HEADER LIGASE 07-OCT-10 3P52 TITLE NH3-DEPENDENT NAD SYNTHETASE FROM CAMPYLOBACTER JEJUNI SUBSP. JEJUNI TITLE 2 NCTC 11168 IN COMPLEX WITH THE NITRATE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NH(3)-DEPENDENT NAD(+) SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.3.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 GENE: CJ0810, NADE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, NAD+ SYNTHETASE, CAMPYLOBACTER JEJUNI, NADE, CSGID, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,Z.WAWRZAK,O.ONOPRIYENKO,T.SKARINA,A.EDWARDS, AUTHOR 2 A.SAVCHENKO,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 5 30-OCT-24 3P52 1 REMARK REVDAT 4 06-DEC-23 3P52 1 REMARK REVDAT 3 06-SEP-23 3P52 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3P52 1 REMARK REVDAT 1 27-OCT-10 3P52 0 JRNL AUTH E.V.FILIPPOVA,Z.WAWRZAK,O.ONOPRIYENKO,T.SKARINA,A.EDWARDS, JRNL AUTH 2 A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL NH3-DEPENDENT NAD SYNTHETASE FROM CAMPYLOBACTER JEJUNI JRNL TITL 2 SUBSP. JEJUNI NCTC 11168 IN COMPLEX WITH THE NITRATE ION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 19563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1056 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1392 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3577 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.27000 REMARK 3 B22 (A**2) : 1.27000 REMARK 3 B33 (A**2) : -1.91000 REMARK 3 B12 (A**2) : 0.64000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.220 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.215 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3636 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4883 ; 1.653 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 5.218 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;35.761 ;25.811 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 720 ;19.143 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.196 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 573 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2600 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2281 ; 0.720 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3633 ; 1.475 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1355 ; 2.970 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1250 ; 4.636 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1774 ; 0.06 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 1774 ; 0.13 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): -35.6979 -59.2698 -27.5960 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.1786 REMARK 3 T33: 0.1620 T12: 0.1559 REMARK 3 T13: 0.0462 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 1.4509 L22: 1.1115 REMARK 3 L33: 1.2535 L12: 0.3462 REMARK 3 L13: -0.4081 L23: 0.3199 REMARK 3 S TENSOR REMARK 3 S11: -0.1011 S12: -0.0569 S13: -0.3503 REMARK 3 S21: -0.0434 S22: -0.0241 S23: -0.2633 REMARK 3 S31: 0.3218 S32: 0.3370 S33: 0.1251 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 249 REMARK 3 ORIGIN FOR THE GROUP (A): -25.5214 -32.3445 -20.3277 REMARK 3 T TENSOR REMARK 3 T11: 0.0241 T22: 0.3748 REMARK 3 T33: 0.1557 T12: 0.0021 REMARK 3 T13: -0.0097 T23: 0.0645 REMARK 3 L TENSOR REMARK 3 L11: 1.6467 L22: 2.1111 REMARK 3 L33: 1.4931 L12: -0.2234 REMARK 3 L13: -0.0413 L23: 0.3944 REMARK 3 S TENSOR REMARK 3 S11: -0.1255 S12: -0.1153 S13: -0.0472 REMARK 3 S21: 0.0858 S22: 0.0372 S23: -0.5127 REMARK 3 S31: 0.0683 S32: 0.5084 S33: 0.0883 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3P52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20690 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.88200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MOLECULAR REPLACEMENT REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP, PHENIX, CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1XNH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.25 M NANITRATE, 0.1 M BIS-TRIS, 10 REMARK 280 MM NAD, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -120.94500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -60.47250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -104.74144 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A -2 REMARK 465 SER A -1 REMARK 465 ALA A 179 REMARK 465 PRO A 180 REMARK 465 SER A 181 REMARK 465 ALA A 182 REMARK 465 ASP A 183 REMARK 465 LEU A 184 REMARK 465 TRP A 185 REMARK 465 GLU A 186 REMARK 465 ASN A 187 REMARK 465 GLN A 188 REMARK 465 SER A 189 REMARK 465 ASP A 190 REMARK 465 GLU A 191 REMARK 465 ALA A 192 REMARK 465 ASP A 193 REMARK 465 LEU A 194 REMARK 465 GLY A 195 REMARK 465 ILE A 246 REMARK 465 ASN B -2 REMARK 465 SER B -1 REMARK 465 ALA B 0 REMARK 465 ALA B 179 REMARK 465 PRO B 180 REMARK 465 SER B 181 REMARK 465 ALA B 182 REMARK 465 ASP B 183 REMARK 465 LEU B 184 REMARK 465 TRP B 185 REMARK 465 GLU B 186 REMARK 465 ASN B 187 REMARK 465 GLN B 188 REMARK 465 SER B 189 REMARK 465 ASP B 190 REMARK 465 GLU B 191 REMARK 465 ALA B 192 REMARK 465 ASP B 193 REMARK 465 LEU B 194 REMARK 465 ILE B 246 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 TYR A 140 CE1 CE2 CZ OH REMARK 470 TYR B 140 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 48 -117.22 57.17 REMARK 500 ASN A 50 42.37 -84.46 REMARK 500 SER A 61 -63.36 -142.54 REMARK 500 ASN A 62 49.17 -166.67 REMARK 500 ASN A 211 43.18 39.21 REMARK 500 GLU A 213 -19.21 -49.62 REMARK 500 LYS B 48 -115.26 49.72 REMARK 500 ASN B 50 41.72 -86.55 REMARK 500 MSE B 56 66.68 -118.73 REMARK 500 SER B 61 -63.69 -143.94 REMARK 500 ASN B 62 45.93 -168.97 REMARK 500 LEU B 101 -39.04 -32.07 REMARK 500 LYS B 177 -70.87 -48.48 REMARK 500 GLU B 213 -14.89 -49.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 249 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90844 RELATED DB: TARGETDB DBREF 3P52 A 1 246 UNP Q9PPB0 NADE_CAMJE 1 246 DBREF 3P52 B 1 246 UNP Q9PPB0 NADE_CAMJE 1 246 SEQADV 3P52 ASN A -2 UNP Q9PPB0 EXPRESSION TAG SEQADV 3P52 SER A -1 UNP Q9PPB0 EXPRESSION TAG SEQADV 3P52 ALA A 0 UNP Q9PPB0 EXPRESSION TAG SEQADV 3P52 ASN B -2 UNP Q9PPB0 EXPRESSION TAG SEQADV 3P52 SER B -1 UNP Q9PPB0 EXPRESSION TAG SEQADV 3P52 ALA B 0 UNP Q9PPB0 EXPRESSION TAG SEQRES 1 A 249 ASN SER ALA MSE ASP TRP GLN LYS ILE THR GLU LYS MSE SEQRES 2 A 249 CYS ASP PHE ILE GLN GLU LYS VAL LYS ASN SER GLN SER SEQRES 3 A 249 GLN GLY VAL VAL LEU GLY LEU SER GLY GLY ILE ASP SER SEQRES 4 A 249 ALA LEU VAL ALA THR LEU CYS LYS ARG ALA LEU LYS GLU SEQRES 5 A 249 ASN VAL PHE ALA LEU LEU MSE PRO THR GLN ILE SER ASN SEQRES 6 A 249 LYS ALA ASN LEU GLU ASP ALA LEU ARG LEU CYS ALA ASP SEQRES 7 A 249 LEU ASN LEU GLU TYR LYS ILE ILE GLU ILE GLN SER ILE SEQRES 8 A 249 LEU ASP ALA PHE ILE LYS GLN SER GLU ASN THR THR LEU SEQRES 9 A 249 VAL SER LEU GLY ASN PHE ALA ALA ARG ILE ARG MSE SER SEQRES 10 A 249 LEU LEU TYR ASP TYR SER ALA LEU LYS ASN SER LEU VAL SEQRES 11 A 249 ILE GLY THR SER ASN LYS SER GLU LEU LEU LEU GLY TYR SEQRES 12 A 249 GLY THR ILE TYR GLY ASP LEU ALA CYS ALA PHE ASN PRO SEQRES 13 A 249 ILE GLY SER LEU TYR LYS SER GLU ILE TYR ALA LEU ALA SEQRES 14 A 249 LYS TYR LEU ASN LEU HIS GLU ASN PHE ILE LYS LYS ALA SEQRES 15 A 249 PRO SER ALA ASP LEU TRP GLU ASN GLN SER ASP GLU ALA SEQRES 16 A 249 ASP LEU GLY PHE SER TYR THR LYS ILE ASP GLU GLY LEU SEQRES 17 A 249 LYS ALA LEU GLU THR ASN ASP GLU LYS LEU LEU ARG THR SEQRES 18 A 249 LEU ASP PRO SER LEU ILE ALA MSE LEU LYS ASN ARG MSE SEQRES 19 A 249 GLN LYS ASN ALA PHE LYS GLY LYS MSE PRO GLU ILE LEU SEQRES 20 A 249 GLU ILE SEQRES 1 B 249 ASN SER ALA MSE ASP TRP GLN LYS ILE THR GLU LYS MSE SEQRES 2 B 249 CYS ASP PHE ILE GLN GLU LYS VAL LYS ASN SER GLN SER SEQRES 3 B 249 GLN GLY VAL VAL LEU GLY LEU SER GLY GLY ILE ASP SER SEQRES 4 B 249 ALA LEU VAL ALA THR LEU CYS LYS ARG ALA LEU LYS GLU SEQRES 5 B 249 ASN VAL PHE ALA LEU LEU MSE PRO THR GLN ILE SER ASN SEQRES 6 B 249 LYS ALA ASN LEU GLU ASP ALA LEU ARG LEU CYS ALA ASP SEQRES 7 B 249 LEU ASN LEU GLU TYR LYS ILE ILE GLU ILE GLN SER ILE SEQRES 8 B 249 LEU ASP ALA PHE ILE LYS GLN SER GLU ASN THR THR LEU SEQRES 9 B 249 VAL SER LEU GLY ASN PHE ALA ALA ARG ILE ARG MSE SER SEQRES 10 B 249 LEU LEU TYR ASP TYR SER ALA LEU LYS ASN SER LEU VAL SEQRES 11 B 249 ILE GLY THR SER ASN LYS SER GLU LEU LEU LEU GLY TYR SEQRES 12 B 249 GLY THR ILE TYR GLY ASP LEU ALA CYS ALA PHE ASN PRO SEQRES 13 B 249 ILE GLY SER LEU TYR LYS SER GLU ILE TYR ALA LEU ALA SEQRES 14 B 249 LYS TYR LEU ASN LEU HIS GLU ASN PHE ILE LYS LYS ALA SEQRES 15 B 249 PRO SER ALA ASP LEU TRP GLU ASN GLN SER ASP GLU ALA SEQRES 16 B 249 ASP LEU GLY PHE SER TYR THR LYS ILE ASP GLU GLY LEU SEQRES 17 B 249 LYS ALA LEU GLU THR ASN ASP GLU LYS LEU LEU ARG THR SEQRES 18 B 249 LEU ASP PRO SER LEU ILE ALA MSE LEU LYS ASN ARG MSE SEQRES 19 B 249 GLN LYS ASN ALA PHE LYS GLY LYS MSE PRO GLU ILE LEU SEQRES 20 B 249 GLU ILE MODRES 3P52 MSE A 1 MET SELENOMETHIONINE MODRES 3P52 MSE A 10 MET SELENOMETHIONINE MODRES 3P52 MSE A 56 MET SELENOMETHIONINE MODRES 3P52 MSE A 113 MET SELENOMETHIONINE MODRES 3P52 MSE A 226 MET SELENOMETHIONINE MODRES 3P52 MSE A 231 MET SELENOMETHIONINE MODRES 3P52 MSE A 240 MET SELENOMETHIONINE MODRES 3P52 MSE B 1 MET SELENOMETHIONINE MODRES 3P52 MSE B 10 MET SELENOMETHIONINE MODRES 3P52 MSE B 56 MET SELENOMETHIONINE MODRES 3P52 MSE B 113 MET SELENOMETHIONINE MODRES 3P52 MSE B 226 MET SELENOMETHIONINE MODRES 3P52 MSE B 231 MET SELENOMETHIONINE MODRES 3P52 MSE B 240 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 10 8 HET MSE A 56 8 HET MSE A 113 8 HET MSE A 226 8 HET MSE A 231 8 HET MSE A 240 8 HET MSE B 1 8 HET MSE B 10 8 HET MSE B 56 8 HET MSE B 113 8 HET MSE B 226 8 HET MSE B 231 8 HET MSE B 240 8 HET NO3 A 247 4 HET NO3 B 247 4 HET NO3 B 248 4 HET NO3 B 249 4 HETNAM MSE SELENOMETHIONINE HETNAM NO3 NITRATE ION FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 NO3 4(N O3 1-) FORMUL 7 HOH *65(H2 O) HELIX 1 1 ASP A 2 ASN A 20 1 19 HELIX 2 2 GLY A 33 LYS A 48 1 16 HELIX 3 3 LYS A 63 ASN A 77 1 15 HELIX 4 4 ILE A 85 LYS A 94 1 10 HELIX 5 5 THR A 100 LYS A 123 1 24 HELIX 6 6 ASN A 132 GLY A 139 1 8 HELIX 7 7 TYR A 158 LEU A 169 1 12 HELIX 8 8 HIS A 172 LYS A 178 1 7 HELIX 9 9 THR A 199 THR A 210 1 12 HELIX 10 10 ASP A 212 LEU A 219 1 8 HELIX 11 11 ASP A 220 ASN A 234 1 15 HELIX 12 12 ALA A 235 LYS A 239 5 5 HELIX 13 13 ASP B 2 ASN B 20 1 19 HELIX 14 14 GLY B 33 LYS B 48 1 16 HELIX 15 15 LYS B 63 ASN B 77 1 15 HELIX 16 16 ILE B 85 LYS B 94 1 10 HELIX 17 17 THR B 100 LYS B 123 1 24 HELIX 18 18 ASN B 132 GLY B 139 1 8 HELIX 19 19 TYR B 158 LEU B 169 1 12 HELIX 20 20 HIS B 172 LYS B 178 1 7 HELIX 21 21 THR B 199 THR B 210 1 12 HELIX 22 22 ASP B 212 LEU B 219 1 8 HELIX 23 23 ASP B 220 ASN B 234 1 15 HELIX 24 24 ALA B 235 LYS B 239 5 5 SHEET 1 A 4 GLU A 79 ILE A 82 0 SHEET 2 A 4 VAL A 51 LEU A 55 1 N LEU A 55 O LYS A 81 SHEET 3 A 4 GLY A 25 GLY A 29 1 N LEU A 28 O LEU A 54 SHEET 4 A 4 SER A 125 VAL A 127 1 O LEU A 126 N VAL A 27 SHEET 1 B 2 PHE A 151 ASN A 152 0 SHEET 2 B 2 GLU B 242 ILE B 243 1 O GLU B 242 N ASN A 152 SHEET 1 C 2 GLU A 242 ILE A 243 0 SHEET 2 C 2 PHE B 151 ASN B 152 1 O ASN B 152 N GLU A 242 SHEET 1 D 4 GLU B 79 ILE B 82 0 SHEET 2 D 4 VAL B 51 LEU B 55 1 N LEU B 55 O LYS B 81 SHEET 3 D 4 GLY B 25 GLY B 29 1 N LEU B 28 O LEU B 54 SHEET 4 D 4 SER B 125 VAL B 127 1 O LEU B 126 N VAL B 27 LINK C ALA A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C LYS A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N CYS A 11 1555 1555 1.33 LINK C LEU A 55 N MSE A 56 1555 1555 1.32 LINK C MSE A 56 N PRO A 57 1555 1555 1.33 LINK C ARG A 112 N MSE A 113 1555 1555 1.34 LINK C MSE A 113 N SER A 114 1555 1555 1.33 LINK C ALA A 225 N MSE A 226 1555 1555 1.32 LINK C MSE A 226 N LEU A 227 1555 1555 1.33 LINK C ARG A 230 N MSE A 231 1555 1555 1.33 LINK C MSE A 231 N GLN A 232 1555 1555 1.33 LINK C LYS A 239 N MSE A 240 1555 1555 1.34 LINK C MSE A 240 N PRO A 241 1555 1555 1.35 LINK C MSE B 1 N ASP B 2 1555 1555 1.33 LINK C LYS B 9 N MSE B 10 1555 1555 1.33 LINK C MSE B 10 N CYS B 11 1555 1555 1.33 LINK C LEU B 55 N MSE B 56 1555 1555 1.31 LINK C MSE B 56 N PRO B 57 1555 1555 1.31 LINK C ARG B 112 N MSE B 113 1555 1555 1.33 LINK C MSE B 113 N SER B 114 1555 1555 1.33 LINK C ALA B 225 N MSE B 226 1555 1555 1.32 LINK C MSE B 226 N LEU B 227 1555 1555 1.32 LINK C ARG B 230 N MSE B 231 1555 1555 1.33 LINK C MSE B 231 N GLN B 232 1555 1555 1.33 LINK C LYS B 239 N MSE B 240 1555 1555 1.33 LINK C MSE B 240 N PRO B 241 1555 1555 1.34 SITE 1 AC1 6 LEU A 30 SER A 31 MSE A 56 PRO A 57 SITE 2 AC1 6 ARG A 112 HOH A 249 SITE 1 AC2 7 LEU B 30 SER B 31 LEU B 55 MSE B 56 SITE 2 AC2 7 PRO B 57 ARG B 112 HOH B 252 SITE 1 AC3 4 ARG A 71 ASN A 174 ALA B 74 ASP B 75 SITE 1 AC4 4 ALA A 74 ARG B 71 HIS B 172 ASN B 174 CRYST1 120.945 120.945 91.795 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008268 0.004774 0.000000 0.00000 SCALE2 0.000000 0.009547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010894 0.00000