HEADER RNA 08-OCT-10 3P59 TITLE FIRST CRYSTAL STRUCTURE OF A RNA NANOSQUARE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*(5BU) COMPND 3 P*G)-3'); COMPND 4 CHAIN: A, C, E, G; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*CP*CP*GP*GP*CP*AP*GP*CP*CP*U)-3'); COMPND 8 CHAIN: B, D, F, H; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS RNA SQUARE, RNA EXPDTA X-RAY DIFFRACTION AUTHOR S.DIBROV,T.HERMANN,J.MCLEAN,J.PARSONS REVDAT 4 21-FEB-24 3P59 1 REMARK LINK REVDAT 3 04-MAY-11 3P59 1 JRNL REVDAT 2 20-APR-11 3P59 1 JRNL REVDAT 1 06-APR-11 3P59 0 JRNL AUTH S.M.DIBROV,J.MCLEAN,J.PARSONS,T.HERMANN JRNL TITL SELF-ASSEMBLING RNA SQUARE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 6405 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21464284 JRNL DOI 10.1073/PNAS.1017999108 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 3 NUMBER OF REFLECTIONS : 25640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8348 - 4.5249 0.95 3042 146 0.1186 0.1645 REMARK 3 2 4.5249 - 3.5951 0.95 3039 145 0.1152 0.1642 REMARK 3 3 3.5951 - 3.1416 0.95 3043 149 0.1394 0.1561 REMARK 3 4 3.1416 - 2.8549 0.95 3040 141 0.1717 0.1777 REMARK 3 5 2.8549 - 2.6505 0.94 2993 203 0.2255 0.2841 REMARK 3 6 2.6505 - 2.4944 0.95 3002 151 0.2413 0.3194 REMARK 3 7 2.4944 - 2.3695 0.94 3019 151 0.2408 0.2582 REMARK 3 8 2.3695 - 2.2665 0.67 2158 116 0.2683 0.3079 REMARK 3 9 2.2665 - 2.1793 0.30 946 66 0.2730 0.2808 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 34.40 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2372 REMARK 3 ANGLE : 1.114 3741 REMARK 3 CHIRALITY : 0.058 478 REMARK 3 PLANARITY : 0.009 98 REMARK 3 DIHEDRAL : 21.687 1141 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 17.6206 -26.3046 10.6335 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1453 REMARK 3 T33: 0.0085 T12: -0.0039 REMARK 3 T13: -0.0231 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.3323 L22: 0.4423 REMARK 3 L33: -0.4430 L12: 0.2191 REMARK 3 L13: 0.0498 L23: 0.1218 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: 0.0525 S13: 0.0085 REMARK 3 S21: -0.0279 S22: 0.1192 S23: -0.0171 REMARK 3 S31: 0.0807 S32: -0.0062 S33: 0.1480 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 173.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9202752 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25640 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.157 REMARK 200 RESOLUTION RANGE LOW (A) : 25.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 200 DATA REDUNDANCY : 30.20 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 49.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 30.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM MAGNESIUM CHLORIDE, 50 MM REMARK 280 SODIUM CACODYLATE, 10MM HEXAMMINECOBALT (III) CHLORIDE, 50 MM REMARK 280 KCL, 17% PEG 400, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.08933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.17867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.17867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.08933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 24 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U G 56 REMARK 465 A G 57 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 A A 57 O HOH A 64 1.85 REMARK 500 O HOH A 10 O HOH B 53 1.93 REMARK 500 O HOH B 27 O HOH B 62 1.95 REMARK 500 N7 G A 52 O HOH A 9 1.95 REMARK 500 O HOH F 77 O HOH F 83 2.05 REMARK 500 N4 C B 108 O HOH B 25 2.11 REMARK 500 N2 G E 51 O2 C F 112 2.12 REMARK 500 O2' C D 105 O HOH D 15 2.13 REMARK 500 OP1 G D 107 O HOH D 32 2.18 REMARK 500 OP2 A A 54 O HOH A 30 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 85 O HOH C 87 1445 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 51 N3 - C4 - N9 ANGL. DEV. = -4.5 DEGREES REMARK 500 C B 105 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 G B 106 C8 - N9 - C4 ANGL. DEV. = 4.0 DEGREES REMARK 500 G B 106 N9 - C4 - C5 ANGL. DEV. = -3.0 DEGREES REMARK 500 C B 108 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 G C 48 N3 - C4 - C5 ANGL. DEV. = 3.2 DEGREES REMARK 500 G C 48 C8 - N9 - C4 ANGL. DEV. = 2.8 DEGREES REMARK 500 G E 52 N3 - C4 - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 G F 110 N9 - C4 - C5 ANGL. DEV. = 3.0 DEGREES REMARK 500 G F 110 N3 - C4 - N9 ANGL. DEV. = -4.9 DEGREES REMARK 500 G F 110 C5 - C6 - O6 ANGL. DEV. = 5.2 DEGREES REMARK 500 C F 111 N1 - C2 - O2 ANGL. DEV. = 3.8 DEGREES REMARK 500 G G 49 C6 - C5 - N7 ANGL. DEV. = 3.6 DEGREES REMARK 500 G G 49 C4 - N9 - C1' ANGL. DEV. = -8.0 DEGREES REMARK 500 C H 112 C6 - N1 - C2 ANGL. DEV. = -2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 61 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 55 O2 REMARK 620 2 HOH A 63 O 76.1 REMARK 620 3 HOH A 96 O 72.1 142.4 REMARK 620 4 HOH B 46 O 109.3 114.7 94.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 61 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH E 64 O REMARK 620 2 HOH E 109 O 48.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 61 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO C 61 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO E 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 61 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO F 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO G 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO G 61 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO H 1 DBREF 3P59 A 46 60 PDB 3P59 3P59 46 60 DBREF 3P59 C 46 60 PDB 3P59 3P59 46 60 DBREF 3P59 E 46 60 PDB 3P59 3P59 46 60 DBREF 3P59 G 46 60 PDB 3P59 3P59 46 60 DBREF 3P59 B 104 113 PDB 3P59 3P59 104 113 DBREF 3P59 D 104 113 PDB 3P59 3P59 104 113 DBREF 3P59 F 104 113 PDB 3P59 3P59 104 113 DBREF 3P59 H 104 113 PDB 3P59 3P59 104 113 SEQRES 1 A 15 C C G G A G G A A C U A C SEQRES 2 A 15 5BU G SEQRES 1 B 10 C C G G C A G C C U SEQRES 1 C 15 C C G G A G G A A C U A C SEQRES 2 C 15 5BU G SEQRES 1 D 10 C C G G C A G C C U SEQRES 1 E 15 C C G G A G G A A C U A C SEQRES 2 E 15 5BU G SEQRES 1 F 10 C C G G C A G C C U SEQRES 1 G 15 C C G G A G G A A C U A C SEQRES 2 G 15 5BU G SEQRES 1 H 10 C C G G C A G C C U MODRES 3P59 5BU A 59 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 3P59 5BU C 59 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 3P59 5BU E 59 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE MODRES 3P59 5BU G 59 U 5-BROMO-URIDINE-5'-MONOPHOSPHATE HET 5BU A 59 21 HET 5BU C 59 21 HET 5BU E 59 21 HET 5BU G 59 21 HET NCO A 1 7 HET MG A 61 1 HET NCO B 1 7 HET NCO C 1 7 HET NCO C 61 7 HET NCO D 1 7 HET NCO E 1 7 HET MG E 61 1 HET NCO F 1 7 HET NCO G 1 7 HET NCO G 61 7 HET NCO H 1 7 HETNAM 5BU 5-BROMO-URIDINE-5'-MONOPHOSPHATE HETNAM NCO COBALT HEXAMMINE(III) HETNAM MG MAGNESIUM ION FORMUL 1 5BU 4(C9 H12 BR N2 O9 P) FORMUL 9 NCO 10(CO H18 N6 3+) FORMUL 10 MG 2(MG 2+) FORMUL 21 HOH *118(H2 O) LINK O3' C A 58 P 5BU A 59 1555 1555 1.60 LINK O3' 5BU A 59 P G A 60 1555 1555 1.60 LINK O3' C C 58 P 5BU C 59 1555 1555 1.61 LINK O3' 5BU C 59 P G C 60 1555 1555 1.61 LINK O3' C E 58 P 5BU E 59 1555 1555 1.60 LINK O3' 5BU E 59 P G E 60 1555 1555 1.60 LINK O3' C G 58 P 5BU G 59 1555 1555 1.60 LINK O3' 5BU G 59 P G G 60 1555 1555 1.61 LINK O2 C A 55 MG MG A 61 1555 1555 2.37 LINK MG MG A 61 O HOH A 63 1555 1555 2.16 LINK MG MG A 61 O HOH A 96 1555 1555 2.96 LINK MG MG A 61 O HOH B 46 1555 1555 2.07 LINK MG MG E 61 O HOH E 64 1555 1555 2.97 LINK MG MG E 61 O HOH E 109 1555 1555 2.37 SITE 1 AC1 3 C A 47 G A 48 G A 49 SITE 1 AC2 5 C A 55 HOH A 62 HOH A 63 HOH A 96 SITE 2 AC2 5 HOH B 46 SITE 1 AC3 11 5BU A 59 G A 60 HOH B 19 HOH B 25 SITE 2 AC3 11 HOH B 62 HOH B 79 C B 105 G B 106 SITE 3 AC3 11 G B 107 C B 108 C G 46 SITE 1 AC4 6 HOH C 11 C C 47 G C 48 G C 49 SITE 2 AC4 6 HOH C 75 HOH C 95 SITE 1 AC5 3 A C 53 A C 54 HOH C 62 SITE 1 AC6 5 HOH D 66 C D 105 G D 106 G D 107 SITE 2 AC6 5 C D 108 SITE 1 AC7 3 C E 47 G E 48 G E 49 SITE 1 AC8 3 G E 51 HOH E 64 HOH E 109 SITE 1 AC9 6 C C 46 5BU E 59 G E 60 C F 105 SITE 2 AC9 6 G F 106 G F 107 SITE 1 BC1 3 C G 47 G G 48 G G 49 SITE 1 BC2 4 HOH G 34 G G 51 G G 52 A H 109 SITE 1 BC3 5 C E 47 G G 60 C H 105 G H 106 SITE 2 BC3 5 G H 107 CRYST1 62.378 62.378 126.268 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016031 0.009256 0.000000 0.00000 SCALE2 0.000000 0.018511 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007920 0.00000