HEADER OXIDOREDUCTASE 05-OCT-10 3P3L TITLE CRYSTAL STRUCTURE OF THE CYTOCHROME P450 MONOOXYGENASE AURH (WILDTYPE) TITLE 2 FROM STREPTOMYCES THIOLUTEUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES THIOLUTEUS; SOURCE 3 ORGANISM_TAXID: 66431; SOURCE 4 GENE: AURH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME P450, MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ZOCHER,M.E.A.RICHTER,U.MUELLER,C.HERTWECK REVDAT 5 21-FEB-24 3P3L 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 3P3L 1 AUTHOR REVDAT 3 18-MAY-11 3P3L 1 REMARK REVDAT 2 02-MAR-11 3P3L 1 JRNL REVDAT 1 16-FEB-11 3P3L 0 JRNL AUTH G.ZOCHER,M.E.RICHTER,U.MUELLER,C.HERTWECK JRNL TITL STRUCTURAL FINE-TUNING OF A MULTIFUNCTIONAL CYTOCHROME P450 JRNL TITL 2 MONOOXYGENASE. JRNL REF J.AM.CHEM.SOC. V. 133 2292 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21280577 JRNL DOI 10.1021/JA110146Z REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0085 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 49526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2606 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3586 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6300 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.29000 REMARK 3 B22 (A**2) : -1.09000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.783 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6612 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4418 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9062 ; 0.735 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10718 ; 0.688 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 818 ; 5.961 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 308 ;33.853 ;23.377 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1014 ;14.121 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;12.695 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1000 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7433 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1355 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 406 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2060 12.6030 37.6211 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.0595 REMARK 3 T33: 0.0315 T12: 0.0122 REMARK 3 T13: -0.0055 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.1067 L22: 0.3304 REMARK 3 L33: 0.2099 L12: 0.0080 REMARK 3 L13: 0.0386 L23: 0.2115 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: 0.0112 S13: -0.0158 REMARK 3 S21: -0.0143 S22: -0.0699 S23: 0.0395 REMARK 3 S31: -0.0572 S32: -0.0390 S33: 0.0409 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 406 REMARK 3 RESIDUE RANGE : B 501 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): -20.5606 34.9633 -1.7313 REMARK 3 T TENSOR REMARK 3 T11: 0.0072 T22: 0.0627 REMARK 3 T33: 0.0791 T12: -0.0012 REMARK 3 T13: -0.0205 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.1514 L22: 0.2870 REMARK 3 L33: 0.2125 L12: 0.0502 REMARK 3 L13: -0.0266 L23: 0.0183 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: -0.0024 S13: -0.0216 REMARK 3 S21: 0.0124 S22: -0.0252 S23: -0.0190 REMARK 3 S31: -0.0016 S32: -0.0047 S33: 0.0166 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 407 A 409 REMARK 3 RESIDUE RANGE : B 407 B 409 REMARK 3 ORIGIN FOR THE GROUP (A): -21.3031 29.7833 6.1182 REMARK 3 T TENSOR REMARK 3 T11: 0.0356 T22: 0.4956 REMARK 3 T33: 0.0689 T12: 0.1326 REMARK 3 T13: 0.0175 T23: 0.0760 REMARK 3 L TENSOR REMARK 3 L11: 0.0019 L22: 0.0004 REMARK 3 L33: 0.0186 L12: -0.0005 REMARK 3 L13: -0.0031 L23: -0.0010 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: -0.0197 S13: 0.0048 REMARK 3 S21: -0.0006 S22: -0.0067 S23: -0.0053 REMARK 3 S31: 0.0252 S32: 0.0951 S33: 0.0159 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 410 A 410 REMARK 3 RESIDUE RANGE : B 410 B 745 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3492 25.4508 15.7077 REMARK 3 T TENSOR REMARK 3 T11: 0.0306 T22: 0.0764 REMARK 3 T33: 0.0787 T12: -0.0092 REMARK 3 T13: -0.0104 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.0394 L22: 0.0659 REMARK 3 L33: 0.0670 L12: -0.0253 REMARK 3 L13: 0.0481 L23: -0.0330 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.0120 S13: 0.0096 REMARK 3 S21: 0.0198 S22: -0.0194 S23: 0.0191 REMARK 3 S31: 0.0012 S32: 0.0090 S33: 0.0208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3P3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DCM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56058 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : 0.11900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : 0.49900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACL, 2.0M AS, 0.1 M TRIS PH=8.6 REMARK 280 -8.8, 10 MG/ML , PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.21500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.21500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 334 CG CD NE CZ NH1 NH2 REMARK 470 THR B 4 OG1 CG2 REMARK 470 ARG B 334 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 20 49.22 -100.00 REMARK 500 PHE A 143 -55.36 -144.91 REMARK 500 TYR A 245 -61.56 -92.06 REMARK 500 PHE A 354 130.74 -37.13 REMARK 500 HIS A 389 71.11 -107.74 REMARK 500 PHE B 143 -56.19 -148.87 REMARK 500 THR B 293 -60.56 -99.96 REMARK 500 CYS B 355 121.95 -38.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 355 SG REMARK 620 2 HEM A 501 NA 96.0 REMARK 620 3 HEM A 501 NB 87.3 90.8 REMARK 620 4 HEM A 501 NC 82.7 178.8 89.2 REMARK 620 5 HEM A 501 ND 94.9 88.6 177.7 91.4 REMARK 620 6 HOH B 723 O 177.1 84.9 89.9 96.4 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 355 SG REMARK 620 2 HEM B 501 NA 94.0 REMARK 620 3 HEM B 501 NB 86.1 88.8 REMARK 620 4 HEM B 501 NC 86.0 178.8 90.0 REMARK 620 5 HEM B 501 ND 95.6 90.3 178.1 90.9 REMARK 620 6 HOH B 641 O 168.7 93.7 85.7 86.2 92.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3P3L RELATED DB: PDB REMARK 900 RELATED ID: 3P3O RELATED DB: PDB REMARK 900 RELATED ID: 3P3X RELATED DB: PDB REMARK 900 RELATED ID: 3P3Z RELATED DB: PDB DBREF 3P3L A 1 406 UNP Q70KH6 Q70KH6_9ACTO 1 406 DBREF 3P3L B 1 406 UNP Q70KH6 Q70KH6_9ACTO 1 406 SEQADV 3P3L ALA A 144 UNP Q70KH6 PRO 144 CONFLICT SEQADV 3P3L ALA B 144 UNP Q70KH6 PRO 144 CONFLICT SEQRES 1 A 406 MET SER THR THR ALA HIS THR GLU PRO SER TRP ALA ASP SEQRES 2 A 406 LEU PRO PHE LEU ASP PHE THR ASP PRO ASN PHE SER TRP SEQRES 3 A 406 ASP SER PRO GLU VAL ALA GLU ALA ARG GLU LYS SER TRP SEQRES 4 A 406 ILE ALA ARG THR PRO LEU ALA LEU LEU VAL LEU ARG TYR SEQRES 5 A 406 ALA GLU ALA ASP GLN LEU ALA ARG ASP LYS ARG LEU ILE SEQRES 6 A 406 SER GLY PHE ARG GLY LEU VAL ASP MET VAL GLY THR PRO SEQRES 7 A 406 GLU GLY PRO VAL ARG ASP PHE MET VAL ASP PHE LEU GLN SEQRES 8 A 406 SER LEU ASP GLY ALA ASP HIS ARG ARG LEU ARG GLY LEU SEQRES 9 A 406 ALA THR HIS PRO PHE THR PRO ARG ARG ILE THR ALA VAL SEQRES 10 A 406 GLN PRO PHE VAL ARG SER THR VAL GLU GLN LEU ILE ASP SEQRES 11 A 406 LYS LEU PRO GLN GLY ASP PHE ASP PHE VAL GLN HIS PHE SEQRES 12 A 406 ALA HIS PRO LEU PRO ALA LEU VAL MET CYS GLN LEU LEU SEQRES 13 A 406 GLY PHE PRO LEU GLU ASP TYR ASP THR VAL GLY ARG LEU SEQRES 14 A 406 SER ILE GLU THR ASN LEU GLY LEU ALA LEU SER ASN ASP SEQRES 15 A 406 GLN ASP ILE LEU VAL LYS VAL GLU GLN GLY LEU GLY ARG SEQRES 16 A 406 MET PHE ASP TYR LEU VAL ALA ALA ILE GLU LYS ARG LYS SEQRES 17 A 406 VAL GLU PRO GLY ASP ASP LEU THR SER ASP ILE VAL ARG SEQRES 18 A 406 ALA PHE HIS ASP GLY VAL LEU ASP ASP TYR GLU LEU ARG SEQRES 19 A 406 THR LEU VAL ALA THR VAL LEU VAL ALA GLY TYR GLU THR SEQRES 20 A 406 THR ASN HIS GLN LEU ALA LEU ALA MET TYR ASP PHE ALA SEQRES 21 A 406 GLN HIS PRO ASP GLN TRP MET LYS ILE LYS GLU ASN PRO SEQRES 22 A 406 GLU LEU ALA PRO GLN ALA VAL GLU GLU VAL LEU ARG TRP SEQRES 23 A 406 SER PRO THR LEU PRO VAL THR ALA THR ARG VAL ALA ALA SEQRES 24 A 406 GLU ASP PHE GLU VAL ASN GLY VAL ARG ILE PRO THR GLY SEQRES 25 A 406 THR PRO VAL PHE MET CYS ALA HIS VAL ALA HIS ARG ASP SEQRES 26 A 406 PRO ARG VAL PHE ALA ASP ALA ASP ARG PHE ASP ILE THR SEQRES 27 A 406 VAL LYS ARG GLU ALA PRO SER ILE ALA PHE GLY GLY GLY SEQRES 28 A 406 PRO HIS PHE CYS LEU GLY THR ALA LEU ALA ARG LEU GLU SEQRES 29 A 406 LEU THR GLU ALA VAL ALA ALA LEU ALA THR ARG LEU ASP SEQRES 30 A 406 PRO PRO GLN ILE ALA GLY GLU ILE THR TRP ARG HIS GLU SEQRES 31 A 406 LEU GLY VAL ALA GLY PRO ASP ALA LEU PRO LEU ARG PHE SEQRES 32 A 406 GLY ALA ALA SEQRES 1 B 406 MET SER THR THR ALA HIS THR GLU PRO SER TRP ALA ASP SEQRES 2 B 406 LEU PRO PHE LEU ASP PHE THR ASP PRO ASN PHE SER TRP SEQRES 3 B 406 ASP SER PRO GLU VAL ALA GLU ALA ARG GLU LYS SER TRP SEQRES 4 B 406 ILE ALA ARG THR PRO LEU ALA LEU LEU VAL LEU ARG TYR SEQRES 5 B 406 ALA GLU ALA ASP GLN LEU ALA ARG ASP LYS ARG LEU ILE SEQRES 6 B 406 SER GLY PHE ARG GLY LEU VAL ASP MET VAL GLY THR PRO SEQRES 7 B 406 GLU GLY PRO VAL ARG ASP PHE MET VAL ASP PHE LEU GLN SEQRES 8 B 406 SER LEU ASP GLY ALA ASP HIS ARG ARG LEU ARG GLY LEU SEQRES 9 B 406 ALA THR HIS PRO PHE THR PRO ARG ARG ILE THR ALA VAL SEQRES 10 B 406 GLN PRO PHE VAL ARG SER THR VAL GLU GLN LEU ILE ASP SEQRES 11 B 406 LYS LEU PRO GLN GLY ASP PHE ASP PHE VAL GLN HIS PHE SEQRES 12 B 406 ALA HIS PRO LEU PRO ALA LEU VAL MET CYS GLN LEU LEU SEQRES 13 B 406 GLY PHE PRO LEU GLU ASP TYR ASP THR VAL GLY ARG LEU SEQRES 14 B 406 SER ILE GLU THR ASN LEU GLY LEU ALA LEU SER ASN ASP SEQRES 15 B 406 GLN ASP ILE LEU VAL LYS VAL GLU GLN GLY LEU GLY ARG SEQRES 16 B 406 MET PHE ASP TYR LEU VAL ALA ALA ILE GLU LYS ARG LYS SEQRES 17 B 406 VAL GLU PRO GLY ASP ASP LEU THR SER ASP ILE VAL ARG SEQRES 18 B 406 ALA PHE HIS ASP GLY VAL LEU ASP ASP TYR GLU LEU ARG SEQRES 19 B 406 THR LEU VAL ALA THR VAL LEU VAL ALA GLY TYR GLU THR SEQRES 20 B 406 THR ASN HIS GLN LEU ALA LEU ALA MET TYR ASP PHE ALA SEQRES 21 B 406 GLN HIS PRO ASP GLN TRP MET LYS ILE LYS GLU ASN PRO SEQRES 22 B 406 GLU LEU ALA PRO GLN ALA VAL GLU GLU VAL LEU ARG TRP SEQRES 23 B 406 SER PRO THR LEU PRO VAL THR ALA THR ARG VAL ALA ALA SEQRES 24 B 406 GLU ASP PHE GLU VAL ASN GLY VAL ARG ILE PRO THR GLY SEQRES 25 B 406 THR PRO VAL PHE MET CYS ALA HIS VAL ALA HIS ARG ASP SEQRES 26 B 406 PRO ARG VAL PHE ALA ASP ALA ASP ARG PHE ASP ILE THR SEQRES 27 B 406 VAL LYS ARG GLU ALA PRO SER ILE ALA PHE GLY GLY GLY SEQRES 28 B 406 PRO HIS PHE CYS LEU GLY THR ALA LEU ALA ARG LEU GLU SEQRES 29 B 406 LEU THR GLU ALA VAL ALA ALA LEU ALA THR ARG LEU ASP SEQRES 30 B 406 PRO PRO GLN ILE ALA GLY GLU ILE THR TRP ARG HIS GLU SEQRES 31 B 406 LEU GLY VAL ALA GLY PRO ASP ALA LEU PRO LEU ARG PHE SEQRES 32 B 406 GLY ALA ALA HET HEM A 501 43 HET SO4 A 407 5 HET SO4 A 408 5 HET EPE A 409 15 HET HEM B 501 43 HET SO4 B 407 5 HET EPE B 408 15 HET CL B 409 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM CL CHLORIDE ION HETSYN HEM HEME HETSYN EPE HEPES FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 SO4 3(O4 S 2-) FORMUL 6 EPE 2(C8 H18 N2 O4 S) FORMUL 10 CL CL 1- FORMUL 11 HOH *337(H2 O) HELIX 1 1 GLU A 8 ALA A 12 5 5 HELIX 2 2 SER A 28 SER A 38 1 11 HELIX 3 3 ARG A 51 ALA A 59 1 9 HELIX 4 4 GLY A 67 GLY A 76 1 10 HELIX 5 5 GLY A 80 PHE A 89 1 10 HELIX 6 6 LEU A 90 LEU A 93 5 4 HELIX 7 7 ASP A 94 HIS A 107 1 14 HELIX 8 8 THR A 110 LYS A 131 1 22 HELIX 9 9 PHE A 139 PHE A 143 1 5 HELIX 10 10 HIS A 145 GLY A 157 1 13 HELIX 11 11 PRO A 159 GLU A 161 5 3 HELIX 12 12 ASP A 162 GLU A 172 1 11 HELIX 13 13 THR A 173 ALA A 178 5 6 HELIX 14 14 ASP A 182 GLU A 210 1 29 HELIX 15 15 ASP A 214 ASP A 225 1 12 HELIX 16 16 ASP A 229 HIS A 262 1 34 HELIX 17 17 HIS A 262 ASN A 272 1 11 HELIX 18 18 LEU A 275 SER A 287 1 13 HELIX 19 19 CYS A 318 HIS A 323 1 6 HELIX 20 20 GLY A 350 PHE A 354 5 5 HELIX 21 21 GLY A 357 LEU A 376 1 20 HELIX 22 22 GLU B 8 ALA B 12 5 5 HELIX 23 23 SER B 28 SER B 38 1 11 HELIX 24 24 ARG B 51 ALA B 59 1 9 HELIX 25 25 GLY B 67 GLY B 76 1 10 HELIX 26 26 GLY B 80 PHE B 89 1 10 HELIX 27 27 LEU B 90 LEU B 93 5 4 HELIX 28 28 ASP B 94 HIS B 107 1 14 HELIX 29 29 THR B 110 LYS B 131 1 22 HELIX 30 30 PHE B 139 PHE B 143 1 5 HELIX 31 31 HIS B 145 GLY B 157 1 13 HELIX 32 32 PRO B 159 GLU B 161 5 3 HELIX 33 33 ASP B 162 GLU B 172 1 11 HELIX 34 34 THR B 173 ALA B 178 5 6 HELIX 35 35 ASP B 182 GLU B 210 1 29 HELIX 36 36 ASP B 214 ASP B 225 1 12 HELIX 37 37 ASP B 229 HIS B 262 1 34 HELIX 38 38 HIS B 262 ASN B 272 1 11 HELIX 39 39 LEU B 275 SER B 287 1 13 HELIX 40 40 ALA B 319 HIS B 323 1 5 HELIX 41 41 GLY B 350 PHE B 354 5 5 HELIX 42 42 GLY B 357 LEU B 376 1 20 SHEET 1 A 5 ILE A 40 ARG A 42 0 SHEET 2 A 5 LEU A 47 VAL A 49 -1 O LEU A 48 N ALA A 41 SHEET 3 A 5 PRO A 314 MET A 317 1 O PHE A 316 N LEU A 47 SHEET 4 A 5 ARG A 296 ALA A 298 -1 N ARG A 296 O VAL A 315 SHEET 5 A 5 LEU A 64 SER A 66 -1 N ILE A 65 O VAL A 297 SHEET 1 B 3 PHE A 137 ASP A 138 0 SHEET 2 B 3 PRO A 400 PHE A 403 -1 O LEU A 401 N PHE A 137 SHEET 3 B 3 PRO A 379 ILE A 381 -1 N GLN A 380 O ARG A 402 SHEET 1 C 2 PHE A 302 VAL A 304 0 SHEET 2 C 2 VAL A 307 ILE A 309 -1 O ILE A 309 N PHE A 302 SHEET 1 D 2 THR A 386 TRP A 387 0 SHEET 2 D 2 PRO A 396 ALA A 398 -1 O ASP A 397 N THR A 386 SHEET 1 E 5 ILE B 40 ARG B 42 0 SHEET 2 E 5 LEU B 47 VAL B 49 -1 O LEU B 48 N ALA B 41 SHEET 3 E 5 PRO B 314 CYS B 318 1 O PHE B 316 N LEU B 47 SHEET 4 E 5 VAL B 292 ALA B 298 -1 N ALA B 294 O MET B 317 SHEET 5 E 5 LEU B 64 SER B 66 -1 N ILE B 65 O VAL B 297 SHEET 1 F 3 PHE B 137 ASP B 138 0 SHEET 2 F 3 PRO B 400 PHE B 403 -1 O LEU B 401 N PHE B 137 SHEET 3 F 3 PRO B 379 ILE B 381 -1 N GLN B 380 O ARG B 402 SHEET 1 G 2 PHE B 302 VAL B 304 0 SHEET 2 G 2 VAL B 307 ILE B 309 -1 O ILE B 309 N PHE B 302 SHEET 1 H 2 THR B 386 TRP B 387 0 SHEET 2 H 2 PRO B 396 ALA B 398 -1 O ASP B 397 N THR B 386 LINK SG CYS A 355 FE HEM A 501 1555 1555 2.41 LINK FE HEM A 501 O HOH B 723 1555 1555 1.92 LINK SG CYS B 355 FE HEM B 501 1555 1555 2.39 LINK FE HEM B 501 O HOH B 641 1555 1555 2.24 SITE 1 AC1 28 LEU A 90 GLN A 91 HIS A 98 ARG A 102 SITE 2 AC1 28 PHE A 109 ALA A 243 GLY A 244 THR A 247 SITE 3 AC1 28 THR A 248 GLN A 251 LEU A 284 THR A 289 SITE 4 AC1 28 LEU A 290 THR A 293 ARG A 296 ALA A 347 SITE 5 AC1 28 PHE A 348 GLY A 349 GLY A 350 HIS A 353 SITE 6 AC1 28 CYS A 355 GLY A 357 LEU A 360 GLU A 364 SITE 7 AC1 28 HOH B 434 HOH B 441 HOH B 562 HOH B 723 SITE 1 AC2 26 LEU B 90 GLN B 91 HIS B 98 ARG B 102 SITE 2 AC2 26 PHE B 109 ALA B 243 GLY B 244 THR B 247 SITE 3 AC2 26 THR B 248 LEU B 284 THR B 289 LEU B 290 SITE 4 AC2 26 THR B 293 ARG B 296 ALA B 347 PHE B 348 SITE 5 AC2 26 GLY B 349 GLY B 350 HIS B 353 CYS B 355 SITE 6 AC2 26 LEU B 356 GLY B 357 LEU B 360 ALA B 361 SITE 7 AC2 26 HOH B 615 HOH B 641 SITE 1 AC3 7 ARG A 60 PHE A 223 GLY A 351 PRO A 352 SITE 2 AC3 7 EPE A 409 HOH B 529 HOH B 541 SITE 1 AC4 5 ALA A 5 HIS A 6 THR A 7 ARG B 69 SITE 2 AC4 5 HOH B 721 SITE 1 AC5 3 ARG A 69 ALA B 5 HIS B 6 SITE 1 AC6 12 HIS A 98 ARG A 99 ARG A 102 PHE A 223 SITE 2 AC6 12 HIS A 224 GLY A 351 PRO A 352 PHE A 354 SITE 3 AC6 12 SO4 A 407 HOH B 426 HOH B 499 HOH B 736 SITE 1 AC7 11 HIS B 98 ARG B 99 ARG B 102 PHE B 223 SITE 2 AC7 11 HIS B 224 GLY B 351 PRO B 352 PHE B 354 SITE 3 AC7 11 HOH B 429 HOH B 717 HOH B 746 SITE 1 AC8 2 ARG B 69 ARG B 112 CRYST1 152.430 54.140 130.300 90.00 123.32 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006560 0.000000 0.004313 0.00000 SCALE2 0.000000 0.018471 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009185 0.00000