HEADER TRANSFERASE 06-OCT-10 3P4I TITLE CRYSTAL STRUCTURE OF ACETATE KINASE FROM MYCOBACTERIUM AVIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM; SOURCE 3 ORGANISM_TAXID: 1764; SOURCE 4 GENE: ACKA, MAV_4758; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, MYCOBACTERIUM, TUBERCULOSIS, NON- KEYWDS 3 PATHOGENIC SPECIES, ORTHOLOG, PYRUVATE, PROPANOATE, ACETYL-COA KEYWDS 4 BIOSYNTHESIS, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 06-SEP-23 3P4I 1 REMARK SEQADV REVDAT 3 15-APR-15 3P4I 1 JRNL REVDAT 2 11-MAR-15 3P4I 1 JRNL VERSN REVDAT 1 10-NOV-10 3P4I 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 38908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1946 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2680 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5633 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.49000 REMARK 3 B22 (A**2) : 2.82000 REMARK 3 B33 (A**2) : -1.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.220 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.910 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5763 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7841 ; 1.472 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 765 ; 5.754 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;33.778 ;22.490 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 883 ;15.904 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;18.663 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 912 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4424 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3766 ; 0.614 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6008 ; 1.161 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1997 ; 1.854 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1829 ; 3.146 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 8 A 385 6 REMARK 3 1 B 8 B 385 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2739 ; 0.420 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 2739 ; 3.050 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0628 48.0165 15.0253 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.1441 REMARK 3 T33: 0.1837 T12: -0.0254 REMARK 3 T13: -0.0519 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 1.4324 L22: 0.8472 REMARK 3 L33: 0.3037 L12: 0.4931 REMARK 3 L13: 0.0900 L23: 0.4723 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: -0.1551 S13: 0.1291 REMARK 3 S21: -0.1017 S22: -0.0448 S23: 0.0676 REMARK 3 S31: -0.0438 S32: -0.0205 S33: 0.0375 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 123 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3950 27.2357 16.5519 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.1813 REMARK 3 T33: 0.1728 T12: -0.0063 REMARK 3 T13: -0.0153 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 0.0847 L22: 0.2362 REMARK 3 L33: 0.1052 L12: 0.0597 REMARK 3 L13: 0.0524 L23: -0.0779 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: 0.0045 S13: 0.0311 REMARK 3 S21: -0.0193 S22: 0.0796 S23: 0.0568 REMARK 3 S31: -0.0492 S32: -0.0262 S33: -0.0198 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 260 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): 39.1690 28.1722 38.4162 REMARK 3 T TENSOR REMARK 3 T11: 0.2741 T22: 0.1585 REMARK 3 T33: 0.1237 T12: -0.0446 REMARK 3 T13: 0.0239 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 2.3204 L22: 1.3111 REMARK 3 L33: 0.3036 L12: -1.2238 REMARK 3 L13: -0.6230 L23: 0.5870 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: -0.0519 S13: 0.1282 REMARK 3 S21: 0.0485 S22: 0.0469 S23: -0.1212 REMARK 3 S31: -0.0788 S32: 0.0357 S33: -0.0802 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 286 A 388 REMARK 3 ORIGIN FOR THE GROUP (A): 43.7255 22.8507 17.7082 REMARK 3 T TENSOR REMARK 3 T11: 0.1623 T22: 0.1795 REMARK 3 T33: 0.1569 T12: -0.0129 REMARK 3 T13: -0.0073 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.1353 L22: 0.2174 REMARK 3 L33: 0.2090 L12: 0.0878 REMARK 3 L13: -0.0713 L23: -0.0410 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: -0.0174 S13: 0.0040 REMARK 3 S21: -0.0209 S22: 0.0615 S23: -0.0093 REMARK 3 S31: 0.0115 S32: 0.0327 S33: -0.0365 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 57 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1974 -13.1012 35.5937 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: 0.2887 REMARK 3 T33: 0.1680 T12: -0.1106 REMARK 3 T13: 0.0330 T23: -0.0785 REMARK 3 L TENSOR REMARK 3 L11: 2.4266 L22: 1.0221 REMARK 3 L33: 0.4914 L12: -0.7393 REMARK 3 L13: -0.6332 L23: 0.6113 REMARK 3 S TENSOR REMARK 3 S11: -0.1081 S12: 0.3793 S13: 0.0070 REMARK 3 S21: -0.0060 S22: -0.0206 S23: 0.0122 REMARK 3 S31: 0.0640 S32: -0.1701 S33: 0.1287 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 58 B 71 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7156 -21.8790 37.1931 REMARK 3 T TENSOR REMARK 3 T11: 0.5931 T22: 0.6069 REMARK 3 T33: 1.2883 T12: -0.2440 REMARK 3 T13: 0.3568 T23: -0.8735 REMARK 3 L TENSOR REMARK 3 L11: 14.6013 L22: 1.0220 REMARK 3 L33: 2.3572 L12: -3.8332 REMARK 3 L13: -5.8624 L23: 1.5318 REMARK 3 S TENSOR REMARK 3 S11: -1.6238 S12: 2.8153 S13: -4.1385 REMARK 3 S21: 0.5831 S22: -0.3833 S23: 1.0448 REMARK 3 S31: 0.7484 S32: -1.1435 S33: 2.0071 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 72 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6391 -3.9039 45.2961 REMARK 3 T TENSOR REMARK 3 T11: 0.1408 T22: 0.2081 REMARK 3 T33: 0.1344 T12: -0.0245 REMARK 3 T13: 0.0039 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.6514 L22: 1.2113 REMARK 3 L33: 0.7430 L12: 0.7561 REMARK 3 L13: -0.5852 L23: -0.4609 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: 0.1034 S13: 0.0333 REMARK 3 S21: 0.0456 S22: -0.0082 S23: -0.0133 REMARK 3 S31: 0.0224 S32: -0.1618 S33: 0.0220 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 139 B 388 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7896 2.1958 23.2796 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.2006 REMARK 3 T33: 0.1461 T12: -0.0236 REMARK 3 T13: -0.0191 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.0560 L22: 0.2473 REMARK 3 L33: 0.2317 L12: -0.0240 REMARK 3 L13: -0.0707 L23: -0.1492 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: 0.0093 S13: 0.0118 REMARK 3 S21: 0.0077 S22: 0.0520 S23: 0.0088 REMARK 3 S31: 0.0405 S32: -0.0452 S33: -0.0387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3P4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 1TUY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 23.4 MG/ML, 10 % PEG 8000, REMARK 280 0.1 M TRIS PH 7.0, 0.1 M MGCL2 WITH 25% ETHYLENE GLYCOL AS CRYO- REMARK 280 PROTECTANT, CRSYTAL TRACKING ID 216702H7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.82000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.88500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.85500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.88500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.82000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.85500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 43 REMARK 465 GLU A 44 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ASP B 3 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 ASP B 6 REMARK 465 GLY B 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 112 CG CD1 CD2 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 ARG A 271 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 345 CG CD OE1 OE2 REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 68 CG1 CG2 REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 THR B 72 OG1 CG2 REMARK 470 ARG B 161 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 271 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 274 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 275 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 51 -169.87 -125.49 REMARK 500 SER A 262 -152.40 -125.90 REMARK 500 ASP A 272 105.71 -58.98 REMARK 500 ALA A 319 -177.13 73.25 REMARK 500 ASN A 373 79.22 -150.16 REMARK 500 PRO B 222 6.19 -69.57 REMARK 500 SER B 262 -159.34 -112.55 REMARK 500 ARG B 271 -70.22 -102.36 REMARK 500 ALA B 319 -176.56 67.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 389 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYAVA.00640.A RELATED DB: TARGETDB DBREF 3P4I A 3 388 UNP A0QLU8 A0QLU8_MYCA1 2 387 DBREF 3P4I B 3 388 UNP A0QLU8 A0QLU8_MYCA1 2 387 SEQADV 3P4I GLY A -3 UNP A0QLU8 EXPRESSION TAG SEQADV 3P4I PRO A -2 UNP A0QLU8 EXPRESSION TAG SEQADV 3P4I GLY A -1 UNP A0QLU8 EXPRESSION TAG SEQADV 3P4I SER A 0 UNP A0QLU8 EXPRESSION TAG SEQADV 3P4I MET A 1 UNP A0QLU8 EXPRESSION TAG SEQADV 3P4I VAL A 2 UNP A0QLU8 EXPRESSION TAG SEQADV 3P4I GLY B -3 UNP A0QLU8 EXPRESSION TAG SEQADV 3P4I PRO B -2 UNP A0QLU8 EXPRESSION TAG SEQADV 3P4I GLY B -1 UNP A0QLU8 EXPRESSION TAG SEQADV 3P4I SER B 0 UNP A0QLU8 EXPRESSION TAG SEQADV 3P4I MET B 1 UNP A0QLU8 EXPRESSION TAG SEQADV 3P4I VAL B 2 UNP A0QLU8 EXPRESSION TAG SEQRES 1 A 392 GLY PRO GLY SER MET VAL ASP GLY SER ASP GLY ALA ARG SEQRES 2 A 392 ARG VAL LEU VAL ILE ASN SER GLY SER SER SER LEU LYS SEQRES 3 A 392 PHE GLN LEU VAL ASP PRO GLU SER GLY VAL ALA ALA SER SEQRES 4 A 392 THR GLY ILE VAL GLU ARG ILE GLY GLU GLU SER SER PRO SEQRES 5 A 392 VAL PRO ASP HIS ASP ALA ALA LEU ARG ARG ALA PHE ASP SEQRES 6 A 392 MET LEU ALA GLY ASP GLY VAL ASP LEU ASN THR ALA GLY SEQRES 7 A 392 LEU VAL ALA VAL GLY HIS ARG VAL VAL HIS GLY GLY ASN SEQRES 8 A 392 THR PHE TYR ARG PRO THR VAL LEU ASP ASP ALA VAL ILE SEQRES 9 A 392 ALA ARG LEU HIS GLU LEU SER GLU LEU ALA PRO LEU HIS SEQRES 10 A 392 ASN PRO PRO ALA LEU LEU GLY ILE GLU VAL ALA ARG ARG SEQRES 11 A 392 LEU LEU PRO GLY ILE ALA HIS VAL ALA VAL PHE ASP THR SEQRES 12 A 392 GLY PHE PHE HIS ASP LEU PRO PRO ALA ALA ALA THR TYR SEQRES 13 A 392 ALA ILE ASP ARG GLU LEU ALA ASP ARG TRP GLN ILE ARG SEQRES 14 A 392 ARG TYR GLY PHE HIS GLY THR SER HIS ARG TYR VAL SER SEQRES 15 A 392 GLU GLN ALA ALA ALA PHE LEU ASP ARG PRO LEU ARG GLY SEQRES 16 A 392 LEU LYS GLN ILE VAL LEU HIS LEU GLY ASN GLY CYS SER SEQRES 17 A 392 ALA SER ALA ILE ALA GLY THR ARG PRO LEU ASP THR SER SEQRES 18 A 392 MET GLY LEU THR PRO LEU GLU GLY LEU VAL MET GLY THR SEQRES 19 A 392 ARG SER GLY ASP ILE ASP PRO SER VAL VAL SER TYR LEU SEQRES 20 A 392 CYS HIS THR ALA GLY MET GLY VAL ASP ASP VAL GLU SER SEQRES 21 A 392 MET LEU ASN HIS ARG SER GLY VAL VAL GLY LEU SER GLY SEQRES 22 A 392 VAL ARG ASP PHE ARG ARG LEU ARG GLU LEU ILE GLU SER SEQRES 23 A 392 GLY ASP GLY ALA ALA GLN LEU ALA TYR SER VAL PHE THR SEQRES 24 A 392 HIS ARG LEU ARG LYS TYR ILE GLY ALA TYR LEU ALA VAL SEQRES 25 A 392 LEU GLY HIS THR ASP VAL ILE SER PHE THR ALA GLY ILE SEQRES 26 A 392 GLY GLU ASN ASP ALA ALA VAL ARG ARG ASP ALA VAL SER SEQRES 27 A 392 GLY MET GLU GLU LEU GLY ILE VAL LEU ASP GLU ARG ARG SEQRES 28 A 392 ASN LEU PRO GLY ALA LYS GLY ALA ARG GLN ILE SER ALA SEQRES 29 A 392 ASP ASP SER PRO ILE THR VAL LEU VAL VAL PRO THR ASN SEQRES 30 A 392 GLU GLU LEU ALA ILE ALA ARG ASP CYS VAL ARG VAL LEU SEQRES 31 A 392 GLY GLY SEQRES 1 B 392 GLY PRO GLY SER MET VAL ASP GLY SER ASP GLY ALA ARG SEQRES 2 B 392 ARG VAL LEU VAL ILE ASN SER GLY SER SER SER LEU LYS SEQRES 3 B 392 PHE GLN LEU VAL ASP PRO GLU SER GLY VAL ALA ALA SER SEQRES 4 B 392 THR GLY ILE VAL GLU ARG ILE GLY GLU GLU SER SER PRO SEQRES 5 B 392 VAL PRO ASP HIS ASP ALA ALA LEU ARG ARG ALA PHE ASP SEQRES 6 B 392 MET LEU ALA GLY ASP GLY VAL ASP LEU ASN THR ALA GLY SEQRES 7 B 392 LEU VAL ALA VAL GLY HIS ARG VAL VAL HIS GLY GLY ASN SEQRES 8 B 392 THR PHE TYR ARG PRO THR VAL LEU ASP ASP ALA VAL ILE SEQRES 9 B 392 ALA ARG LEU HIS GLU LEU SER GLU LEU ALA PRO LEU HIS SEQRES 10 B 392 ASN PRO PRO ALA LEU LEU GLY ILE GLU VAL ALA ARG ARG SEQRES 11 B 392 LEU LEU PRO GLY ILE ALA HIS VAL ALA VAL PHE ASP THR SEQRES 12 B 392 GLY PHE PHE HIS ASP LEU PRO PRO ALA ALA ALA THR TYR SEQRES 13 B 392 ALA ILE ASP ARG GLU LEU ALA ASP ARG TRP GLN ILE ARG SEQRES 14 B 392 ARG TYR GLY PHE HIS GLY THR SER HIS ARG TYR VAL SER SEQRES 15 B 392 GLU GLN ALA ALA ALA PHE LEU ASP ARG PRO LEU ARG GLY SEQRES 16 B 392 LEU LYS GLN ILE VAL LEU HIS LEU GLY ASN GLY CYS SER SEQRES 17 B 392 ALA SER ALA ILE ALA GLY THR ARG PRO LEU ASP THR SER SEQRES 18 B 392 MET GLY LEU THR PRO LEU GLU GLY LEU VAL MET GLY THR SEQRES 19 B 392 ARG SER GLY ASP ILE ASP PRO SER VAL VAL SER TYR LEU SEQRES 20 B 392 CYS HIS THR ALA GLY MET GLY VAL ASP ASP VAL GLU SER SEQRES 21 B 392 MET LEU ASN HIS ARG SER GLY VAL VAL GLY LEU SER GLY SEQRES 22 B 392 VAL ARG ASP PHE ARG ARG LEU ARG GLU LEU ILE GLU SER SEQRES 23 B 392 GLY ASP GLY ALA ALA GLN LEU ALA TYR SER VAL PHE THR SEQRES 24 B 392 HIS ARG LEU ARG LYS TYR ILE GLY ALA TYR LEU ALA VAL SEQRES 25 B 392 LEU GLY HIS THR ASP VAL ILE SER PHE THR ALA GLY ILE SEQRES 26 B 392 GLY GLU ASN ASP ALA ALA VAL ARG ARG ASP ALA VAL SER SEQRES 27 B 392 GLY MET GLU GLU LEU GLY ILE VAL LEU ASP GLU ARG ARG SEQRES 28 B 392 ASN LEU PRO GLY ALA LYS GLY ALA ARG GLN ILE SER ALA SEQRES 29 B 392 ASP ASP SER PRO ILE THR VAL LEU VAL VAL PRO THR ASN SEQRES 30 B 392 GLU GLU LEU ALA ILE ALA ARG ASP CYS VAL ARG VAL LEU SEQRES 31 B 392 GLY GLY HET EDO A 389 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *232(H2 O) HELIX 1 1 ASP A 51 ASP A 66 1 16 HELIX 2 2 ASP A 96 HIS A 104 1 9 HELIX 3 3 GLU A 105 SER A 107 5 3 HELIX 4 4 HIS A 113 LEU A 128 1 16 HELIX 5 5 THR A 139 HIS A 143 5 5 HELIX 6 6 PRO A 146 THR A 151 1 6 HELIX 7 7 ASP A 155 GLN A 163 1 9 HELIX 8 8 HIS A 170 ASP A 186 1 17 HELIX 9 9 PRO A 188 GLY A 191 5 4 HELIX 10 10 SER A 238 GLY A 248 1 11 HELIX 11 11 GLY A 250 ARG A 261 1 12 HELIX 12 12 SER A 262 GLY A 269 1 8 HELIX 13 13 PHE A 273 SER A 282 1 10 HELIX 14 14 ASP A 284 GLY A 310 1 27 HELIX 15 15 ALA A 319 GLU A 323 1 5 HELIX 16 16 ASP A 325 SER A 334 1 10 HELIX 17 17 MET A 336 GLY A 340 5 5 HELIX 18 18 ASN A 373 LEU A 386 1 14 HELIX 19 19 ASP B 51 ASP B 66 1 16 HELIX 20 20 ASP B 69 ALA B 73 5 5 HELIX 21 21 ASP B 96 GLU B 105 1 10 HELIX 22 22 HIS B 113 LEU B 128 1 16 HELIX 23 23 THR B 139 HIS B 143 5 5 HELIX 24 24 PRO B 146 THR B 151 1 6 HELIX 25 25 ASP B 155 GLN B 163 1 9 HELIX 26 26 HIS B 170 LEU B 185 1 16 HELIX 27 27 PRO B 188 GLY B 191 5 4 HELIX 28 28 PRO B 237 ALA B 247 1 11 HELIX 29 29 GLY B 250 ARG B 261 1 12 HELIX 30 30 SER B 262 GLY B 269 1 8 HELIX 31 31 ASP B 272 SER B 282 1 11 HELIX 32 32 ASP B 284 GLY B 310 1 27 HELIX 33 33 ALA B 319 ASP B 325 1 7 HELIX 34 34 ASP B 325 SER B 334 1 10 HELIX 35 35 MET B 336 GLY B 340 5 5 HELIX 36 36 ASN B 373 LEU B 386 1 14 SHEET 1 A 6 ALA A 33 VAL A 39 0 SHEET 2 A 6 LEU A 21 VAL A 26 -1 N LEU A 21 O VAL A 39 SHEET 3 A 6 ARG A 10 SER A 16 -1 N ASN A 15 O LYS A 22 SHEET 4 A 6 LEU A 75 VAL A 82 1 O GLY A 79 N ILE A 14 SHEET 5 A 6 ALA A 132 PHE A 137 1 O VAL A 134 N HIS A 80 SHEET 6 A 6 THR A 93 VAL A 94 -1 N THR A 93 O ALA A 135 SHEET 1 B 6 ARG A 212 THR A 216 0 SHEET 2 B 6 CYS A 203 ALA A 209 -1 N ALA A 207 O LEU A 214 SHEET 3 B 6 LYS A 193 LEU A 199 -1 N GLN A 194 O ILE A 208 SHEET 4 B 6 VAL A 314 THR A 318 1 O THR A 318 N LEU A 199 SHEET 5 B 6 THR A 366 VAL A 369 1 O LEU A 368 N ILE A 315 SHEET 6 B 6 ARG A 356 GLN A 357 -1 N ARG A 356 O VAL A 369 SHEET 1 C 6 ALA B 33 VAL B 39 0 SHEET 2 C 6 LEU B 21 VAL B 26 -1 N LEU B 21 O VAL B 39 SHEET 3 C 6 ARG B 10 SER B 16 -1 N VAL B 13 O GLN B 24 SHEET 4 C 6 LEU B 75 VAL B 82 1 O GLY B 79 N ILE B 14 SHEET 5 C 6 ALA B 132 PHE B 137 1 O VAL B 134 N HIS B 80 SHEET 6 C 6 THR B 93 VAL B 94 -1 N THR B 93 O ALA B 135 SHEET 1 D 6 ARG B 212 THR B 216 0 SHEET 2 D 6 CYS B 203 ALA B 209 -1 N ALA B 207 O LEU B 214 SHEET 3 D 6 LYS B 193 LEU B 199 -1 N GLN B 194 O ILE B 208 SHEET 4 D 6 VAL B 314 THR B 318 1 O SER B 316 N LEU B 197 SHEET 5 D 6 THR B 366 VAL B 369 1 O LEU B 368 N ILE B 315 SHEET 6 D 6 ARG B 356 GLN B 357 -1 N ARG B 356 O VAL B 369 SITE 1 AC1 6 ARG A 190 THR A 211 LEU B 128 PRO B 129 SITE 2 AC1 6 GLY B 130 ILE B 131 CRYST1 85.640 101.710 105.770 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011677 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009454 0.00000