HEADER OXIDOREDUCTASE 05-OCT-10 3P3Z TITLE CRYSTAL STRUCTURE OF THE CYTOCHROME P450 MONOOXYGENASE AURH FROM TITLE 2 STREPTOMYCES THIOLUTEUS IN COMPLEX WITH ANCYMIDOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES THIOLUTEUS; SOURCE 3 ORGANISM_TAXID: 66431; SOURCE 4 GENE: AURH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME P450 MONOOXYGENASE, OXIDATION FROM DEOXYAUREOTHIN TO KEYWDS 2 AUREOTHIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ZOCHER,M.E.A.RICHTER,U.MUELLER,C.HERTWECK REVDAT 5 21-FEB-24 3P3Z 1 REMARK SEQADV LINK REVDAT 4 21-MAR-18 3P3Z 1 REMARK REVDAT 3 08-NOV-17 3P3Z 1 REMARK REVDAT 2 02-MAR-11 3P3Z 1 JRNL REVDAT 1 16-FEB-11 3P3Z 0 JRNL AUTH G.ZOCHER,M.E.RICHTER,U.MUELLER,C.HERTWECK JRNL TITL STRUCTURAL FINE-TUNING OF A MULTIFUNCTIONAL CYTOCHROME P450 JRNL TITL 2 MONOOXYGENASE. JRNL REF J.AM.CHEM.SOC. V. 133 2292 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21280577 JRNL DOI 10.1021/JA110146Z REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 970 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1351 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.02000 REMARK 3 B22 (A**2) : -1.02000 REMARK 3 B33 (A**2) : 1.53000 REMARK 3 B12 (A**2) : -0.51000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.187 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3356 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2236 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4599 ; 0.922 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5404 ; 0.818 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 5.260 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;35.435 ;23.355 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 503 ;12.567 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;13.772 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.047 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3762 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 683 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 502 REMARK 3 RESIDUE RANGE : A 1 A 550 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3804 10.8058 48.4576 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.0452 REMARK 3 T33: 0.0584 T12: 0.0382 REMARK 3 T13: -0.0373 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.8379 L22: 1.1202 REMARK 3 L33: 1.7785 L12: -0.2161 REMARK 3 L13: -0.9035 L23: 0.5652 REMARK 3 S TENSOR REMARK 3 S11: 0.1238 S12: 0.1117 S13: 0.1828 REMARK 3 S21: -0.1645 S22: -0.1906 S23: 0.1266 REMARK 3 S31: -0.3488 S32: -0.1479 S33: 0.0667 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3P3Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000061926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DCM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACL, 2.2M AS, 0.1 M TRIS PH=8.6 REMARK 280 -8.8, 14 MG/ML, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.68500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.34590 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.69000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 64.68500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 37.34590 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.69000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 64.68500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 37.34590 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.69000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.69180 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.38000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 74.69180 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.38000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 74.69180 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.38000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A -9 REMARK 465 SER A -8 REMARK 465 GLU A -7 REMARK 465 PHE A -6 REMARK 465 ASP A -5 REMARK 465 SER A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 0 CG OD1 ND2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 ARG A 334 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 143 -66.98 -143.85 REMARK 500 TYR A 245 -63.03 -104.49 REMARK 500 THR A 293 -79.25 -100.31 REMARK 500 ASN A 305 52.37 39.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 355 SG REMARK 620 2 HEM A 501 NA 97.2 REMARK 620 3 HEM A 501 NB 82.9 89.9 REMARK 620 4 HEM A 501 NC 84.2 178.5 89.6 REMARK 620 5 HEM A 501 ND 95.6 90.6 178.5 89.9 REMARK 620 6 P3Z A 502 NAM 178.6 81.5 96.6 97.1 84.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P3Z A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 411 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3P3L RELATED DB: PDB REMARK 900 RELATED ID: 3P3O RELATED DB: PDB REMARK 900 RELATED ID: 3P3X RELATED DB: PDB DBREF 3P3Z A 1 406 UNP Q70KH6 Q70KH6_9ACTO 1 406 SEQADV 3P3Z ILE A -9 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3Z SER A -8 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3Z GLU A -7 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3Z PHE A -6 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3Z ASP A -5 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3Z SER A -4 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3Z GLU A -3 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3Z GLY A -2 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3Z SER A -1 UNP Q70KH6 EXPRESSION TAG SEQADV 3P3Z ASN A 0 UNP Q70KH6 EXPRESSION TAG SEQRES 1 A 416 ILE SER GLU PHE ASP SER GLU GLY SER ASN MET SER THR SEQRES 2 A 416 THR ALA HIS THR GLU PRO SER TRP ALA ASP LEU PRO PHE SEQRES 3 A 416 LEU ASP PHE THR ASP PRO ASN PHE SER TRP ASP SER PRO SEQRES 4 A 416 GLU VAL ALA GLU ALA ARG GLU LYS SER TRP ILE ALA ARG SEQRES 5 A 416 THR PRO LEU ALA LEU LEU VAL LEU ARG TYR ALA GLU ALA SEQRES 6 A 416 ASP GLN LEU ALA ARG ASP LYS ARG LEU ILE SER GLY PHE SEQRES 7 A 416 ARG GLY LEU VAL ASP MET VAL GLY THR PRO GLU GLY PRO SEQRES 8 A 416 VAL ARG ASP PHE MET VAL ASP PHE LEU GLN SER LEU ASP SEQRES 9 A 416 GLY ALA ASP HIS ARG ARG LEU ARG GLY LEU ALA THR HIS SEQRES 10 A 416 PRO PHE THR PRO ARG ARG ILE THR ALA VAL GLN PRO PHE SEQRES 11 A 416 VAL ARG SER THR VAL GLU GLN LEU ILE ASP LYS LEU PRO SEQRES 12 A 416 GLN GLY ASP PHE ASP PHE VAL GLN HIS PHE PRO HIS PRO SEQRES 13 A 416 LEU PRO ALA LEU VAL MET CYS GLN LEU LEU GLY PHE PRO SEQRES 14 A 416 LEU GLU ASP TYR ASP THR VAL GLY ARG LEU SER ILE GLU SEQRES 15 A 416 THR ASN LEU GLY LEU ALA LEU SER ASN ASP GLN ASP ILE SEQRES 16 A 416 LEU VAL LYS VAL GLU GLN GLY LEU GLY ARG MET PHE ASP SEQRES 17 A 416 TYR LEU VAL ALA ALA ILE GLU LYS ARG LYS VAL GLU PRO SEQRES 18 A 416 GLY ASP ASP LEU THR SER ASP ILE VAL ARG ALA PHE HIS SEQRES 19 A 416 ASP GLY VAL LEU ASP ASP TYR GLU LEU ARG THR LEU VAL SEQRES 20 A 416 ALA THR VAL LEU VAL ALA GLY TYR GLU THR THR ASN HIS SEQRES 21 A 416 GLN LEU ALA LEU ALA MET TYR ASP PHE ALA GLN HIS PRO SEQRES 22 A 416 ASP GLN TRP MET LYS ILE LYS GLU ASN PRO GLU LEU ALA SEQRES 23 A 416 PRO GLN ALA VAL GLU GLU VAL LEU ARG TRP SER PRO THR SEQRES 24 A 416 LEU PRO VAL THR ALA THR ARG VAL ALA ALA GLU ASP PHE SEQRES 25 A 416 GLU VAL ASN GLY VAL ARG ILE PRO THR GLY THR PRO VAL SEQRES 26 A 416 PHE MET CYS ALA HIS VAL ALA HIS ARG ASP PRO ARG VAL SEQRES 27 A 416 PHE ALA ASP ALA ASP ARG PHE ASP ILE THR VAL LYS ARG SEQRES 28 A 416 GLU ALA PRO SER ILE ALA PHE GLY GLY GLY PRO HIS PHE SEQRES 29 A 416 CYS LEU GLY THR ALA LEU ALA ARG LEU GLU LEU THR GLU SEQRES 30 A 416 ALA VAL ALA ALA LEU ALA THR ARG LEU ASP PRO PRO GLN SEQRES 31 A 416 ILE ALA GLY GLU ILE THR TRP ARG HIS GLU LEU GLY VAL SEQRES 32 A 416 ALA GLY PRO ASP ALA LEU PRO LEU ARG PHE GLY ALA ALA HET HEM A 501 43 HET P3Z A 502 19 HET GOL A 407 6 HET GOL A 408 6 HET CL A 409 1 HET CL A 410 1 HET CL A 411 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM P3Z (S)-CYCLOPROPYL(4-METHOXYPHENYL)PYRIMIDIN-5-YLMETHANOL HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 P3Z C15 H16 N2 O2 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 CL 3(CL 1-) FORMUL 9 HOH *137(H2 O) HELIX 1 1 ASN A 0 HIS A 6 1 7 HELIX 2 2 THR A 7 ALA A 12 5 6 HELIX 3 3 SER A 28 SER A 38 1 11 HELIX 4 4 ARG A 51 ASP A 61 1 11 HELIX 5 5 GLY A 67 GLY A 76 1 10 HELIX 6 6 GLY A 80 PHE A 89 1 10 HELIX 7 7 LEU A 90 LEU A 93 5 4 HELIX 8 8 GLY A 95 LEU A 104 1 10 HELIX 9 9 THR A 106 PHE A 109 5 4 HELIX 10 10 THR A 110 LYS A 131 1 22 HELIX 11 11 PHE A 139 PHE A 143 1 5 HELIX 12 12 HIS A 145 GLY A 157 1 13 HELIX 13 13 PRO A 159 GLU A 161 5 3 HELIX 14 14 ASP A 162 GLU A 172 1 11 HELIX 15 15 THR A 173 ALA A 178 5 6 HELIX 16 16 ASP A 182 LYS A 208 1 27 HELIX 17 17 ASP A 214 ASP A 225 1 12 HELIX 18 18 ASP A 229 HIS A 262 1 34 HELIX 19 19 HIS A 262 ASN A 272 1 11 HELIX 20 20 LEU A 275 SER A 287 1 13 HELIX 21 21 ALA A 319 HIS A 323 1 5 HELIX 22 22 GLY A 357 LEU A 376 1 20 SHEET 1 A 5 ILE A 40 ARG A 42 0 SHEET 2 A 5 LEU A 47 VAL A 49 -1 O LEU A 48 N ALA A 41 SHEET 3 A 5 PRO A 314 CYS A 318 1 O PHE A 316 N LEU A 47 SHEET 4 A 5 VAL A 292 ALA A 298 -1 N ARG A 296 O VAL A 315 SHEET 5 A 5 LEU A 64 ILE A 65 -1 N ILE A 65 O VAL A 297 SHEET 1 B 3 PHE A 137 ASP A 138 0 SHEET 2 B 3 PRO A 400 PHE A 403 -1 O LEU A 401 N PHE A 137 SHEET 3 B 3 PRO A 379 ILE A 381 -1 N GLN A 380 O ARG A 402 SHEET 1 C 2 PHE A 302 VAL A 304 0 SHEET 2 C 2 VAL A 307 ILE A 309 -1 O ILE A 309 N PHE A 302 LINK SG CYS A 355 FE HEM A 501 1555 1555 2.42 LINK FE HEM A 501 NAM P3Z A 502 1555 1555 2.40 SITE 1 AC1 25 LEU A 90 GLN A 91 HIS A 98 ARG A 102 SITE 2 AC1 25 PHE A 109 MET A 152 ALA A 243 GLY A 244 SITE 3 AC1 25 THR A 247 THR A 248 THR A 289 LEU A 290 SITE 4 AC1 25 THR A 293 ALA A 294 ARG A 296 ALA A 347 SITE 5 AC1 25 PHE A 348 GLY A 349 GLY A 350 HIS A 353 SITE 6 AC1 25 CYS A 355 GLY A 357 ALA A 361 HOH A 412 SITE 7 AC1 25 P3Z A 502 SITE 1 AC2 8 PHE A 89 GLN A 91 ALA A 243 THR A 247 SITE 2 AC2 8 VAL A 292 THR A 293 HEM A 501 HOH A 534 SITE 1 AC3 5 ARG A 51 GLU A 54 ARG A 327 HOH A 423 SITE 2 AC3 5 HOH A 512 SITE 1 AC4 9 LEU A 58 ALA A 59 ARG A 60 ASP A 61 SITE 2 AC4 9 LYS A 62 LEU A 64 ARG A 296 HIS A 353 SITE 3 AC4 9 HOH A 550 SITE 1 AC5 2 ARG A 51 HOH A 542 SITE 1 AC6 4 ARG A 35 GLU A 36 PRO A 326 ARG A 327 SITE 1 AC7 2 ALA A 330 ARG A 341 CRYST1 129.370 129.370 71.070 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007730 0.004463 0.000000 0.00000 SCALE2 0.000000 0.008926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014071 0.00000