HEADER VIRAL PROTEIN 07-OCT-10 3P54 TITLE CRYSTAL STRUCTURE OF THE JAPANESE ENCEPHALITIS VIRUS ENVELOPE PROTEIN, TITLE 2 STRAIN SA-14-14-2. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: JEV ENVELOPE RESIDUES 295-700; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JAPANESE ENCEPHALITIS VIRUS; SOURCE 3 ORGANISM_TAXID: 11072; SOURCE 4 STRAIN: SA-14-14-2; SOURCE 5 GENE: ENVELOPE PROTEIN E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A(+) KEYWDS VIRAL ENVELOPE PROTEINS, STRUCTURAL GENOMICS, FUSION PEPTIDE, KEYWDS 2 ANTIBODY EPITOPES, FLAVIVIRUS, JAPANESE ENCEPHALITIS VIRUS, CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.C.LUCA,C.A.NELSON,J.P.ABIMANSOUR,M.S.DIAMOND,D.H.FREMONT,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 08-FEB-12 3P54 1 JRNL REMARK REVDAT 2 28-DEC-11 3P54 1 JRNL VERSN REVDAT 1 08-DEC-10 3P54 0 JRNL AUTH V.C.LUCA,J.ABIMANSOUR,C.A.NELSON,D.H.FREMONT JRNL TITL CRYSTAL STRUCTURE OF THE JAPANESE ENCEPHALITIS VIRUS JRNL TITL 2 ENVELOPE PROTEIN. JRNL REF J.VIROL. V. 86 2337 2012 JRNL REFN ISSN 0022-538X JRNL PMID 22156523 JRNL DOI 10.1128/JVI.06072-11 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.210 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 25663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.1909 - 4.3583 0.99 3072 160 0.1621 0.1879 REMARK 3 2 4.3583 - 3.4609 0.93 2752 146 0.1601 0.2237 REMARK 3 3 3.4609 - 3.0239 0.99 2907 150 0.1832 0.2196 REMARK 3 4 3.0239 - 2.7476 0.97 2840 148 0.1868 0.2497 REMARK 3 5 2.7476 - 2.5508 0.95 2775 147 0.1764 0.2256 REMARK 3 6 2.5508 - 2.4005 0.94 2722 140 0.1835 0.2149 REMARK 3 7 2.4005 - 2.2803 0.90 2621 141 0.2046 0.2490 REMARK 3 8 2.2803 - 2.1811 0.77 2220 116 0.2569 0.3443 REMARK 3 9 2.1811 - 2.0971 0.86 2470 136 0.2037 0.2294 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 37.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56140 REMARK 3 B22 (A**2) : 1.05970 REMARK 3 B33 (A**2) : -0.49820 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3117 REMARK 3 ANGLE : 1.098 4218 REMARK 3 CHIRALITY : 0.074 475 REMARK 3 PLANARITY : 0.005 543 REMARK 3 DIHEDRAL : 11.732 1104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 1:12) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2651 -20.0399 -40.0904 REMARK 3 T TENSOR REMARK 3 T11: 0.4320 T22: 0.3623 REMARK 3 T33: 0.1996 T12: -0.0067 REMARK 3 T13: 0.0524 T23: 0.1205 REMARK 3 L TENSOR REMARK 3 L11: 2.8977 L22: 3.5312 REMARK 3 L33: 0.0893 L12: 0.0074 REMARK 3 L13: -0.4366 L23: 0.1805 REMARK 3 S TENSOR REMARK 3 S11: -0.2192 S12: -0.7063 S13: -0.1639 REMARK 3 S21: 1.1920 S22: -0.2984 S23: -0.0094 REMARK 3 S31: -0.0514 S32: 0.3450 S33: 0.3328 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 13:29) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0534 -8.8960 -39.8521 REMARK 3 T TENSOR REMARK 3 T11: 0.4233 T22: 0.3835 REMARK 3 T33: 0.3075 T12: 0.0340 REMARK 3 T13: 0.1330 T23: 0.0731 REMARK 3 L TENSOR REMARK 3 L11: 0.4459 L22: 3.1392 REMARK 3 L33: 2.9081 L12: -0.0847 REMARK 3 L13: -1.0830 L23: 1.0952 REMARK 3 S TENSOR REMARK 3 S11: 0.0831 S12: 0.0840 S13: -0.4106 REMARK 3 S21: 0.3112 S22: -0.5740 S23: 0.8396 REMARK 3 S31: 0.7908 S32: 0.3107 S33: 0.5913 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain A and resid 30:44) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4587 -11.7127 -45.1385 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.1120 REMARK 3 T33: 0.1601 T12: 0.0025 REMARK 3 T13: 0.0606 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.6581 L22: 4.8706 REMARK 3 L33: 3.1588 L12: 1.3292 REMARK 3 L13: -2.2639 L23: -1.2239 REMARK 3 S TENSOR REMARK 3 S11: 0.2099 S12: 0.0493 S13: -0.0119 REMARK 3 S21: 0.7030 S22: 0.2174 S23: 0.8033 REMARK 3 S31: -0.0360 S32: -0.1780 S33: -0.2741 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (chain A and resid 45:130) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3797 -18.9776 16.8508 REMARK 3 T TENSOR REMARK 3 T11: 0.9930 T22: 0.6711 REMARK 3 T33: 0.2287 T12: -0.0737 REMARK 3 T13: -0.0208 T23: 0.1620 REMARK 3 L TENSOR REMARK 3 L11: -0.6735 L22: -0.4069 REMARK 3 L33: 7.5295 L12: -0.1645 REMARK 3 L13: -0.4056 L23: -1.3078 REMARK 3 S TENSOR REMARK 3 S11: 0.1079 S12: 0.2068 S13: -0.0949 REMARK 3 S21: -0.1224 S22: -0.2542 S23: 0.0331 REMARK 3 S31: -1.4869 S32: 0.4755 S33: 0.1762 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (chain A and resid 131:150) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7301 -10.6934 -35.0075 REMARK 3 T TENSOR REMARK 3 T11: 0.5966 T22: 0.3786 REMARK 3 T33: 0.1529 T12: 0.0739 REMARK 3 T13: -0.0764 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 2.9290 L22: 3.6650 REMARK 3 L33: 1.2274 L12: -0.4444 REMARK 3 L13: 0.5425 L23: 1.1627 REMARK 3 S TENSOR REMARK 3 S11: -0.1267 S12: -0.9437 S13: -0.0247 REMARK 3 S21: 1.1693 S22: 0.3940 S23: -0.3415 REMARK 3 S31: 0.0073 S32: 0.2481 S33: -0.0734 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (chain A and resid 151:192) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6650 -5.9465 -39.0664 REMARK 3 T TENSOR REMARK 3 T11: 0.4617 T22: 0.2864 REMARK 3 T33: 0.0843 T12: 0.0289 REMARK 3 T13: -0.0646 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 2.5465 L22: 3.0829 REMARK 3 L33: 1.3026 L12: -0.4132 REMARK 3 L13: 1.2491 L23: -1.4605 REMARK 3 S TENSOR REMARK 3 S11: -0.1158 S12: -0.4117 S13: 0.2743 REMARK 3 S21: 1.1636 S22: 0.3465 S23: -0.6869 REMARK 3 S31: -0.4290 S32: 0.1244 S33: -0.0312 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (chain A and resid 193:201) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9853 -6.4614 -17.5157 REMARK 3 T TENSOR REMARK 3 T11: 1.3643 T22: 1.6079 REMARK 3 T33: 0.9064 T12: 0.3339 REMARK 3 T13: 0.0515 T23: -0.1521 REMARK 3 L TENSOR REMARK 3 L11: 0.6988 L22: 4.8893 REMARK 3 L33: 0.1887 L12: -1.3016 REMARK 3 L13: -0.0510 L23: 0.7611 REMARK 3 S TENSOR REMARK 3 S11: -0.1245 S12: -0.5562 S13: -0.0128 REMARK 3 S21: -0.3711 S22: 0.5879 S23: -0.3571 REMARK 3 S31: -0.1589 S32: -0.8290 S33: -0.1466 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (chain A and resid 202:213) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4807 -17.9377 -9.5814 REMARK 3 T TENSOR REMARK 3 T11: 1.5944 T22: 0.7978 REMARK 3 T33: 0.1946 T12: 0.4010 REMARK 3 T13: 0.0060 T23: 0.0989 REMARK 3 L TENSOR REMARK 3 L11: 1.1411 L22: 1.3038 REMARK 3 L33: 0.0643 L12: -0.9268 REMARK 3 L13: -0.2158 L23: 0.1489 REMARK 3 S TENSOR REMARK 3 S11: -0.0654 S12: 0.1489 S13: 0.0460 REMARK 3 S21: -0.4816 S22: -0.2474 S23: -0.2890 REMARK 3 S31: 1.3131 S32: 0.5980 S33: 0.3424 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (chain A and resid 214:234) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0272 -12.7144 2.1295 REMARK 3 T TENSOR REMARK 3 T11: 0.9750 T22: 0.5224 REMARK 3 T33: 0.2094 T12: 0.1044 REMARK 3 T13: 0.0834 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.5402 L22: 2.9836 REMARK 3 L33: 5.1112 L12: 0.9702 REMARK 3 L13: -1.1803 L23: -3.9009 REMARK 3 S TENSOR REMARK 3 S11: 0.4086 S12: -0.1040 S13: 0.0408 REMARK 3 S21: 1.4783 S22: -0.1045 S23: 0.5619 REMARK 3 S31: -1.4264 S32: 0.4125 S33: -0.2419 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (chain A and resid 235:265) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9320 -26.5434 12.7128 REMARK 3 T TENSOR REMARK 3 T11: 0.9489 T22: 0.7143 REMARK 3 T33: 0.1534 T12: 0.0095 REMARK 3 T13: 0.0282 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.3122 L22: 1.1748 REMARK 3 L33: 0.9010 L12: 0.1323 REMARK 3 L13: 0.4697 L23: -0.3433 REMARK 3 S TENSOR REMARK 3 S11: 0.1959 S12: -0.0514 S13: -0.2469 REMARK 3 S21: 0.1244 S22: -0.4901 S23: 0.0252 REMARK 3 S31: 0.3898 S32: 0.5805 S33: 0.4701 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (chain A and resid 266:278) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9472 -17.5718 -14.6068 REMARK 3 T TENSOR REMARK 3 T11: 1.4754 T22: 0.9806 REMARK 3 T33: 0.2481 T12: 0.1399 REMARK 3 T13: -0.0046 T23: -0.0781 REMARK 3 L TENSOR REMARK 3 L11: 0.4720 L22: 1.3687 REMARK 3 L33: 0.0847 L12: 0.0843 REMARK 3 L13: 0.1047 L23: -0.2837 REMARK 3 S TENSOR REMARK 3 S11: 0.1320 S12: 0.2493 S13: 0.0403 REMARK 3 S21: -0.6595 S22: -0.4585 S23: 0.0202 REMARK 3 S31: 0.0021 S32: 0.3782 S33: 0.2951 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (chain A and resid 279:284) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0857 -13.8743 -23.1003 REMARK 3 T TENSOR REMARK 3 T11: 2.1697 T22: 0.7623 REMARK 3 T33: 0.5798 T12: 0.2088 REMARK 3 T13: 0.4443 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 4.2085 L22: 2.3951 REMARK 3 L33: 2.3820 L12: -1.6873 REMARK 3 L13: -3.1636 L23: 1.3770 REMARK 3 S TENSOR REMARK 3 S11: -0.2961 S12: 0.2549 S13: -0.1606 REMARK 3 S21: 2.0058 S22: 0.4491 S23: 0.1604 REMARK 3 S31: 0.5666 S32: -0.7120 S33: 0.0389 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (chain A and resid 285:302) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2492 -4.1821 -48.2292 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.1002 REMARK 3 T33: 0.1967 T12: 0.0747 REMARK 3 T13: 0.0047 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.9277 L22: 0.4460 REMARK 3 L33: 3.2973 L12: -0.4000 REMARK 3 L13: -1.5394 L23: 1.1237 REMARK 3 S TENSOR REMARK 3 S11: 0.1414 S12: -0.0701 S13: 0.2945 REMARK 3 S21: 0.1054 S22: 0.2146 S23: -0.1771 REMARK 3 S31: -0.3320 S32: -0.0158 S33: -0.2824 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (chain A and resid 303:308) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8754 -20.0506 -67.9210 REMARK 3 T TENSOR REMARK 3 T11: 0.0911 T22: 0.1094 REMARK 3 T33: 0.1726 T12: 0.0164 REMARK 3 T13: 0.0200 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 0.1814 L22: 1.0946 REMARK 3 L33: 0.9046 L12: 0.3535 REMARK 3 L13: 0.1042 L23: 0.1392 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: 0.1567 S13: -0.2726 REMARK 3 S21: -0.1519 S22: -0.2931 S23: 0.0673 REMARK 3 S31: 0.0092 S32: 0.0382 S33: 0.2507 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (chain A and resid 309:386) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5023 -22.8521 -58.7873 REMARK 3 T TENSOR REMARK 3 T11: 0.0304 T22: 0.0404 REMARK 3 T33: 0.1139 T12: -0.0098 REMARK 3 T13: -0.0028 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.1480 L22: 1.9535 REMARK 3 L33: 0.7987 L12: -0.2329 REMARK 3 L13: -0.1355 L23: -0.0663 REMARK 3 S TENSOR REMARK 3 S11: 0.0514 S12: -0.0278 S13: 0.0410 REMARK 3 S21: 0.0042 S22: -0.0620 S23: -0.1120 REMARK 3 S31: -0.0027 S32: 0.0105 S33: 0.0063 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (chain A and resid 387:404) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7602 -30.9191 -60.2372 REMARK 3 T TENSOR REMARK 3 T11: -0.1610 T22: -0.0029 REMARK 3 T33: 0.1384 T12: -0.2254 REMARK 3 T13: -0.0768 T23: -0.0749 REMARK 3 L TENSOR REMARK 3 L11: 4.4386 L22: 1.7441 REMARK 3 L33: 2.3977 L12: 1.4869 REMARK 3 L13: -2.4309 L23: -0.7164 REMARK 3 S TENSOR REMARK 3 S11: 0.2915 S12: 0.4357 S13: -0.6561 REMARK 3 S21: -0.5284 S22: -0.6763 S23: 0.0037 REMARK 3 S31: -0.1024 S32: -0.1973 S33: 0.2871 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-10. REMARK 100 THE RCSB ID CODE IS RCSB061967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26920 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.097 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.42700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.2M SODIUM CITRATE, REMARK 280 0.1M TRIS PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.55550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.19900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 121.51900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.55550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.19900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 121.51900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.55550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.19900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 121.51900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.55550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 31.19900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 121.51900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 72320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -61.11100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -62.39800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -61.11100 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -62.39800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 405 REMARK 465 ALA A 406 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 -167.38 -109.87 REMARK 500 THR A 76 -3.35 84.59 REMARK 500 ASN A 134 51.29 -106.44 REMARK 500 HIS A 144 63.08 -69.43 REMARK 500 PHE A 201 173.81 178.92 REMARK 500 SER A 230 89.65 -154.18 REMARK 500 ALA A 247 -97.67 53.78 REMARK 500 SER A 275 -86.88 -131.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I69 RELATED DB: PDB REMARK 900 WEST NILE VIRUS ENVELOPE REMARK 900 RELATED ID: 2HG0 RELATED DB: PDB REMARK 900 WEST NILE VIRUS ENVELOPE REMARK 900 RELATED ID: 1UZG RELATED DB: PDB REMARK 900 DENGUE VIRUS 3 ENVELOPE REMARK 900 RELATED ID: 1OKE RELATED DB: PDB REMARK 900 DENGUE VIRUS 2 ENVELOPE REMARK 900 RELATED ID: 1TG8 RELATED DB: PDB REMARK 900 DENGUE VIRUS 2 ENVELOPE REMARK 900 RELATED ID: 1SVB RELATED DB: PDB REMARK 900 TICK BORNE ENCEPHALITIS VIRUS ENVELOPE REMARK 900 RELATED ID: 2ALA RELATED DB: PDB REMARK 900 SEMLIKI FOREST VIRUS ENVELOPE PROTEIN E1 REMARK 900 RELATED ID: CSGID-IDP00254 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: IDP00254 RELATED DB: TARGETTRACK DBREF 3P54 A 1 406 UNP Q99DQ9 Q99DQ9_9FLAV 295 700 SEQADV 3P54 THR A 177 UNP Q99DQ9 ALA 471 CONFLICT SEQADV 3P54 GLN A 264 UNP Q99DQ9 HIS 558 CONFLICT SEQRES 1 A 406 PHE ASN CYS LEU GLY MET GLY ASN ARG ASP PHE ILE GLU SEQRES 2 A 406 GLY ALA SER GLY ALA THR TRP VAL ASP LEU VAL LEU GLU SEQRES 3 A 406 GLY ASP SER CYS LEU THR ILE MET ALA ASN ASP LYS PRO SEQRES 4 A 406 THR LEU ASP VAL ARG MET ILE ASN ILE GLU ALA SER GLN SEQRES 5 A 406 LEU ALA GLU VAL ARG SER TYR CYS TYR HIS ALA SER VAL SEQRES 6 A 406 THR ASP ILE SER THR VAL ALA ARG CYS PRO THR THR GLY SEQRES 7 A 406 GLU ALA HIS ASN GLU LYS ARG ALA ASP SER SER TYR VAL SEQRES 8 A 406 CYS LYS GLN GLY PHE THR ASP ARG GLY TRP GLY ASN GLY SEQRES 9 A 406 CYS GLY PHE PHE GLY LYS GLY SER ILE ASP THR CYS ALA SEQRES 10 A 406 LYS PHE SER CYS THR SER LYS ALA ILE GLY ARG THR ILE SEQRES 11 A 406 GLN PRO GLU ASN ILE LYS TYR LYS VAL GLY ILE PHE VAL SEQRES 12 A 406 HIS GLY THR THR THR SER GLU ASN HIS GLY ASN TYR SER SEQRES 13 A 406 ALA GLN VAL GLY ALA SER GLN ALA ALA LYS PHE THR VAL SEQRES 14 A 406 THR PRO ASN ALA PRO SER VAL THR LEU LYS LEU GLY ASP SEQRES 15 A 406 TYR GLY GLU VAL THR LEU ASP CYS GLU PRO ARG SER GLY SEQRES 16 A 406 LEU ASN THR GLU ALA PHE TYR VAL MET THR VAL GLY SER SEQRES 17 A 406 LYS SER PHE LEU VAL HIS ARG GLU TRP PHE HIS ASP LEU SEQRES 18 A 406 ALA LEU PRO TRP THR SER PRO SER SER THR ALA TRP ARG SEQRES 19 A 406 ASN ARG GLU LEU LEU MET GLU PHE GLU GLY ALA HIS ALA SEQRES 20 A 406 THR LYS GLN SER VAL VAL ALA LEU GLY SER GLN GLU GLY SEQRES 21 A 406 GLY LEU HIS GLN ALA LEU ALA GLY ALA ILE VAL VAL GLU SEQRES 22 A 406 TYR SER SER SER VAL MET LEU THR SER GLY HIS LEU LYS SEQRES 23 A 406 CYS ARG LEU LYS MET ASP LYS LEU ALA LEU LYS GLY THR SEQRES 24 A 406 THR TYR GLY MET CYS THR GLU LYS PHE SER PHE ALA LYS SEQRES 25 A 406 ASN PRO VAL ASP THR GLY HIS GLY THR VAL VAL ILE GLU SEQRES 26 A 406 LEU SER TYR SER GLY SER ASP GLY PRO CYS LYS ILE PRO SEQRES 27 A 406 ILE VAL SER VAL ALA SER LEU ASN ASP MET THR PRO VAL SEQRES 28 A 406 GLY ARG LEU VAL THR VAL ASN PRO PHE VAL ALA THR SER SEQRES 29 A 406 SER ALA ASN SER LYS VAL LEU VAL GLU MET GLU PRO PRO SEQRES 30 A 406 PHE GLY ASP SER TYR ILE VAL VAL GLY ARG GLY ASP LYS SEQRES 31 A 406 GLN ILE ASN HIS HIS TRP HIS LYS ALA GLY SER THR LEU SEQRES 32 A 406 GLY LYS ALA FORMUL 2 HOH *210(H2 O) HELIX 1 1 ASN A 82 ASP A 87 5 6 HELIX 2 2 GLY A 100 GLY A 104 5 5 HELIX 3 3 ASN A 154 ALA A 161 1 8 HELIX 4 4 GLY A 181 TYR A 183 5 3 HELIX 5 5 PRO A 192 GLY A 195 5 4 HELIX 6 6 ASN A 235 LEU A 238 5 4 HELIX 7 7 GLN A 258 LEU A 266 1 9 HELIX 8 8 ARG A 387 GLN A 391 5 5 SHEET 1 A10 ARG A 9 GLU A 13 0 SHEET 2 A10 CYS A 30 MET A 34 1 O THR A 32 N ILE A 12 SHEET 3 A10 LEU A 41 ALA A 50 -1 O LEU A 41 N ILE A 33 SHEET 4 A10 VAL A 278 LEU A 280 -1 O LEU A 280 N ILE A 48 SHEET 5 A10 ILE A 270 TYR A 274 -1 N GLU A 273 O MET A 279 SHEET 6 A10 LYS A 209 HIS A 214 -1 N SER A 210 O VAL A 272 SHEET 7 A10 PHE A 201 VAL A 206 -1 N MET A 204 O PHE A 211 SHEET 8 A10 GLY A 109 THR A 129 -1 N ARG A 128 O VAL A 203 SHEET 9 A10 ILE A 135 VAL A 143 0 SHEET 10 A10 ALA A 164 VAL A 169 -1 O ALA A 165 N ILE A 141 SHEET 1 B10 TYR A 90 ARG A 99 0 SHEET 2 B10 GLY A 109 THR A 129 -1 O GLY A 111 N THR A 97 SHEET 3 B10 PHE A 201 VAL A 206 -1 O VAL A 203 N ARG A 128 SHEET 4 B10 LYS A 209 HIS A 214 -1 O PHE A 211 N MET A 204 SHEET 5 B10 ILE A 270 TYR A 274 -1 O VAL A 272 N SER A 210 SHEET 6 B10 VAL A 278 LEU A 280 -1 O MET A 279 N GLU A 273 SHEET 7 B10 LEU A 41 ALA A 50 -1 N ILE A 48 O LEU A 280 SHEET 8 B10 ALA A 54 ALA A 72 0 SHEET 9 B10 TRP A 225 SER A 227 -1 O THR A 226 N SER A 58 SHEET 10 B10 SER A 230 ARG A 234 -1 O ARG A 234 N TRP A 225 SHEET 1 C 4 TRP A 20 GLU A 26 0 SHEET 2 C 4 HIS A 284 LYS A 290 -1 O CYS A 287 N LEU A 23 SHEET 3 C 4 GLU A 185 GLU A 191 -1 N THR A 187 O LYS A 290 SHEET 4 C 4 SER A 175 LYS A 179 -1 N LEU A 178 O VAL A 186 SHEET 1 D 2 MET A 240 HIS A 246 0 SHEET 2 D 2 LYS A 249 ALA A 254 -1 O VAL A 253 N GLU A 241 SHEET 1 E 4 PHE A 308 ASP A 316 0 SHEET 2 E 4 VAL A 322 TYR A 328 -1 O SER A 327 N SER A 309 SHEET 3 E 4 SER A 368 GLU A 375 -1 O VAL A 370 N LEU A 326 SHEET 4 E 4 ARG A 353 LEU A 354 -1 N ARG A 353 O GLU A 375 SHEET 1 F 2 CYS A 335 LYS A 336 0 SHEET 2 F 2 PHE A 360 VAL A 361 -1 O VAL A 361 N CYS A 335 SHEET 1 G 4 ASP A 347 PRO A 350 0 SHEET 2 G 4 ILE A 339 SER A 344 -1 N SER A 344 O ASP A 347 SHEET 3 G 4 GLY A 379 VAL A 385 -1 O TYR A 382 N VAL A 342 SHEET 4 G 4 ILE A 392 LYS A 398 -1 O ILE A 392 N VAL A 385 SSBOND 1 CYS A 3 CYS A 30 1555 1555 2.01 SSBOND 2 CYS A 60 CYS A 121 1555 1555 2.04 SSBOND 3 CYS A 74 CYS A 105 1555 1555 2.05 SSBOND 4 CYS A 92 CYS A 116 1555 1555 2.03 SSBOND 5 CYS A 190 CYS A 287 1555 1555 2.04 SSBOND 6 CYS A 304 CYS A 335 1555 1555 2.06 CISPEP 1 GLY A 333 PRO A 334 0 2.66 CRYST1 61.111 62.398 243.038 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016364 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004115 0.00000