HEADER OXIDOREDUCTASE 05-OCT-10 3P3O TITLE CRYSTAL STRUCTURE OF THE CYTOCHROME P450 MONOOXYGENASE AURH (NTERMII) TITLE 2 FROM STREPTOMYCES THIOLUTEUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES THIOLUTEUS; SOURCE 3 ORGANISM_TAXID: 66431; SOURCE 4 GENE: AURH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME P450, MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ZOCHER,M.E.A.RICHTER,U.MUELLER,C.HERTWECK REVDAT 3 21-FEB-24 3P3O 1 REMARK SEQADV LINK REVDAT 2 02-MAR-11 3P3O 1 JRNL REVDAT 1 16-FEB-11 3P3O 0 JRNL AUTH G.ZOCHER,M.E.RICHTER,U.MUELLER,C.HERTWECK JRNL TITL STRUCTURAL FINE-TUNING OF A MULTIFUNCTIONAL CYTOCHROME P450 JRNL TITL 2 MONOOXYGENASE. JRNL REF J.AM.CHEM.SOC. V. 133 2292 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21280577 JRNL DOI 10.1021/JA110146Z REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0082 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 61563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3240 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4555 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 240 REMARK 3 BIN FREE R VALUE : 0.2230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3249 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 425 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : -0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.944 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3637 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2424 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5015 ; 1.575 ; 2.035 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5879 ; 0.978 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 5.883 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;36.509 ;23.372 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 554 ;13.290 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;16.474 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4149 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 752 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2190 ; 2.129 ; 5.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 864 ; 0.969 ; 5.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3564 ; 2.989 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1447 ; 3.362 ; 6.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1445 ; 4.464 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -9 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1190 -6.0910 35.3100 REMARK 3 T TENSOR REMARK 3 T11: 0.0867 T22: 0.1943 REMARK 3 T33: 0.1283 T12: 0.0315 REMARK 3 T13: -0.0237 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 1.7460 L22: 1.2288 REMARK 3 L33: 3.1652 L12: -0.5487 REMARK 3 L13: -1.2959 L23: 1.4317 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: 0.0537 S13: -0.1984 REMARK 3 S21: -0.1705 S22: -0.2326 S23: 0.2820 REMARK 3 S31: -0.0125 S32: -0.4094 S33: 0.2508 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5410 -3.4410 42.5980 REMARK 3 T TENSOR REMARK 3 T11: 0.0702 T22: 0.0795 REMARK 3 T33: 0.0695 T12: 0.0261 REMARK 3 T13: 0.0242 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.2662 L22: 1.5342 REMARK 3 L33: 2.7736 L12: 0.2322 REMARK 3 L13: 0.2106 L23: 0.3798 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: -0.0399 S13: -0.1268 REMARK 3 S21: -0.0444 S22: -0.0665 S23: 0.0081 REMARK 3 S31: 0.1423 S32: -0.1603 S33: 0.0853 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0630 16.4050 31.6770 REMARK 3 T TENSOR REMARK 3 T11: 0.3531 T22: 0.1368 REMARK 3 T33: 0.1265 T12: 0.1115 REMARK 3 T13: -0.1367 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 4.6886 L22: 3.9002 REMARK 3 L33: 2.7871 L12: 0.1157 REMARK 3 L13: 0.9506 L23: 0.6362 REMARK 3 S TENSOR REMARK 3 S11: 0.1123 S12: 0.5152 S13: -0.0472 REMARK 3 S21: -1.0405 S22: -0.2308 S23: 0.3530 REMARK 3 S31: -0.3432 S32: 0.1272 S33: 0.1186 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5300 21.4370 51.1980 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.0460 REMARK 3 T33: 0.2382 T12: 0.0289 REMARK 3 T13: 0.0032 T23: -0.0592 REMARK 3 L TENSOR REMARK 3 L11: 1.2508 L22: 1.1410 REMARK 3 L33: 0.7401 L12: 0.3419 REMARK 3 L13: -0.0810 L23: -0.2037 REMARK 3 S TENSOR REMARK 3 S11: 0.1252 S12: -0.0520 S13: 0.4631 REMARK 3 S21: 0.0182 S22: -0.1097 S23: 0.3022 REMARK 3 S31: -0.2293 S32: -0.0118 S33: -0.0155 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 385 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4390 3.7130 53.5300 REMARK 3 T TENSOR REMARK 3 T11: 0.0374 T22: 0.0530 REMARK 3 T33: 0.0215 T12: 0.0079 REMARK 3 T13: -0.0062 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.1957 L22: 0.5784 REMARK 3 L33: 0.5647 L12: 0.2077 REMARK 3 L13: -0.4079 L23: -0.0940 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: -0.1411 S13: 0.0543 REMARK 3 S21: 0.0159 S22: -0.0982 S23: 0.0511 REMARK 3 S31: 0.0043 S32: 0.0601 S33: 0.0451 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 386 A 399 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2490 5.7410 47.6820 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.1612 REMARK 3 T33: 0.1991 T12: -0.0082 REMARK 3 T13: -0.0415 T23: -0.1060 REMARK 3 L TENSOR REMARK 3 L11: 16.2489 L22: 2.1529 REMARK 3 L33: 9.2050 L12: -1.7492 REMARK 3 L13: -4.9228 L23: -1.3775 REMARK 3 S TENSOR REMARK 3 S11: 0.1877 S12: 0.8697 S13: -0.4299 REMARK 3 S21: -0.1780 S22: -0.2376 S23: 0.3056 REMARK 3 S31: 0.0455 S32: -0.5214 S33: 0.0498 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 400 A 406 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3130 6.1640 66.7270 REMARK 3 T TENSOR REMARK 3 T11: 0.1352 T22: 0.1751 REMARK 3 T33: 0.2355 T12: 0.0003 REMARK 3 T13: 0.0361 T23: -0.0637 REMARK 3 L TENSOR REMARK 3 L11: 6.6670 L22: 5.2268 REMARK 3 L33: 1.8274 L12: 0.3996 REMARK 3 L13: -0.9801 L23: -3.0164 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: -0.3677 S13: 0.0550 REMARK 3 S21: 0.2149 S22: 0.1088 S23: 0.1854 REMARK 3 S31: -0.1318 S32: -0.0291 S33: -0.1549 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3P3O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-08; 19-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BESSY; BESSY REMARK 200 BEAMLINE : 14.1; 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841; 1.73844, 1.74044, REMARK 200 1.63138, 1.85053 REMARK 200 MONOCHROMATOR : DCM; DCM REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64806 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NACL, 2.2M AS, 0.1 M TRIS PH=8.6 REMARK 280 -8.8, 14 MG/ML, PH 8.7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.53000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.25641 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.80333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 64.53000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 37.25641 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.80333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 64.53000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 37.25641 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.80333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.51283 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.60667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 74.51283 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.60667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 74.51283 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.60667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -4 OG REMARK 470 ASP A 73 CG OD1 OD2 REMARK 470 PRO A 144 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 VAL A 297 O HOH A 528 2.03 REMARK 500 O HOH A 500 O HOH A 667 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 324 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 402 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 402 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 143 -58.90 -153.67 REMARK 500 THR A 293 -87.27 -98.47 REMARK 500 ASN A 305 49.55 30.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 355 SG REMARK 620 2 HEM A 501 NA 99.1 REMARK 620 3 HEM A 501 NB 103.9 95.6 REMARK 620 4 HEM A 501 NC 98.8 152.1 100.6 REMARK 620 5 HEM A 501 ND 95.9 74.3 159.0 82.7 REMARK 620 6 HOH A 572 O 174.2 78.7 81.7 81.4 78.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 355 SG REMARK 620 2 HEM A 501 NA 97.9 REMARK 620 3 HEM A 501 NB 85.3 91.1 REMARK 620 4 HEM A 501 NC 89.0 172.1 85.6 REMARK 620 5 HEM A 501 ND 102.1 89.9 172.4 92.5 REMARK 620 6 HOH A 572 O 162.9 88.4 78.6 84.0 93.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 412 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3P3L RELATED DB: PDB REMARK 900 RELATED ID: 3P3X RELATED DB: PDB REMARK 900 RELATED ID: 3P3Z RELATED DB: PDB DBREF 3P3O A 1 406 UNP Q70KH6 Q70KH6_9ACTO 1 406 SEQADV 3P3O ILE A -9 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3O SER A -8 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3O GLU A -7 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3O PHE A -6 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3O ASP A -5 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3O SER A -4 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3O GLU A -3 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3O GLY A -2 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3O SER A -1 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3O ASN A 0 UNP Q70KH6 EXPRESSION TAG SEQRES 1 A 416 ILE SER GLU PHE ASP SER GLU GLY SER ASN MET SER THR SEQRES 2 A 416 THR ALA HIS THR GLU PRO SER TRP ALA ASP LEU PRO PHE SEQRES 3 A 416 LEU ASP PHE THR ASP PRO ASN PHE SER TRP ASP SER PRO SEQRES 4 A 416 GLU VAL ALA GLU ALA ARG GLU LYS SER TRP ILE ALA ARG SEQRES 5 A 416 THR PRO LEU ALA LEU LEU VAL LEU ARG TYR ALA GLU ALA SEQRES 6 A 416 ASP GLN LEU ALA ARG ASP LYS ARG LEU ILE SER GLY PHE SEQRES 7 A 416 ARG GLY LEU VAL ASP MET VAL GLY THR PRO GLU GLY PRO SEQRES 8 A 416 VAL ARG ASP PHE MET VAL ASP PHE LEU GLN SER LEU ASP SEQRES 9 A 416 GLY ALA ASP HIS ARG ARG LEU ARG GLY LEU ALA THR HIS SEQRES 10 A 416 PRO PHE THR PRO ARG ARG ILE THR ALA VAL GLN PRO PHE SEQRES 11 A 416 VAL ARG SER THR VAL GLU GLN LEU ILE ASP LYS LEU PRO SEQRES 12 A 416 GLN GLY ASP PHE ASP PHE VAL GLN HIS PHE PRO HIS PRO SEQRES 13 A 416 LEU PRO ALA LEU VAL MET CYS GLN LEU LEU GLY PHE PRO SEQRES 14 A 416 LEU GLU ASP TYR ASP THR VAL GLY ARG LEU SER ILE GLU SEQRES 15 A 416 THR ASN LEU GLY LEU ALA LEU SER ASN ASP GLN ASP ILE SEQRES 16 A 416 LEU VAL LYS VAL GLU GLN GLY LEU GLY ARG MET PHE ASP SEQRES 17 A 416 TYR LEU VAL ALA ALA ILE GLU LYS ARG LYS VAL GLU PRO SEQRES 18 A 416 GLY ASP ASP LEU THR SER ASP ILE VAL ARG ALA PHE HIS SEQRES 19 A 416 ASP GLY VAL LEU ASP ASP TYR GLU LEU ARG THR LEU VAL SEQRES 20 A 416 ALA THR VAL LEU VAL ALA GLY TYR GLU THR THR ASN HIS SEQRES 21 A 416 GLN LEU ALA LEU ALA MET TYR ASP PHE ALA GLN HIS PRO SEQRES 22 A 416 ASP GLN TRP MET LYS ILE LYS GLU ASN PRO GLU LEU ALA SEQRES 23 A 416 PRO GLN ALA VAL GLU GLU VAL LEU ARG TRP SER PRO THR SEQRES 24 A 416 LEU PRO VAL THR ALA THR ARG VAL ALA ALA GLU ASP PHE SEQRES 25 A 416 GLU VAL ASN GLY VAL ARG ILE PRO THR GLY THR PRO VAL SEQRES 26 A 416 PHE MET CYS ALA HIS VAL ALA HIS ARG ASP PRO ARG VAL SEQRES 27 A 416 PHE ALA ASP ALA ASP ARG PHE ASP ILE THR VAL LYS ARG SEQRES 28 A 416 GLU ALA PRO SER ILE ALA PHE GLY GLY GLY PRO HIS PHE SEQRES 29 A 416 CYS LEU GLY THR ALA LEU ALA ARG LEU GLU LEU THR GLU SEQRES 30 A 416 ALA VAL ALA ALA LEU ALA THR ARG LEU ASP PRO PRO GLN SEQRES 31 A 416 ILE ALA GLY GLU ILE THR TRP ARG HIS GLU LEU GLY VAL SEQRES 32 A 416 ALA GLY PRO ASP ALA LEU PRO LEU ARG PHE GLY ALA ALA HET HEM A 501 86 HET GOL A 407 6 HET GOL A 408 6 HET SO4 A 409 5 HET CL A 410 1 HET CL A 411 1 HET CL A 412 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 SO4 O4 S 2- FORMUL 6 CL 3(CL 1-) FORMUL 9 HOH *425(H2 O) HELIX 1 1 GLY A -2 HIS A 6 1 9 HELIX 2 2 THR A 7 ALA A 12 5 6 HELIX 3 3 SER A 28 SER A 38 1 11 HELIX 4 4 ARG A 51 ASP A 61 1 11 HELIX 5 5 GLY A 67 GLY A 76 1 10 HELIX 6 6 GLY A 80 PHE A 89 1 10 HELIX 7 7 LEU A 90 LEU A 93 5 4 HELIX 8 8 ASP A 94 LEU A 104 1 11 HELIX 9 9 ALA A 105 PHE A 109 5 5 HELIX 10 10 THR A 110 LYS A 131 1 22 HELIX 11 11 PHE A 139 PHE A 143 1 5 HELIX 12 12 HIS A 145 GLY A 157 1 13 HELIX 13 13 PRO A 159 GLU A 161 5 3 HELIX 14 14 ASP A 162 GLU A 172 1 11 HELIX 15 15 THR A 173 ALA A 178 5 6 HELIX 16 16 ASP A 182 GLU A 210 1 29 HELIX 17 17 ASP A 214 ASP A 225 1 12 HELIX 18 18 ASP A 229 HIS A 262 1 34 HELIX 19 19 HIS A 262 ASN A 272 1 11 HELIX 20 20 LEU A 275 SER A 287 1 13 HELIX 21 21 CYS A 318 HIS A 323 1 6 HELIX 22 22 GLY A 357 LEU A 376 1 20 SHEET 1 A 5 ILE A 40 ARG A 42 0 SHEET 2 A 5 LEU A 47 VAL A 49 -1 O LEU A 48 N ALA A 41 SHEET 3 A 5 PRO A 314 MET A 317 1 O PHE A 316 N LEU A 47 SHEET 4 A 5 THR A 295 ALA A 298 -1 N ARG A 296 O VAL A 315 SHEET 5 A 5 LEU A 64 ILE A 65 -1 N ILE A 65 O VAL A 297 SHEET 1 B 3 PHE A 137 ASP A 138 0 SHEET 2 B 3 PRO A 400 PHE A 403 -1 O LEU A 401 N PHE A 137 SHEET 3 B 3 PRO A 379 ILE A 381 -1 N GLN A 380 O ARG A 402 SHEET 1 C 2 PHE A 302 VAL A 304 0 SHEET 2 C 2 VAL A 307 ILE A 309 -1 O ILE A 309 N PHE A 302 SHEET 1 D 2 THR A 386 TRP A 387 0 SHEET 2 D 2 PRO A 396 ALA A 398 -1 O ASP A 397 N THR A 386 LINK SG CYS A 355 FE BHEM A 501 1555 1555 2.18 LINK SG CYS A 355 FE AHEM A 501 1555 1555 2.42 LINK FE AHEM A 501 O HOH A 572 1555 1555 2.13 LINK FE BHEM A 501 O HOH A 572 1555 1555 2.32 SITE 1 AC1 30 LEU A 90 GLN A 91 HIS A 98 ARG A 102 SITE 2 AC1 30 PHE A 109 ALA A 243 GLY A 244 THR A 247 SITE 3 AC1 30 THR A 248 GLN A 251 THR A 289 LEU A 290 SITE 4 AC1 30 THR A 293 ALA A 294 ARG A 296 ALA A 347 SITE 5 AC1 30 PHE A 348 GLY A 349 GLY A 350 HIS A 353 SITE 6 AC1 30 CYS A 355 LEU A 356 GLY A 357 LEU A 360 SITE 7 AC1 30 ALA A 361 GLU A 364 GOL A 408 HOH A 572 SITE 8 AC1 30 HOH A 813 HOH A 814 SITE 1 AC2 7 ARG A 327 VAL A 328 HOH A 472 HOH A 506 SITE 2 AC2 7 HOH A 691 HOH A 698 HOH A 733 SITE 1 AC3 9 GLN A 91 VAL A 292 THR A 293 THR A 295 SITE 2 AC3 9 HOH A 453 HEM A 501 HOH A 518 HOH A 813 SITE 3 AC3 9 HOH A 815 SITE 1 AC4 2 ARG A 99 HOH A 727 SITE 1 AC5 2 ARG A 51 HOH A 524 SITE 1 AC6 5 ARG A 35 GLU A 36 PRO A 326 ARG A 327 SITE 2 AC6 5 HOH A 834 SITE 1 AC7 2 ALA A 330 ARG A 341 CRYST1 129.060 129.060 71.410 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007748 0.004474 0.000000 0.00000 SCALE2 0.000000 0.008947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014004 0.00000