2 HOH 13 13 13 HOH HOH A . B 2 HOH 14 14 14 HOH HOH A . B 2 HOH 15 15 15 HOH HOH A . B 2 HOH 16 16 16 HOH HOH A . B 2 HOH 17 17 17 HOH HOH A . B 2 HOH 18 18 18 HOH HOH A . B 2 HOH 19 19 19 HOH HOH A . B 2 HOH 20 20 20 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 1240 ? 2 MORE -14 ? 2 'SSA (A^2)' 8950 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-01-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-11-21 4 'Structure model' 1 3 2021-02-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Structure summary' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 4 'Structure model' audit_author 3 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.identifier_ORCID' 2 4 'Structure model' '_audit_author.identifier_ORCID' 3 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 SCALA . ? ? ? ? 'data scaling' ? ? ? 5 PHASER . ? ? ? ? phasing ? ? ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 275 ? CG ? A GLU 17 CG 2 1 Y 1 A GLU 275 ? CD ? A GLU 17 CD 3 1 Y 1 A GLU 275 ? OE1 ? A GLU 17 OE1 4 1 Y 1 A GLU 275 ? OE2 ? A GLU 17 OE2 5 1 Y 1 A GLU 296 ? CG ? A GLU 38 CG 6 1 Y 1 A GLU 296 ? CD ? A GLU 38 CD 7 1 Y 1 A GLU 296 ? OE1 ? A GLU 38 OE1 8 1 Y 1 A GLU 296 ? OE2 ? A GLU 38 OE2 9 1 Y 1 A LYS 356 ? CG ? A LYS 98 CG 10 1 Y 1 A LYS 356 ? CD ? A LYS 98 CD 11 1 Y 1 A LYS 356 ? CE ? A LYS 98 CE 12 1 Y 1 A LYS 356 ? NZ ? A LYS 98 NZ 13 1 Y 1 A GLU 360 ? CG ? A GLU 102 CG 14 1 Y 1 A GLU 360 ? CD ? A GLU 102 CD 15 1 Y 1 A GLU 360 ? OE1 ? A GLU 102 OE1 16 1 Y 1 A GLU 360 ? OE2 ? A GLU 102 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 259 ? A MET 1 2 1 Y 1 A SER 260 ? A SER 2 3 1 Y 1 A LEU 261 ? A LEU 3 4 1 Y 1 A SER 262 ? A SER 4 5 1 Y 1 A ASN 263 ? A ASN 5 6 1 Y 1 A GLY 264 ? A GLY 6 7 1 Y 1 A GLU 265 ? A GLU 7 8 1 Y 1 A GLN 302 ? A GLN 44 9 1 Y 1 A ALA 303 ? A ALA 45 10 1 Y 1 A MET 304 ? A MET 46 11 1 Y 1 A THR 305 ? A THR 47 12 1 Y 1 A VAL 306 ? A VAL 48 13 1 Y 1 A GLY 307 ? A GLY 49 14 1 Y 1 A LEU 308 ? A LEU 50 15 1 Y 1 A GLN 309 ? A GLN 51 16 1 Y 1 A ASP 310 ? A ASP 52 17 1 Y 1 A ARG 311 ? A ARG 53 18 1 Y 1 A GLN 312 ? A GLN 54 19 1 Y 1 A LYS 364 ? A LYS 106 20 1 Y 1 A ARG 365 ? A ARG 107 21 1 Y 1 A LYS 366 ? A LYS 108 22 1 Y 1 A LEU 367 ? A LEU 109 23 1 Y 1 A THR 368 ? A THR 110 24 1 Y 1 A SER 369 ? A SER 111 25 1 Y 1 A SER 370 ? A SER 112 26 1 Y 1 A GLU 371 ? A GLU 113 27 1 Y 1 A ASP 372 ? A ASP 114 28 1 Y 1 A ILE 373 ? A ILE 115 29 1 Y 1 A GLY 374 ? A GLY 116 30 1 Y 1 A SER 375 ? A SER 117 31 1 Y 1 A GLY 376 ? A GLY 118 32 1 Y 1 A ILE 377 ? A ILE 119 33 1 Y 1 A THR 378 ? A THR 120 34 1 Y 1 A THR 379 ? A THR 121 35 1 Y 1 A ALA 380 ? A ALA 122 36 1 Y 1 A ALA 381 ? A ALA 123 37 1 Y 1 A ALA 382 ? A ALA 124 38 1 Y 1 A GLU 383 ? A GLU 125 39 1 Y 1 A GLY 384 ? A GLY 126 40 1 Y 1 A HIS 385 ? A HIS 127 41 1 Y 1 A HIS 386 ? A HIS 128 42 1 Y 1 A HIS 387 ? A HIS 129 43 1 Y 1 A HIS 388 ? A HIS 130 44 1 Y 1 A HIS 389 ? A HIS 131 45 1 Y 1 A HIS 390 ? A HIS 132 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #