HEADER LIGASE 06-OCT-10 3P4E TITLE PHOSPHORIBOSYLFORMYLGLYCINAMIDINE CYCLO-LIGASE FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLFORMYLGLYCINAMIDINE CYCLO-LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AIRS, PHOSPHORIBOSYL-AMINOIMIDAZOLE SYNTHETASE, AIR COMPND 5 SYNTHASE; COMPND 6 EC: 6.3.3.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: O1 BIOVAR EL TOR STR. N16961; SOURCE 5 GENE: PURM, VC2226, VC_2226; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, PHOSPHORIBOSYLAMINOIMIDAZOLE SYNTHETASE, PURM, AMP, KEYWDS 3 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,M.ZHOU,L.PAPAZISI,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 06-SEP-23 3P4E 1 REMARK SEQADV REVDAT 2 08-NOV-17 3P4E 1 REMARK REVDAT 1 20-OCT-10 3P4E 0 JRNL AUTH J.OSIPIUK,M.ZHOU,L.PAPAZISI,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL PHOSPHORIBOSYLFORMYLGLYCINAMIDINE CYCLO-LIGASE FROM VIBRIO JRNL TITL 2 CHOLERAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1966 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2678 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2426 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.29000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.766 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2695 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1794 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3691 ; 1.703 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4457 ; 0.990 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 6.175 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;39.030 ;25.664 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;14.735 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.937 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3051 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 497 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1676 ; 0.956 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 700 ; 0.286 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2714 ; 1.746 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1019 ; 2.720 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 951 ; 4.406 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 35.4502 29.7983 6.5817 REMARK 3 T TENSOR REMARK 3 T11: 0.0380 T22: 0.0107 REMARK 3 T33: 0.0129 T12: 0.0038 REMARK 3 T13: 0.0079 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.8932 L22: 0.5692 REMARK 3 L33: 0.6070 L12: 0.0333 REMARK 3 L13: 0.2425 L23: -0.1361 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: 0.0295 S13: 0.0025 REMARK 3 S21: -0.0174 S22: -0.0167 S23: 0.0753 REMARK 3 S31: 0.0312 S32: -0.0252 S33: -0.0102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3P4E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39208 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 40.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, HKL-3000 REMARK 200 STARTING MODEL: 1CLI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM-CITRATE DIBASIC, 20% REMARK 280 PEG 3350, PH 4.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.91933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.45967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.45967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.91933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 PRO A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 TYR A 10 REMARK 465 LYS A 11 REMARK 465 ASP A 12 REMARK 465 ALA A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 15 REMARK 465 ASP A 16 REMARK 465 ILE A 17 REMARK 465 GLY A 42 REMARK 465 LEU A 43 REMARK 465 GLY A 44 REMARK 465 GLY A 45 REMARK 465 PHE A 46 REMARK 465 GLY A 47 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 369 O HOH A 545 1.99 REMARK 500 O HOH A 568 O HOH A 627 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 191 -116.26 61.36 REMARK 500 THR A 249 -124.53 -125.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90905 RELATED DB: TARGETDB DBREF 3P4E A 1 346 UNP Q9KPY6 PUR5_VIBCH 1 346 SEQADV 3P4E SER A -2 UNP Q9KPY6 EXPRESSION TAG SEQADV 3P4E ASN A -1 UNP Q9KPY6 EXPRESSION TAG SEQADV 3P4E ALA A 0 UNP Q9KPY6 EXPRESSION TAG SEQRES 1 A 349 SER ASN ALA MET SER GLY ASN ASN PRO SER LEU SER TYR SEQRES 2 A 349 LYS ASP ALA GLY VAL ASP ILE ASP ALA GLY ASN ALA LEU SEQRES 3 A 349 VAL GLU ARG ILE LYS GLY ALA VAL LYS ARG THR ARG ARG SEQRES 4 A 349 PRO GLU VAL MET GLY GLY LEU GLY GLY PHE GLY ALA LEU SEQRES 5 A 349 CYS GLU LEU PRO THR LYS TYR LYS HIS PRO VAL LEU VAL SEQRES 6 A 349 SER GLY THR ASP GLY VAL GLY THR LYS LEU ARG LEU ALA SEQRES 7 A 349 LEU ASP MET LYS LYS HIS ASP THR ILE GLY ILE ASP LEU SEQRES 8 A 349 VAL ALA MET CYS VAL ASN ASP LEU ILE VAL GLN GLY ALA SEQRES 9 A 349 GLU PRO LEU PHE PHE LEU ASP TYR TYR ALA THR GLY LYS SEQRES 10 A 349 LEU ASP VAL ASP THR ALA ALA GLU VAL ILE SER GLY ILE SEQRES 11 A 349 ALA ASP GLY CYS LEU GLN ALA GLY CYS ALA LEU ILE GLY SEQRES 12 A 349 GLY GLU THR ALA GLU MET PRO GLY MET TYR GLU GLY GLU SEQRES 13 A 349 ASP TYR ASP VAL ALA GLY PHE CYS VAL GLY VAL VAL GLU SEQRES 14 A 349 LYS GLU GLU ILE ILE ASP GLY SER LYS VAL GLN VAL GLY SEQRES 15 A 349 ASP ALA LEU ILE ALA VAL GLY SER SER GLY PRO HIS SER SEQRES 16 A 349 ASN GLY TYR SER LEU VAL ARG LYS ILE LEU GLU VAL SER SEQRES 17 A 349 LYS ALA ASP LYS ASN GLU ARG LEU ALA GLY LYS THR ILE SEQRES 18 A 349 GLY GLU HIS LEU LEU ALA PRO THR LYS ILE TYR ILE LYS SEQRES 19 A 349 SER GLY LEU LYS LEU ILE ALA GLU HIS ASP ILE HIS ALA SEQRES 20 A 349 ILE SER HIS ILE THR GLY GLY GLY PHE TRP GLU ASN ILE SEQRES 21 A 349 PRO ARG VAL LEU PRO GLU GLY THR LYS ALA VAL ILE ASP SEQRES 22 A 349 GLY LYS SER TRP GLU TRP PRO VAL ILE PHE GLN TRP LEU SEQRES 23 A 349 GLN GLU LYS GLY ASN VAL THR THR HIS GLU MET TYR ARG SEQRES 24 A 349 THR PHE ASN CYS GLY VAL GLY LEU ILE ILE ALA LEU PRO SEQRES 25 A 349 LYS ASP GLN ALA ASN ALA ALA VAL ALA LEU LEU GLN ALA SEQRES 26 A 349 GLU GLY GLU THR ALA TRP VAL ILE GLY GLU ILE ALA ALA SEQRES 27 A 349 ALA ASN SER ASN GLU ALA GLN VAL GLU ILE ASN HET AMP A 501 23 HET GOL A 502 6 HET CIT A 503 13 HET EDO A 504 4 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM GOL GLYCEROL HETNAM CIT CITRIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 GOL C3 H8 O3 FORMUL 4 CIT C6 H8 O7 FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *282(H2 O) HELIX 1 1 ASP A 18 THR A 34 1 17 HELIX 2 2 GLY A 69 MET A 78 1 10 HELIX 3 3 THR A 83 VAL A 98 1 16 HELIX 4 4 ASP A 116 GLY A 135 1 20 HELIX 5 5 GLU A 168 ILE A 170 5 3 HELIX 6 6 GLY A 194 LYS A 206 1 13 HELIX 7 7 ILE A 218 ALA A 224 1 7 HELIX 8 8 TYR A 229 HIS A 240 1 12 HELIX 9 9 GLY A 251 ILE A 257 1 7 HELIX 10 10 PRO A 258 LEU A 261 5 4 HELIX 11 11 PRO A 277 ASN A 288 1 12 HELIX 12 12 THR A 290 ARG A 296 1 7 HELIX 13 13 PRO A 309 GLU A 323 1 15 SHEET 1 A 2 VAL A 39 MET A 40 0 SHEET 2 A 2 LEU A 49 CYS A 50 -1 O LEU A 49 N MET A 40 SHEET 1 B 4 PRO A 59 ASP A 66 0 SHEET 2 B 4 TYR A 155 GLU A 166 -1 O GLY A 163 N VAL A 62 SHEET 3 B 4 GLU A 102 THR A 112 -1 N ALA A 111 O ASP A 156 SHEET 4 B 4 ALA A 137 GLU A 145 1 O ALA A 144 N TYR A 110 SHEET 1 C 6 ALA A 244 HIS A 247 0 SHEET 2 C 6 VAL A 302 LEU A 308 -1 O ILE A 305 N SER A 246 SHEET 3 C 6 ALA A 181 GLY A 186 -1 N ILE A 183 O ILE A 306 SHEET 4 C 6 ALA A 327 ALA A 335 -1 O TRP A 328 N ALA A 184 SHEET 5 C 6 THR A 265 ASP A 270 -1 N ASP A 270 O ILE A 330 SHEET 6 C 6 VAL A 343 ASN A 346 1 O GLU A 344 N ILE A 269 SHEET 1 D 2 ARG A 212 LEU A 213 0 SHEET 2 D 2 LYS A 216 THR A 217 -1 O LYS A 216 N LEU A 213 SITE 1 AC1 13 VAL A 24 ASP A 108 ILE A 124 GLY A 140 SITE 2 AC1 13 GLY A 141 GLU A 142 THR A 143 HOH A 523 SITE 3 AC1 13 HOH A 606 HOH A 607 HOH A 608 HOH A 609 SITE 4 AC1 13 HOH A 610 SITE 1 AC2 8 LYS A 80 ASP A 82 LEU A 213 TRP A 282 SITE 2 AC2 8 GLU A 285 HOH A 432 HOH A 497 HOH A 624 SITE 1 AC3 11 ASN A 193 GLY A 194 TYR A 195 SER A 196 SITE 2 AC3 11 LEU A 197 GLY A 250 HOH A 360 HOH A 535 SITE 3 AC3 11 HOH A 536 HOH A 599 HOH A 600 SITE 1 AC4 4 VAL A 98 ILE A 171 ALA A 244 ILE A 245 CRYST1 106.277 106.277 61.379 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009409 0.005433 0.000000 0.00000 SCALE2 0.000000 0.010865 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016292 0.00000