HEADER RNA 06-OCT-10 3P4D TITLE ALTERNATINGLY MODIFIED 2'FLUORO RNA OCTAMER F/RC4G4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*(CFZ)P*CP*(CFZ)P*CP*(GF2)P*GP*(GF2)P*G)-3'; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED MODIFIED RNA OCTAMER KEYWDS RNA, 2'-FLUORO-RNA, O2'-MODIFICATION, OCTAMER, 2'-FLUORO 2'- KEYWDS 2 DEOXYCYTIDINE, 2'-FLUORO 2'-DEOXYGUANOSINE, SIRNA EXPDTA X-RAY DIFFRACTION AUTHOR P.S.PALLAN,E.M.GREENE,P.A.JICMAN,R.K.PANDEY,M.MANOHARAN,E.ROZNERS, AUTHOR 2 M.EGLI REVDAT 4 06-SEP-23 3P4D 1 LINK REVDAT 3 11-MAY-11 3P4D 1 JRNL REVDAT 2 13-APR-11 3P4D 1 REMARK REVDAT 1 05-JAN-11 3P4D 0 JRNL AUTH P.S.PALLAN,E.M.GREENE,P.A.JICMAN,R.K.PANDEY,M.MANOHARAN, JRNL AUTH 2 E.ROZNERS,M.EGLI JRNL TITL UNEXPECTED ORIGINS OF THE ENHANCED PAIRING AFFINITY OF JRNL TITL 2 2'-FLUORO-MODIFIED RNA. JRNL REF NUCLEIC ACIDS RES. V. 39 3482 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21183463 JRNL DOI 10.1093/NAR/GKQ1270 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 3544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.300 REMARK 3 FREE R VALUE TEST SET COUNT : 280 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 243 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 338 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.15000 REMARK 3 B22 (A**2) : -1.15000 REMARK 3 B33 (A**2) : 1.73000 REMARK 3 B12 (A**2) : -0.58000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.824 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 376 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 584 ; 2.124 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 78 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 168 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 376 ; 2.175 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 584 ; 2.765 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 28 REMARK 3 RESIDUE RANGE : A 7 A 27 REMARK 3 RESIDUE RANGE : B 201 B 208 REMARK 3 RESIDUE RANGE : A 101 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6376 9.3828 9.8008 REMARK 3 T TENSOR REMARK 3 T11: 0.0474 T22: 0.0712 REMARK 3 T33: 0.0929 T12: 0.0038 REMARK 3 T13: 0.0304 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 2.8079 L22: 2.8223 REMARK 3 L33: 1.0145 L12: 0.5057 REMARK 3 L13: -0.4315 L23: 0.7585 REMARK 3 S TENSOR REMARK 3 S11: 0.1501 S12: -0.2224 S13: -0.1464 REMARK 3 S21: 0.1378 S22: -0.0481 S23: 0.2360 REMARK 3 S31: -0.0893 S32: -0.0368 S33: -0.1020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3824 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1RXB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE (40 MM, PH 6.0), REMARK 280 SODIUM CHLORIDE (80 MM), SPERMINE TETRAHYDROCHLORIDE (12 MM), REMARK 280 AND 2-METHYL-2,4-PENTANEDIOL (MPD; 10% (V/V)), EQUILIBRATED REMARK 280 AGAINST A RESERVOIR OF MPD (1 ML, 35%), VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 20.81500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 12.01755 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.16300 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 20.81500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 12.01755 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.16300 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 20.81500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 12.01755 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.16300 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 20.81500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 12.01755 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.16300 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 20.81500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 12.01755 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 42.16300 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 20.81500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 12.01755 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.16300 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 24.03509 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 84.32600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 24.03509 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 84.32600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 24.03509 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 84.32600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 24.03509 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 84.32600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 24.03509 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 84.32600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 24.03509 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 84.32600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 15 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 13 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 106 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3P4B RELATED DB: PDB REMARK 900 RELATED ID: 3P4C RELATED DB: PDB DBREF 3P4D A 101 108 PDB 3P4D 3P4D 101 108 DBREF 3P4D B 201 208 PDB 3P4D 3P4D 201 208 SEQRES 1 A 8 CFZ C CFZ C GF2 G GF2 G SEQRES 1 B 8 CFZ C CFZ C GF2 G GF2 G MODRES 3P4D CFZ A 101 DC MODRES 3P4D CFZ A 103 DC MODRES 3P4D GF2 A 105 DG MODRES 3P4D GF2 A 107 DG MODRES 3P4D CFZ B 201 DC MODRES 3P4D CFZ B 203 DC MODRES 3P4D GF2 B 205 DG MODRES 3P4D GF2 B 207 DG HET CFZ A 101 17 HET CFZ A 103 20 HET GF2 A 105 23 HET GF2 A 107 23 HET CFZ B 201 17 HET CFZ B 203 20 HET GF2 B 205 23 HET GF2 B 207 23 HETNAM CFZ 2'-DEOXY-2'-FLUOROCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM GF2 2'-DEOXY-2'-FLUOROGUANOSINE 5'-(DIHYDROGEN PHOSPHATE) FORMUL 1 CFZ 4(C9 H13 F N3 O7 P) FORMUL 1 GF2 4(C10 H13 F N5 O7 P) FORMUL 3 HOH *28(H2 O) LINK O3' CFZ A 101 P C A 102 1555 1555 1.60 LINK O3' C A 102 P CFZ A 103 1555 1555 1.59 LINK O3' CFZ A 103 P C A 104 1555 1555 1.60 LINK O3' C A 104 P GF2 A 105 1555 1555 1.59 LINK O3' GF2 A 105 P G A 106 1555 1555 1.59 LINK O3' G A 106 P GF2 A 107 1555 1555 1.60 LINK O3' GF2 A 107 P G A 108 1555 1555 1.60 LINK O3' CFZ B 201 P C B 202 1555 1555 1.61 LINK O3' C B 202 P CFZ B 203 1555 1555 1.60 LINK O3' CFZ B 203 P C B 204 1555 1555 1.57 LINK O3' C B 204 P GF2 B 205 1555 1555 1.58 LINK O3' GF2 B 205 P G B 206 1555 1555 1.58 LINK O3' G B 206 P GF2 B 207 1555 1555 1.58 LINK O3' GF2 B 207 P G B 208 1555 1555 1.57 CRYST1 41.630 41.630 126.489 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024021 0.013869 0.000000 0.00000 SCALE2 0.000000 0.027737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007906 0.00000 HETATM 1 N1 CFZ A 101 1.915 7.831 2.949 1.00 32.33 N ANISOU 1 N1 CFZ A 101 3252 3880 5154 411 -300 88 N HETATM 2 C2 CFZ A 101 2.889 7.033 2.339 1.00 31.72 C ANISOU 2 C2 CFZ A 101 3242 3831 4980 370 -341 63 C HETATM 3 O2 CFZ A 101 2.604 5.879 2.111 1.00 32.77 O ANISOU 3 O2 CFZ A 101 3285 3955 5212 336 -382 7 O HETATM 4 N3 CFZ A 101 4.077 7.556 1.959 1.00 29.06 N ANISOU 4 N3 CFZ A 101 3053 3522 4465 368 -330 87 N HETATM 5 C4 CFZ A 101 4.308 8.828 2.178 1.00 30.81 C ANISOU 5 C4 CFZ A 101 3361 3739 4605 402 -282 140 C HETATM 6 N4 CFZ A 101 5.461 9.342 1.790 1.00 29.59 N ANISOU 6 N4 CFZ A 101 3344 3604 4294 391 -259 157 N HETATM 7 C5 CFZ A 101 3.354 9.664 2.819 1.00 33.76 C ANISOU 7 C5 CFZ A 101 3674 4077 5077 446 -241 167 C HETATM 8 C6 CFZ A 101 2.200 9.127 3.203 1.00 34.67 C ANISOU 8 C6 CFZ A 101 3637 4169 5365 449 -247 138 C HETATM 9 C1' CFZ A 101 0.590 7.287 3.343 1.00 35.13 C ANISOU 9 C1' CFZ A 101 3427 4198 5724 407 -295 47 C HETATM 10 C2' CFZ A 101 0.588 6.357 4.545 1.00 33.52 C ANISOU 10 C2' CFZ A 101 3164 3965 5609 322 -151 63 C HETATM 11 F2' CFZ A 101 -0.430 5.448 4.404 1.00 38.02 F ANISOU 11 F2' CFZ A 101 3572 4500 6373 303 -185 2 F HETATM 12 C3' CFZ A 101 0.313 7.344 5.666 1.00 35.03 C ANISOU 12 C3' CFZ A 101 3364 4144 5803 325 -8 103 C HETATM 13 O3' CFZ A 101 -0.187 6.735 6.826 1.00 37.01 O ANISOU 13 O3' CFZ A 101 3534 4367 6160 254 136 115 O HETATM 14 C4' CFZ A 101 -0.800 8.117 4.986 1.00 39.61 C ANISOU 14 C4' CFZ A 101 3848 4701 6499 413 -103 58 C HETATM 15 O4' CFZ A 101 -0.221 8.405 3.689 1.00 35.14 O ANISOU 15 O4' CFZ A 101 3382 4171 5798 468 -265 62 O HETATM 16 C5' CFZ A 101 -1.133 9.423 5.668 1.00 41.16 C ANISOU 16 C5' CFZ A 101 4051 4872 6716 452 -1 73 C HETATM 17 O5' CFZ A 101 -0.037 10.297 5.525 1.00 40.78 O ANISOU 17 O5' CFZ A 101 4173 4844 6477 471 5 122 O