data_3P43 # _entry.id 3P43 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3P43 pdb_00003p43 10.2210/pdb3p43/pdb RCSB RCSB061930 ? ? WWPDB D_1000061930 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3P43 _pdbx_database_status.recvd_initial_deposition_date 2010-10-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Smith, P.' 1 'Nair, P.A.' 2 'Das, U.' 3 'Shuman, S.' 4 # _citation.id primary _citation.title ;Structures and activities of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 39 _citation.page_first 3310 _citation.page_last 3320 _citation.year 2011 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21208981 _citation.pdbx_database_id_DOI 10.1093/nar/gkq1163 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Smith, P.' 1 ? primary 'Nair, P.A.' 2 ? primary 'Das, U.' 3 ? primary 'Zhu, H.' 4 ? primary 'Shuman, S.' 5 ? # _cell.entry_id 3P43 _cell.length_a 30.368 _cell.length_b 60.166 _cell.length_c 76.471 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3P43 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative uncharacterized protein' 17575.104 1 ? ? ? ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 5 water nat water 18.015 92 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMLEEYEKKRHFQKTPEPSTTGVKKSSDKPIFVVQRHDARKLHYDFRLEMDGVLKSWAVPKEPPKDAGTRRLAIETEDHP LAYADFEGEIPAGEYGAGKVEIWDRGTFELLKREEREIVVSLEGKELKGIYVLIRTKYGKGEKGWLFFKKAS ; _entity_poly.pdbx_seq_one_letter_code_can ;SMLEEYEKKRHFQKTPEPSTTGVKKSSDKPIFVVQRHDARKLHYDFRLEMDGVLKSWAVPKEPPKDAGTRRLAIETEDHP LAYADFEGEIPAGEYGAGKVEIWDRGTFELLKREEREIVVSLEGKELKGIYVLIRTKYGKGEKGWLFFKKAS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 LEU n 1 4 GLU n 1 5 GLU n 1 6 TYR n 1 7 GLU n 1 8 LYS n 1 9 LYS n 1 10 ARG n 1 11 HIS n 1 12 PHE n 1 13 GLN n 1 14 LYS n 1 15 THR n 1 16 PRO n 1 17 GLU n 1 18 PRO n 1 19 SER n 1 20 THR n 1 21 THR n 1 22 GLY n 1 23 VAL n 1 24 LYS n 1 25 LYS n 1 26 SER n 1 27 SER n 1 28 ASP n 1 29 LYS n 1 30 PRO n 1 31 ILE n 1 32 PHE n 1 33 VAL n 1 34 VAL n 1 35 GLN n 1 36 ARG n 1 37 HIS n 1 38 ASP n 1 39 ALA n 1 40 ARG n 1 41 LYS n 1 42 LEU n 1 43 HIS n 1 44 TYR n 1 45 ASP n 1 46 PHE n 1 47 ARG n 1 48 LEU n 1 49 GLU n 1 50 MET n 1 51 ASP n 1 52 GLY n 1 53 VAL n 1 54 LEU n 1 55 LYS n 1 56 SER n 1 57 TRP n 1 58 ALA n 1 59 VAL n 1 60 PRO n 1 61 LYS n 1 62 GLU n 1 63 PRO n 1 64 PRO n 1 65 LYS n 1 66 ASP n 1 67 ALA n 1 68 GLY n 1 69 THR n 1 70 ARG n 1 71 ARG n 1 72 LEU n 1 73 ALA n 1 74 ILE n 1 75 GLU n 1 76 THR n 1 77 GLU n 1 78 ASP n 1 79 HIS n 1 80 PRO n 1 81 LEU n 1 82 ALA n 1 83 TYR n 1 84 ALA n 1 85 ASP n 1 86 PHE n 1 87 GLU n 1 88 GLY n 1 89 GLU n 1 90 ILE n 1 91 PRO n 1 92 ALA n 1 93 GLY n 1 94 GLU n 1 95 TYR n 1 96 GLY n 1 97 ALA n 1 98 GLY n 1 99 LYS n 1 100 VAL n 1 101 GLU n 1 102 ILE n 1 103 TRP n 1 104 ASP n 1 105 ARG n 1 106 GLY n 1 107 THR n 1 108 PHE n 1 109 GLU n 1 110 LEU n 1 111 LEU n 1 112 LYS n 1 113 ARG n 1 114 GLU n 1 115 GLU n 1 116 ARG n 1 117 GLU n 1 118 ILE n 1 119 VAL n 1 120 VAL n 1 121 SER n 1 122 LEU n 1 123 GLU n 1 124 GLY n 1 125 LYS n 1 126 GLU n 1 127 LEU n 1 128 LYS n 1 129 GLY n 1 130 ILE n 1 131 TYR n 1 132 VAL n 1 133 LEU n 1 134 ILE n 1 135 ARG n 1 136 THR n 1 137 LYS n 1 138 TYR n 1 139 GLY n 1 140 LYS n 1 141 GLY n 1 142 GLU n 1 143 LYS n 1 144 GLY n 1 145 TRP n 1 146 LEU n 1 147 PHE n 1 148 PHE n 1 149 LYS n 1 150 LYS n 1 151 ALA n 1 152 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Mbar_A2115 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Fusaro / DSM 804' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanosarcina barkeri str. Fusaro' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269797 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b-Smt3-His10 _entity_src_gen.plasmid_details 'Codon optimized synthetic gene' _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q46AP6_METBF _struct_ref.pdbx_db_accession Q46AP6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLEEYEKKRHFQKTPEPSTTGVKKSSDKPIFVVQRHDARKLHYDFRLEMDGVLKSWAVPKEPPKDAGTRRLAIETEDHPL AYADFEGEIPAGEYGAGKVEIWDRGTFELLKREEREIVVSLEGKELKGIYVLIRTKYGKGEKGWLFFKKAS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3P43 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 152 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q46AP6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 151 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 151 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3P43 _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q46AP6 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3P43 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.99 _exptl_crystal.density_percent_sol 38.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;vapor-diffusion, sitting-drop setups with 1:1 mixtures of protein solution containing 0.5 mM Mba and 2mM MnCl2 and reservoir solution containing PEG 4000 (32%), 0.18 M MgCl2, 2.5% 1,4-dioxane, 0.1 M Tris-HCl pH 7.5, temperature 298K, VAPOR DIFFUSION, SITTING DROP ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 130 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-06-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double silicon(111) crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1 # _reflns.entry_id 3P43 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 38.236 _reflns.d_resolution_high 2.1 _reflns.number_obs 8606 _reflns.number_all 8827 _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.122 _reflns.pdbx_netI_over_sigmaI 11.12 _reflns.B_iso_Wilson_estimate 20.6 _reflns.pdbx_redundancy 4.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 97.2 _reflns_shell.Rmerge_I_obs 0.465 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.74 _reflns_shell.pdbx_redundancy 3.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs 843 _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3P43 _refine.ls_number_reflns_obs 8458 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.236 _refine.ls_d_res_high 2.100 _refine.ls_percent_reflns_obs 97.52 _refine.ls_R_factor_obs 0.2086 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2029 _refine.ls_R_factor_R_free 0.2572 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.01 _refine.ls_number_reflns_R_free 847 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 23.1 _refine.aniso_B[1][1] -3.9711 _refine.aniso_B[2][2] -5.1005 _refine.aniso_B[3][3] 9.0717 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.347 _refine.solvent_model_param_bsol 37.534 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3N9B' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.26 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error 23.73 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1004 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 1103 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 38.236 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 1045 'X-RAY DIFFRACTION' ? f_angle_d 0.950 ? ? 1408 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.322 ? ? 399 'X-RAY DIFFRACTION' ? f_chiral_restr 0.066 ? ? 144 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 180 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.1000 2.2316 1241 0.2417 97.00 0.2883 . . 137 . . 1241 . 'X-RAY DIFFRACTION' . 2.2316 2.4038 1236 0.2323 97.00 0.2825 . . 138 . . 1236 . 'X-RAY DIFFRACTION' . 2.4038 2.6457 1224 0.2301 96.00 0.3022 . . 136 . . 1224 . 'X-RAY DIFFRACTION' . 2.6457 3.0284 1258 0.2268 97.00 0.2765 . . 139 . . 1258 . 'X-RAY DIFFRACTION' . 3.0284 3.8149 1280 0.1886 99.00 0.2336 . . 144 . . 1280 . 'X-RAY DIFFRACTION' . 3.8149 38.2418 1372 0.1732 99.00 0.2335 . . 153 . . 1372 . 'X-RAY DIFFRACTION' # _struct.entry_id 3P43 _struct.title ;Structure and Activities of Archaeal Members of the LigD 3' Phosphoesterase DNA Repair Enzyme Superfamily ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3P43 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Phosphoesterase, Metalloenzyme, Hydrolase, Manganese, Beta Barrel' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 82 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id PHE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 86 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 81 _struct_conf.end_auth_comp_id PHE _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 85 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 37 ND1 ? ? ? 1_555 B MN . MN ? ? A HIS 36 A MN 152 1_555 ? ? ? ? ? ? ? 2.400 ? ? metalc2 metalc ? ? A HIS 43 NE2 ? ? ? 1_555 B MN . MN ? ? A HIS 42 A MN 152 1_555 ? ? ? ? ? ? ? 2.257 ? ? metalc3 metalc ? ? A ASP 45 OD2 ? ? ? 1_555 B MN . MN ? ? A ASP 44 A MN 152 1_555 ? ? ? ? ? ? ? 2.232 ? ? metalc4 metalc ? ? A ASP 45 OD1 ? ? ? 1_555 B MN . MN ? ? A ASP 44 A MN 152 1_555 ? ? ? ? ? ? ? 2.671 ? ? metalc5 metalc ? ? B MN . MN ? ? ? 1_555 D PO4 . O3 ? ? A MN 152 A PO4 201 1_555 ? ? ? ? ? ? ? 2.716 ? ? metalc6 metalc ? ? B MN . MN ? ? ? 1_555 D PO4 . O1 ? ? A MN 152 A PO4 201 1_555 ? ? ? ? ? ? ? 2.740 ? ? metalc7 metalc ? ? B MN . MN ? ? ? 1_555 D PO4 . O2 ? ? A MN 152 A PO4 201 1_555 ? ? ? ? ? ? ? 2.789 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 79 ? PRO A 80 ? HIS A 78 PRO A 79 A 2 VAL A 53 ? VAL A 59 ? VAL A 52 VAL A 58 A 3 LEU A 42 ? MET A 50 ? LEU A 41 MET A 49 A 4 ILE A 31 ? ASP A 38 ? ILE A 30 ASP A 37 A 5 GLY A 98 ? GLU A 114 ? GLY A 97 GLU A 113 A 6 GLY A 88 ? ILE A 90 ? GLY A 87 ILE A 89 B 1 HIS A 79 ? PRO A 80 ? HIS A 78 PRO A 79 B 2 VAL A 53 ? VAL A 59 ? VAL A 52 VAL A 58 B 3 ARG A 70 ? GLU A 75 ? ARG A 69 GLU A 74 B 4 TRP A 145 ? LYS A 149 ? TRP A 144 LYS A 148 B 5 LYS A 128 ? ARG A 135 ? LYS A 127 ARG A 134 B 6 GLU A 117 ? GLU A 123 ? GLU A 116 GLU A 122 B 7 GLY A 98 ? GLU A 114 ? GLY A 97 GLU A 113 B 8 GLY A 88 ? ILE A 90 ? GLY A 87 ILE A 89 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O HIS A 79 ? O HIS A 78 N LEU A 54 ? N LEU A 53 A 2 3 O VAL A 59 ? O VAL A 58 N TYR A 44 ? N TYR A 43 A 3 4 O ASP A 45 ? O ASP A 44 N GLN A 35 ? N GLN A 34 A 4 5 N ASP A 38 ? N ASP A 37 O LYS A 99 ? O LYS A 98 A 5 6 O VAL A 100 ? O VAL A 99 N GLY A 88 ? N GLY A 87 B 1 2 O HIS A 79 ? O HIS A 78 N LEU A 54 ? N LEU A 53 B 2 3 N ALA A 58 ? N ALA A 57 O ILE A 74 ? O ILE A 73 B 3 4 N ARG A 71 ? N ARG A 70 O PHE A 147 ? O PHE A 146 B 4 5 O LEU A 146 ? O LEU A 145 N ILE A 134 ? N ILE A 133 B 5 6 O LEU A 133 ? O LEU A 132 N ILE A 118 ? N ILE A 117 B 6 7 O SER A 121 ? O SER A 120 N GLU A 109 ? N GLU A 108 B 7 8 O VAL A 100 ? O VAL A 99 N GLY A 88 ? N GLY A 87 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 152 ? 4 'BINDING SITE FOR RESIDUE MN A 152' AC2 Software A CL 153 ? 1 'BINDING SITE FOR RESIDUE CL A 153' AC3 Software A PO4 201 ? 7 'BINDING SITE FOR RESIDUE PO4 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 37 ? HIS A 36 . ? 1_555 ? 2 AC1 4 HIS A 43 ? HIS A 42 . ? 1_555 ? 3 AC1 4 ASP A 45 ? ASP A 44 . ? 1_555 ? 4 AC1 4 PO4 D . ? PO4 A 201 . ? 1_555 ? 5 AC2 1 LEU A 72 ? LEU A 71 . ? 1_555 ? 6 AC3 7 HIS A 37 ? HIS A 36 . ? 1_555 ? 7 AC3 7 HIS A 43 ? HIS A 42 . ? 1_555 ? 8 AC3 7 ASP A 45 ? ASP A 44 . ? 1_555 ? 9 AC3 7 THR A 76 ? THR A 75 . ? 1_555 ? 10 AC3 7 TYR A 95 ? TYR A 94 . ? 1_555 ? 11 AC3 7 MN B . ? MN A 152 . ? 1_555 ? 12 AC3 7 HOH E . ? HOH A 245 . ? 1_555 ? # _database_PDB_matrix.entry_id 3P43 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3P43 _atom_sites.fract_transf_matrix[1][1] 0.032929 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016621 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013077 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 0 ? ? ? A . n A 1 2 MET 2 1 ? ? ? A . n A 1 3 LEU 3 2 ? ? ? A . n A 1 4 GLU 4 3 ? ? ? A . n A 1 5 GLU 5 4 ? ? ? A . n A 1 6 TYR 6 5 ? ? ? A . n A 1 7 GLU 7 6 ? ? ? A . n A 1 8 LYS 8 7 ? ? ? A . n A 1 9 LYS 9 8 ? ? ? A . n A 1 10 ARG 10 9 ? ? ? A . n A 1 11 HIS 11 10 ? ? ? A . n A 1 12 PHE 12 11 ? ? ? A . n A 1 13 GLN 13 12 ? ? ? A . n A 1 14 LYS 14 13 ? ? ? A . n A 1 15 THR 15 14 ? ? ? A . n A 1 16 PRO 16 15 ? ? ? A . n A 1 17 GLU 17 16 ? ? ? A . n A 1 18 PRO 18 17 ? ? ? A . n A 1 19 SER 19 18 ? ? ? A . n A 1 20 THR 20 19 ? ? ? A . n A 1 21 THR 21 20 ? ? ? A . n A 1 22 GLY 22 21 ? ? ? A . n A 1 23 VAL 23 22 ? ? ? A . n A 1 24 LYS 24 23 ? ? ? A . n A 1 25 LYS 25 24 ? ? ? A . n A 1 26 SER 26 25 ? ? ? A . n A 1 27 SER 27 26 ? ? ? A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 PRO 30 29 29 PRO PRO A . n A 1 31 ILE 31 30 30 ILE ILE A . n A 1 32 PHE 32 31 31 PHE PHE A . n A 1 33 VAL 33 32 32 VAL VAL A . n A 1 34 VAL 34 33 33 VAL VAL A . n A 1 35 GLN 35 34 34 GLN GLN A . n A 1 36 ARG 36 35 35 ARG ARG A . n A 1 37 HIS 37 36 36 HIS HIS A . n A 1 38 ASP 38 37 37 ASP ASP A . n A 1 39 ALA 39 38 38 ALA ALA A . n A 1 40 ARG 40 39 39 ARG ARG A . n A 1 41 LYS 41 40 40 LYS LYS A . n A 1 42 LEU 42 41 41 LEU LEU A . n A 1 43 HIS 43 42 42 HIS HIS A . n A 1 44 TYR 44 43 43 TYR TYR A . n A 1 45 ASP 45 44 44 ASP ASP A . n A 1 46 PHE 46 45 45 PHE PHE A . n A 1 47 ARG 47 46 46 ARG ARG A . n A 1 48 LEU 48 47 47 LEU LEU A . n A 1 49 GLU 49 48 48 GLU GLU A . n A 1 50 MET 50 49 49 MET MET A . n A 1 51 ASP 51 50 50 ASP ASP A . n A 1 52 GLY 52 51 51 GLY GLY A . n A 1 53 VAL 53 52 52 VAL VAL A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 LYS 55 54 54 LYS LYS A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 TRP 57 56 56 TRP TRP A . n A 1 58 ALA 58 57 57 ALA ALA A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 PRO 60 59 59 PRO PRO A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 PRO 63 62 62 PRO PRO A . n A 1 64 PRO 64 63 63 PRO PRO A . n A 1 65 LYS 65 64 64 LYS LYS A . n A 1 66 ASP 66 65 65 ASP ASP A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 THR 69 68 68 THR THR A . n A 1 70 ARG 70 69 69 ARG ARG A . n A 1 71 ARG 71 70 70 ARG ARG A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 ALA 73 72 72 ALA ALA A . n A 1 74 ILE 74 73 73 ILE ILE A . n A 1 75 GLU 75 74 74 GLU GLU A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 ASP 78 77 77 ASP ASP A . n A 1 79 HIS 79 78 78 HIS HIS A . n A 1 80 PRO 80 79 79 PRO PRO A . n A 1 81 LEU 81 80 80 LEU LEU A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 TYR 83 82 82 TYR TYR A . n A 1 84 ALA 84 83 83 ALA ALA A . n A 1 85 ASP 85 84 84 ASP ASP A . n A 1 86 PHE 86 85 85 PHE PHE A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 GLY 88 87 87 GLY GLY A . n A 1 89 GLU 89 88 88 GLU GLU A . n A 1 90 ILE 90 89 89 ILE ILE A . n A 1 91 PRO 91 90 90 PRO PRO A . n A 1 92 ALA 92 91 91 ALA ALA A . n A 1 93 GLY 93 92 92 GLY GLY A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 TYR 95 94 94 TYR TYR A . n A 1 96 GLY 96 95 95 GLY GLY A . n A 1 97 ALA 97 96 96 ALA ALA A . n A 1 98 GLY 98 97 97 GLY GLY A . n A 1 99 LYS 99 98 98 LYS LYS A . n A 1 100 VAL 100 99 99 VAL VAL A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 ILE 102 101 101 ILE ILE A . n A 1 103 TRP 103 102 102 TRP TRP A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 ARG 105 104 104 ARG ARG A . n A 1 106 GLY 106 105 105 GLY GLY A . n A 1 107 THR 107 106 106 THR THR A . n A 1 108 PHE 108 107 107 PHE PHE A . n A 1 109 GLU 109 108 108 GLU GLU A . n A 1 110 LEU 110 109 109 LEU LEU A . n A 1 111 LEU 111 110 110 LEU LEU A . n A 1 112 LYS 112 111 111 LYS LYS A . n A 1 113 ARG 113 112 112 ARG ARG A . n A 1 114 GLU 114 113 113 GLU GLU A . n A 1 115 GLU 115 114 114 GLU GLU A . n A 1 116 ARG 116 115 115 ARG ARG A . n A 1 117 GLU 117 116 116 GLU GLU A . n A 1 118 ILE 118 117 117 ILE ILE A . n A 1 119 VAL 119 118 118 VAL VAL A . n A 1 120 VAL 120 119 119 VAL VAL A . n A 1 121 SER 121 120 120 SER SER A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 GLU 123 122 122 GLU GLU A . n A 1 124 GLY 124 123 123 GLY GLY A . n A 1 125 LYS 125 124 124 LYS LYS A . n A 1 126 GLU 126 125 125 GLU GLU A . n A 1 127 LEU 127 126 126 LEU LEU A . n A 1 128 LYS 128 127 127 LYS LYS A . n A 1 129 GLY 129 128 128 GLY GLY A . n A 1 130 ILE 130 129 129 ILE ILE A . n A 1 131 TYR 131 130 130 TYR TYR A . n A 1 132 VAL 132 131 131 VAL VAL A . n A 1 133 LEU 133 132 132 LEU LEU A . n A 1 134 ILE 134 133 133 ILE ILE A . n A 1 135 ARG 135 134 134 ARG ARG A . n A 1 136 THR 136 135 135 THR THR A . n A 1 137 LYS 137 136 136 LYS LYS A . n A 1 138 TYR 138 137 137 TYR TYR A . n A 1 139 GLY 139 138 138 GLY GLY A . n A 1 140 LYS 140 139 ? ? ? A . n A 1 141 GLY 141 140 140 GLY GLY A . n A 1 142 GLU 142 141 141 GLU GLU A . n A 1 143 LYS 143 142 142 LYS LYS A . n A 1 144 GLY 144 143 143 GLY GLY A . n A 1 145 TRP 145 144 144 TRP TRP A . n A 1 146 LEU 146 145 145 LEU LEU A . n A 1 147 PHE 147 146 146 PHE PHE A . n A 1 148 PHE 148 147 147 PHE PHE A . n A 1 149 LYS 149 148 148 LYS LYS A . n A 1 150 LYS 150 149 149 LYS LYS A . n A 1 151 ALA 151 150 150 ALA ALA A . n A 1 152 SER 152 151 151 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN 1 152 1 MN MN A . C 3 CL 1 153 1 CL CL A . D 4 PO4 1 201 201 PO4 PO4 A . E 5 HOH 1 154 1 HOH HOH A . E 5 HOH 2 155 2 HOH HOH A . E 5 HOH 3 156 3 HOH HOH A . E 5 HOH 4 157 4 HOH HOH A . E 5 HOH 5 158 6 HOH HOH A . E 5 HOH 6 159 7 HOH HOH A . E 5 HOH 7 160 8 HOH HOH A . E 5 HOH 8 161 9 HOH HOH A . E 5 HOH 9 162 10 HOH HOH A . E 5 HOH 10 163 11 HOH HOH A . E 5 HOH 11 164 12 HOH HOH A . E 5 HOH 12 165 13 HOH HOH A . E 5 HOH 13 166 14 HOH HOH A . E 5 HOH 14 167 15 HOH HOH A . E 5 HOH 15 168 16 HOH HOH A . E 5 HOH 16 169 17 HOH HOH A . E 5 HOH 17 170 18 HOH HOH A . E 5 HOH 18 171 19 HOH HOH A . E 5 HOH 19 172 20 HOH HOH A . E 5 HOH 20 173 21 HOH HOH A . E 5 HOH 21 174 23 HOH HOH A . E 5 HOH 22 175 24 HOH HOH A . E 5 HOH 23 176 25 HOH HOH A . E 5 HOH 24 177 26 HOH HOH A . E 5 HOH 25 178 27 HOH HOH A . E 5 HOH 26 179 28 HOH HOH A . E 5 HOH 27 180 29 HOH HOH A . E 5 HOH 28 181 30 HOH HOH A . E 5 HOH 29 182 31 HOH HOH A . E 5 HOH 30 183 32 HOH HOH A . E 5 HOH 31 184 33 HOH HOH A . E 5 HOH 32 185 34 HOH HOH A . E 5 HOH 33 186 35 HOH HOH A . E 5 HOH 34 187 36 HOH HOH A . E 5 HOH 35 188 37 HOH HOH A . E 5 HOH 36 189 39 HOH HOH A . E 5 HOH 37 190 40 HOH HOH A . E 5 HOH 38 191 41 HOH HOH A . E 5 HOH 39 192 42 HOH HOH A . E 5 HOH 40 193 44 HOH HOH A . E 5 HOH 41 194 45 HOH HOH A . E 5 HOH 42 195 46 HOH HOH A . E 5 HOH 43 196 47 HOH HOH A . E 5 HOH 44 197 48 HOH HOH A . E 5 HOH 45 198 49 HOH HOH A . E 5 HOH 46 199 50 HOH HOH A . E 5 HOH 47 200 51 HOH HOH A . E 5 HOH 48 202 52 HOH HOH A . E 5 HOH 49 203 53 HOH HOH A . E 5 HOH 50 204 54 HOH HOH A . E 5 HOH 51 205 55 HOH HOH A . E 5 HOH 52 206 56 HOH HOH A . E 5 HOH 53 207 57 HOH HOH A . E 5 HOH 54 208 58 HOH HOH A . E 5 HOH 55 209 59 HOH HOH A . E 5 HOH 56 210 60 HOH HOH A . E 5 HOH 57 211 61 HOH HOH A . E 5 HOH 58 212 62 HOH HOH A . E 5 HOH 59 213 63 HOH HOH A . E 5 HOH 60 214 64 HOH HOH A . E 5 HOH 61 215 65 HOH HOH A . E 5 HOH 62 216 66 HOH HOH A . E 5 HOH 63 217 67 HOH HOH A . E 5 HOH 64 218 68 HOH HOH A . E 5 HOH 65 219 69 HOH HOH A . E 5 HOH 66 220 70 HOH HOH A . E 5 HOH 67 221 71 HOH HOH A . E 5 HOH 68 222 72 HOH HOH A . E 5 HOH 69 223 73 HOH HOH A . E 5 HOH 70 224 74 HOH HOH A . E 5 HOH 71 225 75 HOH HOH A . E 5 HOH 72 226 76 HOH HOH A . E 5 HOH 73 227 77 HOH HOH A . E 5 HOH 74 228 78 HOH HOH A . E 5 HOH 75 229 79 HOH HOH A . E 5 HOH 76 230 80 HOH HOH A . E 5 HOH 77 231 81 HOH HOH A . E 5 HOH 78 232 82 HOH HOH A . E 5 HOH 79 233 83 HOH HOH A . E 5 HOH 80 234 84 HOH HOH A . E 5 HOH 81 235 86 HOH HOH A . E 5 HOH 82 236 87 HOH HOH A . E 5 HOH 83 237 92 HOH HOH A . E 5 HOH 84 238 93 HOH HOH A . E 5 HOH 85 239 94 HOH HOH A . E 5 HOH 86 240 95 HOH HOH A . E 5 HOH 87 241 96 HOH HOH A . E 5 HOH 88 242 98 HOH HOH A . E 5 HOH 89 243 99 HOH HOH A . E 5 HOH 90 244 100 HOH HOH A . E 5 HOH 91 245 101 HOH HOH A . E 5 HOH 92 246 102 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 37 ? A HIS 36 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 NE2 ? A HIS 43 ? A HIS 42 ? 1_555 92.5 ? 2 ND1 ? A HIS 37 ? A HIS 36 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 OD2 ? A ASP 45 ? A ASP 44 ? 1_555 89.8 ? 3 NE2 ? A HIS 43 ? A HIS 42 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 OD2 ? A ASP 45 ? A ASP 44 ? 1_555 102.0 ? 4 ND1 ? A HIS 37 ? A HIS 36 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 OD1 ? A ASP 45 ? A ASP 44 ? 1_555 141.6 ? 5 NE2 ? A HIS 43 ? A HIS 42 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 OD1 ? A ASP 45 ? A ASP 44 ? 1_555 92.0 ? 6 OD2 ? A ASP 45 ? A ASP 44 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 OD1 ? A ASP 45 ? A ASP 44 ? 1_555 52.0 ? 7 ND1 ? A HIS 37 ? A HIS 36 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O3 ? D PO4 . ? A PO4 201 ? 1_555 140.5 ? 8 NE2 ? A HIS 43 ? A HIS 42 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O3 ? D PO4 . ? A PO4 201 ? 1_555 101.7 ? 9 OD2 ? A ASP 45 ? A ASP 44 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O3 ? D PO4 . ? A PO4 201 ? 1_555 122.0 ? 10 OD1 ? A ASP 45 ? A ASP 44 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O3 ? D PO4 . ? A PO4 201 ? 1_555 75.1 ? 11 ND1 ? A HIS 37 ? A HIS 36 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O1 ? D PO4 . ? A PO4 201 ? 1_555 94.2 ? 12 NE2 ? A HIS 43 ? A HIS 42 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O1 ? D PO4 . ? A PO4 201 ? 1_555 143.3 ? 13 OD2 ? A ASP 45 ? A ASP 44 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O1 ? D PO4 . ? A PO4 201 ? 1_555 114.0 ? 14 OD1 ? A ASP 45 ? A ASP 44 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O1 ? D PO4 . ? A PO4 201 ? 1_555 104.4 ? 15 O3 ? D PO4 . ? A PO4 201 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O1 ? D PO4 . ? A PO4 201 ? 1_555 53.5 ? 16 ND1 ? A HIS 37 ? A HIS 36 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O2 ? D PO4 . ? A PO4 201 ? 1_555 90.4 ? 17 NE2 ? A HIS 43 ? A HIS 42 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O2 ? D PO4 . ? A PO4 201 ? 1_555 90.9 ? 18 OD2 ? A ASP 45 ? A ASP 44 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O2 ? D PO4 . ? A PO4 201 ? 1_555 167.1 ? 19 OD1 ? A ASP 45 ? A ASP 44 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O2 ? D PO4 . ? A PO4 201 ? 1_555 127.6 ? 20 O3 ? D PO4 . ? A PO4 201 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O2 ? D PO4 . ? A PO4 201 ? 1_555 53.2 ? 21 O1 ? D PO4 . ? A PO4 201 ? 1_555 MN ? B MN . ? A MN 152 ? 1_555 O2 ? D PO4 . ? A PO4 201 ? 1_555 53.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-01-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.value' 14 3 'Structure model' '_struct_conn.pdbx_dist_value' 15 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 18 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 20 3 'Structure model' '_struct_ref_seq_dif.details' 21 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SOLVE phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.4_486)' ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 28 ? ? -170.91 -54.55 2 1 ALA A 38 ? ? -117.87 -129.03 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 27 ? N ? A ASP 28 N 2 1 Y 1 A ASP 27 ? CG ? A ASP 28 CG 3 1 Y 1 A ASP 27 ? OD1 ? A ASP 28 OD1 4 1 Y 1 A ASP 27 ? OD2 ? A ASP 28 OD2 5 1 Y 1 A GLU 141 ? CG ? A GLU 142 CG 6 1 Y 1 A GLU 141 ? CD ? A GLU 142 CD 7 1 Y 1 A GLU 141 ? OE1 ? A GLU 142 OE1 8 1 Y 1 A GLU 141 ? OE2 ? A GLU 142 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 0 ? A SER 1 2 1 Y 1 A MET 1 ? A MET 2 3 1 Y 1 A LEU 2 ? A LEU 3 4 1 Y 1 A GLU 3 ? A GLU 4 5 1 Y 1 A GLU 4 ? A GLU 5 6 1 Y 1 A TYR 5 ? A TYR 6 7 1 Y 1 A GLU 6 ? A GLU 7 8 1 Y 1 A LYS 7 ? A LYS 8 9 1 Y 1 A LYS 8 ? A LYS 9 10 1 Y 1 A ARG 9 ? A ARG 10 11 1 Y 1 A HIS 10 ? A HIS 11 12 1 Y 1 A PHE 11 ? A PHE 12 13 1 Y 1 A GLN 12 ? A GLN 13 14 1 Y 1 A LYS 13 ? A LYS 14 15 1 Y 1 A THR 14 ? A THR 15 16 1 Y 1 A PRO 15 ? A PRO 16 17 1 Y 1 A GLU 16 ? A GLU 17 18 1 Y 1 A PRO 17 ? A PRO 18 19 1 Y 1 A SER 18 ? A SER 19 20 1 Y 1 A THR 19 ? A THR 20 21 1 Y 1 A THR 20 ? A THR 21 22 1 Y 1 A GLY 21 ? A GLY 22 23 1 Y 1 A VAL 22 ? A VAL 23 24 1 Y 1 A LYS 23 ? A LYS 24 25 1 Y 1 A LYS 24 ? A LYS 25 26 1 Y 1 A SER 25 ? A SER 26 27 1 Y 1 A SER 26 ? A SER 27 28 1 Y 1 A LYS 139 ? A LYS 140 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 CL CL CL N N 57 GLN N N N N 58 GLN CA C N S 59 GLN C C N N 60 GLN O O N N 61 GLN CB C N N 62 GLN CG C N N 63 GLN CD C N N 64 GLN OE1 O N N 65 GLN NE2 N N N 66 GLN OXT O N N 67 GLN H H N N 68 GLN H2 H N N 69 GLN HA H N N 70 GLN HB2 H N N 71 GLN HB3 H N N 72 GLN HG2 H N N 73 GLN HG3 H N N 74 GLN HE21 H N N 75 GLN HE22 H N N 76 GLN HXT H N N 77 GLU N N N N 78 GLU CA C N S 79 GLU C C N N 80 GLU O O N N 81 GLU CB C N N 82 GLU CG C N N 83 GLU CD C N N 84 GLU OE1 O N N 85 GLU OE2 O N N 86 GLU OXT O N N 87 GLU H H N N 88 GLU H2 H N N 89 GLU HA H N N 90 GLU HB2 H N N 91 GLU HB3 H N N 92 GLU HG2 H N N 93 GLU HG3 H N N 94 GLU HE2 H N N 95 GLU HXT H N N 96 GLY N N N N 97 GLY CA C N N 98 GLY C C N N 99 GLY O O N N 100 GLY OXT O N N 101 GLY H H N N 102 GLY H2 H N N 103 GLY HA2 H N N 104 GLY HA3 H N N 105 GLY HXT H N N 106 HIS N N N N 107 HIS CA C N S 108 HIS C C N N 109 HIS O O N N 110 HIS CB C N N 111 HIS CG C Y N 112 HIS ND1 N Y N 113 HIS CD2 C Y N 114 HIS CE1 C Y N 115 HIS NE2 N Y N 116 HIS OXT O N N 117 HIS H H N N 118 HIS H2 H N N 119 HIS HA H N N 120 HIS HB2 H N N 121 HIS HB3 H N N 122 HIS HD1 H N N 123 HIS HD2 H N N 124 HIS HE1 H N N 125 HIS HE2 H N N 126 HIS HXT H N N 127 HOH O O N N 128 HOH H1 H N N 129 HOH H2 H N N 130 ILE N N N N 131 ILE CA C N S 132 ILE C C N N 133 ILE O O N N 134 ILE CB C N S 135 ILE CG1 C N N 136 ILE CG2 C N N 137 ILE CD1 C N N 138 ILE OXT O N N 139 ILE H H N N 140 ILE H2 H N N 141 ILE HA H N N 142 ILE HB H N N 143 ILE HG12 H N N 144 ILE HG13 H N N 145 ILE HG21 H N N 146 ILE HG22 H N N 147 ILE HG23 H N N 148 ILE HD11 H N N 149 ILE HD12 H N N 150 ILE HD13 H N N 151 ILE HXT H N N 152 LEU N N N N 153 LEU CA C N S 154 LEU C C N N 155 LEU O O N N 156 LEU CB C N N 157 LEU CG C N N 158 LEU CD1 C N N 159 LEU CD2 C N N 160 LEU OXT O N N 161 LEU H H N N 162 LEU H2 H N N 163 LEU HA H N N 164 LEU HB2 H N N 165 LEU HB3 H N N 166 LEU HG H N N 167 LEU HD11 H N N 168 LEU HD12 H N N 169 LEU HD13 H N N 170 LEU HD21 H N N 171 LEU HD22 H N N 172 LEU HD23 H N N 173 LEU HXT H N N 174 LYS N N N N 175 LYS CA C N S 176 LYS C C N N 177 LYS O O N N 178 LYS CB C N N 179 LYS CG C N N 180 LYS CD C N N 181 LYS CE C N N 182 LYS NZ N N N 183 LYS OXT O N N 184 LYS H H N N 185 LYS H2 H N N 186 LYS HA H N N 187 LYS HB2 H N N 188 LYS HB3 H N N 189 LYS HG2 H N N 190 LYS HG3 H N N 191 LYS HD2 H N N 192 LYS HD3 H N N 193 LYS HE2 H N N 194 LYS HE3 H N N 195 LYS HZ1 H N N 196 LYS HZ2 H N N 197 LYS HZ3 H N N 198 LYS HXT H N N 199 MET N N N N 200 MET CA C N S 201 MET C C N N 202 MET O O N N 203 MET CB C N N 204 MET CG C N N 205 MET SD S N N 206 MET CE C N N 207 MET OXT O N N 208 MET H H N N 209 MET H2 H N N 210 MET HA H N N 211 MET HB2 H N N 212 MET HB3 H N N 213 MET HG2 H N N 214 MET HG3 H N N 215 MET HE1 H N N 216 MET HE2 H N N 217 MET HE3 H N N 218 MET HXT H N N 219 MN MN MN N N 220 PHE N N N N 221 PHE CA C N S 222 PHE C C N N 223 PHE O O N N 224 PHE CB C N N 225 PHE CG C Y N 226 PHE CD1 C Y N 227 PHE CD2 C Y N 228 PHE CE1 C Y N 229 PHE CE2 C Y N 230 PHE CZ C Y N 231 PHE OXT O N N 232 PHE H H N N 233 PHE H2 H N N 234 PHE HA H N N 235 PHE HB2 H N N 236 PHE HB3 H N N 237 PHE HD1 H N N 238 PHE HD2 H N N 239 PHE HE1 H N N 240 PHE HE2 H N N 241 PHE HZ H N N 242 PHE HXT H N N 243 PO4 P P N N 244 PO4 O1 O N N 245 PO4 O2 O N N 246 PO4 O3 O N N 247 PO4 O4 O N N 248 PRO N N N N 249 PRO CA C N S 250 PRO C C N N 251 PRO O O N N 252 PRO CB C N N 253 PRO CG C N N 254 PRO CD C N N 255 PRO OXT O N N 256 PRO H H N N 257 PRO HA H N N 258 PRO HB2 H N N 259 PRO HB3 H N N 260 PRO HG2 H N N 261 PRO HG3 H N N 262 PRO HD2 H N N 263 PRO HD3 H N N 264 PRO HXT H N N 265 SER N N N N 266 SER CA C N S 267 SER C C N N 268 SER O O N N 269 SER CB C N N 270 SER OG O N N 271 SER OXT O N N 272 SER H H N N 273 SER H2 H N N 274 SER HA H N N 275 SER HB2 H N N 276 SER HB3 H N N 277 SER HG H N N 278 SER HXT H N N 279 THR N N N N 280 THR CA C N S 281 THR C C N N 282 THR O O N N 283 THR CB C N R 284 THR OG1 O N N 285 THR CG2 C N N 286 THR OXT O N N 287 THR H H N N 288 THR H2 H N N 289 THR HA H N N 290 THR HB H N N 291 THR HG1 H N N 292 THR HG21 H N N 293 THR HG22 H N N 294 THR HG23 H N N 295 THR HXT H N N 296 TRP N N N N 297 TRP CA C N S 298 TRP C C N N 299 TRP O O N N 300 TRP CB C N N 301 TRP CG C Y N 302 TRP CD1 C Y N 303 TRP CD2 C Y N 304 TRP NE1 N Y N 305 TRP CE2 C Y N 306 TRP CE3 C Y N 307 TRP CZ2 C Y N 308 TRP CZ3 C Y N 309 TRP CH2 C Y N 310 TRP OXT O N N 311 TRP H H N N 312 TRP H2 H N N 313 TRP HA H N N 314 TRP HB2 H N N 315 TRP HB3 H N N 316 TRP HD1 H N N 317 TRP HE1 H N N 318 TRP HE3 H N N 319 TRP HZ2 H N N 320 TRP HZ3 H N N 321 TRP HH2 H N N 322 TRP HXT H N N 323 TYR N N N N 324 TYR CA C N S 325 TYR C C N N 326 TYR O O N N 327 TYR CB C N N 328 TYR CG C Y N 329 TYR CD1 C Y N 330 TYR CD2 C Y N 331 TYR CE1 C Y N 332 TYR CE2 C Y N 333 TYR CZ C Y N 334 TYR OH O N N 335 TYR OXT O N N 336 TYR H H N N 337 TYR H2 H N N 338 TYR HA H N N 339 TYR HB2 H N N 340 TYR HB3 H N N 341 TYR HD1 H N N 342 TYR HD2 H N N 343 TYR HE1 H N N 344 TYR HE2 H N N 345 TYR HH H N N 346 TYR HXT H N N 347 VAL N N N N 348 VAL CA C N S 349 VAL C C N N 350 VAL O O N N 351 VAL CB C N N 352 VAL CG1 C N N 353 VAL CG2 C N N 354 VAL OXT O N N 355 VAL H H N N 356 VAL H2 H N N 357 VAL HA H N N 358 VAL HB H N N 359 VAL HG11 H N N 360 VAL HG12 H N N 361 VAL HG13 H N N 362 VAL HG21 H N N 363 VAL HG22 H N N 364 VAL HG23 H N N 365 VAL HXT H N N 366 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLN N CA sing N N 54 GLN N H sing N N 55 GLN N H2 sing N N 56 GLN CA C sing N N 57 GLN CA CB sing N N 58 GLN CA HA sing N N 59 GLN C O doub N N 60 GLN C OXT sing N N 61 GLN CB CG sing N N 62 GLN CB HB2 sing N N 63 GLN CB HB3 sing N N 64 GLN CG CD sing N N 65 GLN CG HG2 sing N N 66 GLN CG HG3 sing N N 67 GLN CD OE1 doub N N 68 GLN CD NE2 sing N N 69 GLN NE2 HE21 sing N N 70 GLN NE2 HE22 sing N N 71 GLN OXT HXT sing N N 72 GLU N CA sing N N 73 GLU N H sing N N 74 GLU N H2 sing N N 75 GLU CA C sing N N 76 GLU CA CB sing N N 77 GLU CA HA sing N N 78 GLU C O doub N N 79 GLU C OXT sing N N 80 GLU CB CG sing N N 81 GLU CB HB2 sing N N 82 GLU CB HB3 sing N N 83 GLU CG CD sing N N 84 GLU CG HG2 sing N N 85 GLU CG HG3 sing N N 86 GLU CD OE1 doub N N 87 GLU CD OE2 sing N N 88 GLU OE2 HE2 sing N N 89 GLU OXT HXT sing N N 90 GLY N CA sing N N 91 GLY N H sing N N 92 GLY N H2 sing N N 93 GLY CA C sing N N 94 GLY CA HA2 sing N N 95 GLY CA HA3 sing N N 96 GLY C O doub N N 97 GLY C OXT sing N N 98 GLY OXT HXT sing N N 99 HIS N CA sing N N 100 HIS N H sing N N 101 HIS N H2 sing N N 102 HIS CA C sing N N 103 HIS CA CB sing N N 104 HIS CA HA sing N N 105 HIS C O doub N N 106 HIS C OXT sing N N 107 HIS CB CG sing N N 108 HIS CB HB2 sing N N 109 HIS CB HB3 sing N N 110 HIS CG ND1 sing Y N 111 HIS CG CD2 doub Y N 112 HIS ND1 CE1 doub Y N 113 HIS ND1 HD1 sing N N 114 HIS CD2 NE2 sing Y N 115 HIS CD2 HD2 sing N N 116 HIS CE1 NE2 sing Y N 117 HIS CE1 HE1 sing N N 118 HIS NE2 HE2 sing N N 119 HIS OXT HXT sing N N 120 HOH O H1 sing N N 121 HOH O H2 sing N N 122 ILE N CA sing N N 123 ILE N H sing N N 124 ILE N H2 sing N N 125 ILE CA C sing N N 126 ILE CA CB sing N N 127 ILE CA HA sing N N 128 ILE C O doub N N 129 ILE C OXT sing N N 130 ILE CB CG1 sing N N 131 ILE CB CG2 sing N N 132 ILE CB HB sing N N 133 ILE CG1 CD1 sing N N 134 ILE CG1 HG12 sing N N 135 ILE CG1 HG13 sing N N 136 ILE CG2 HG21 sing N N 137 ILE CG2 HG22 sing N N 138 ILE CG2 HG23 sing N N 139 ILE CD1 HD11 sing N N 140 ILE CD1 HD12 sing N N 141 ILE CD1 HD13 sing N N 142 ILE OXT HXT sing N N 143 LEU N CA sing N N 144 LEU N H sing N N 145 LEU N H2 sing N N 146 LEU CA C sing N N 147 LEU CA CB sing N N 148 LEU CA HA sing N N 149 LEU C O doub N N 150 LEU C OXT sing N N 151 LEU CB CG sing N N 152 LEU CB HB2 sing N N 153 LEU CB HB3 sing N N 154 LEU CG CD1 sing N N 155 LEU CG CD2 sing N N 156 LEU CG HG sing N N 157 LEU CD1 HD11 sing N N 158 LEU CD1 HD12 sing N N 159 LEU CD1 HD13 sing N N 160 LEU CD2 HD21 sing N N 161 LEU CD2 HD22 sing N N 162 LEU CD2 HD23 sing N N 163 LEU OXT HXT sing N N 164 LYS N CA sing N N 165 LYS N H sing N N 166 LYS N H2 sing N N 167 LYS CA C sing N N 168 LYS CA CB sing N N 169 LYS CA HA sing N N 170 LYS C O doub N N 171 LYS C OXT sing N N 172 LYS CB CG sing N N 173 LYS CB HB2 sing N N 174 LYS CB HB3 sing N N 175 LYS CG CD sing N N 176 LYS CG HG2 sing N N 177 LYS CG HG3 sing N N 178 LYS CD CE sing N N 179 LYS CD HD2 sing N N 180 LYS CD HD3 sing N N 181 LYS CE NZ sing N N 182 LYS CE HE2 sing N N 183 LYS CE HE3 sing N N 184 LYS NZ HZ1 sing N N 185 LYS NZ HZ2 sing N N 186 LYS NZ HZ3 sing N N 187 LYS OXT HXT sing N N 188 MET N CA sing N N 189 MET N H sing N N 190 MET N H2 sing N N 191 MET CA C sing N N 192 MET CA CB sing N N 193 MET CA HA sing N N 194 MET C O doub N N 195 MET C OXT sing N N 196 MET CB CG sing N N 197 MET CB HB2 sing N N 198 MET CB HB3 sing N N 199 MET CG SD sing N N 200 MET CG HG2 sing N N 201 MET CG HG3 sing N N 202 MET SD CE sing N N 203 MET CE HE1 sing N N 204 MET CE HE2 sing N N 205 MET CE HE3 sing N N 206 MET OXT HXT sing N N 207 PHE N CA sing N N 208 PHE N H sing N N 209 PHE N H2 sing N N 210 PHE CA C sing N N 211 PHE CA CB sing N N 212 PHE CA HA sing N N 213 PHE C O doub N N 214 PHE C OXT sing N N 215 PHE CB CG sing N N 216 PHE CB HB2 sing N N 217 PHE CB HB3 sing N N 218 PHE CG CD1 doub Y N 219 PHE CG CD2 sing Y N 220 PHE CD1 CE1 sing Y N 221 PHE CD1 HD1 sing N N 222 PHE CD2 CE2 doub Y N 223 PHE CD2 HD2 sing N N 224 PHE CE1 CZ doub Y N 225 PHE CE1 HE1 sing N N 226 PHE CE2 CZ sing Y N 227 PHE CE2 HE2 sing N N 228 PHE CZ HZ sing N N 229 PHE OXT HXT sing N N 230 PO4 P O1 doub N N 231 PO4 P O2 sing N N 232 PO4 P O3 sing N N 233 PO4 P O4 sing N N 234 PRO N CA sing N N 235 PRO N CD sing N N 236 PRO N H sing N N 237 PRO CA C sing N N 238 PRO CA CB sing N N 239 PRO CA HA sing N N 240 PRO C O doub N N 241 PRO C OXT sing N N 242 PRO CB CG sing N N 243 PRO CB HB2 sing N N 244 PRO CB HB3 sing N N 245 PRO CG CD sing N N 246 PRO CG HG2 sing N N 247 PRO CG HG3 sing N N 248 PRO CD HD2 sing N N 249 PRO CD HD3 sing N N 250 PRO OXT HXT sing N N 251 SER N CA sing N N 252 SER N H sing N N 253 SER N H2 sing N N 254 SER CA C sing N N 255 SER CA CB sing N N 256 SER CA HA sing N N 257 SER C O doub N N 258 SER C OXT sing N N 259 SER CB OG sing N N 260 SER CB HB2 sing N N 261 SER CB HB3 sing N N 262 SER OG HG sing N N 263 SER OXT HXT sing N N 264 THR N CA sing N N 265 THR N H sing N N 266 THR N H2 sing N N 267 THR CA C sing N N 268 THR CA CB sing N N 269 THR CA HA sing N N 270 THR C O doub N N 271 THR C OXT sing N N 272 THR CB OG1 sing N N 273 THR CB CG2 sing N N 274 THR CB HB sing N N 275 THR OG1 HG1 sing N N 276 THR CG2 HG21 sing N N 277 THR CG2 HG22 sing N N 278 THR CG2 HG23 sing N N 279 THR OXT HXT sing N N 280 TRP N CA sing N N 281 TRP N H sing N N 282 TRP N H2 sing N N 283 TRP CA C sing N N 284 TRP CA CB sing N N 285 TRP CA HA sing N N 286 TRP C O doub N N 287 TRP C OXT sing N N 288 TRP CB CG sing N N 289 TRP CB HB2 sing N N 290 TRP CB HB3 sing N N 291 TRP CG CD1 doub Y N 292 TRP CG CD2 sing Y N 293 TRP CD1 NE1 sing Y N 294 TRP CD1 HD1 sing N N 295 TRP CD2 CE2 doub Y N 296 TRP CD2 CE3 sing Y N 297 TRP NE1 CE2 sing Y N 298 TRP NE1 HE1 sing N N 299 TRP CE2 CZ2 sing Y N 300 TRP CE3 CZ3 doub Y N 301 TRP CE3 HE3 sing N N 302 TRP CZ2 CH2 doub Y N 303 TRP CZ2 HZ2 sing N N 304 TRP CZ3 CH2 sing Y N 305 TRP CZ3 HZ3 sing N N 306 TRP CH2 HH2 sing N N 307 TRP OXT HXT sing N N 308 TYR N CA sing N N 309 TYR N H sing N N 310 TYR N H2 sing N N 311 TYR CA C sing N N 312 TYR CA CB sing N N 313 TYR CA HA sing N N 314 TYR C O doub N N 315 TYR C OXT sing N N 316 TYR CB CG sing N N 317 TYR CB HB2 sing N N 318 TYR CB HB3 sing N N 319 TYR CG CD1 doub Y N 320 TYR CG CD2 sing Y N 321 TYR CD1 CE1 sing Y N 322 TYR CD1 HD1 sing N N 323 TYR CD2 CE2 doub Y N 324 TYR CD2 HD2 sing N N 325 TYR CE1 CZ doub Y N 326 TYR CE1 HE1 sing N N 327 TYR CE2 CZ sing Y N 328 TYR CE2 HE2 sing N N 329 TYR CZ OH sing N N 330 TYR OH HH sing N N 331 TYR OXT HXT sing N N 332 VAL N CA sing N N 333 VAL N H sing N N 334 VAL N H2 sing N N 335 VAL CA C sing N N 336 VAL CA CB sing N N 337 VAL CA HA sing N N 338 VAL C O doub N N 339 VAL C OXT sing N N 340 VAL CB CG1 sing N N 341 VAL CB CG2 sing N N 342 VAL CB HB sing N N 343 VAL CG1 HG11 sing N N 344 VAL CG1 HG12 sing N N 345 VAL CG1 HG13 sing N N 346 VAL CG2 HG21 sing N N 347 VAL CG2 HG22 sing N N 348 VAL CG2 HG23 sing N N 349 VAL OXT HXT sing N N 350 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 'CHLORIDE ION' CL 4 'PHOSPHATE ION' PO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3N9B _pdbx_initial_refinement_model.details 'PDB ENTRY 3N9B' #