HEADER TRANSFERASE/HYDROLASE 11-OCT-10 3P71 TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF LCMT-1 AND PP2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE CARBOXYL METHYLTRANSFERASE 1; COMPND 3 CHAIN: T; COMPND 4 SYNONYM: PROTEIN-LEUCINE O-METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SERINE/THREONINE-PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNIT COMPND 10 ALPHA ISOFORM; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: CATALYTIC SUBUNIT ALPHA ISOFORM; COMPND 13 SYNONYM: PP2A-ALPHA, REPLICATION PROTEIN C, RP-C; COMPND 14 EC: 3.1.3.16; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CGI-68, LCMT, LCMT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: PPP2CA; SOURCE 16 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7101; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: BACULOVIRUS KEYWDS LEUCINE CARBOXYMETHYLTRANSFERASE-1, SERINE/THREONINE PROTEIN KEYWDS 2 KEYWDS 2 PHOSPHATASE 2A, METHYLTRANSFERASE, S-ADENOSYL-L-METHIONINE, KEYWDS 3 TRANSFERASE-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.XING,V.STANEVICH,K.A.SATYSHUR,L.JIANG REVDAT 4 06-SEP-23 3P71 1 REMARK SEQADV LINK REVDAT 3 15-OCT-14 3P71 1 AUTHOR REVDAT 2 08-OCT-14 3P71 1 AUTHOR VERSN REVDAT 1 16-FEB-11 3P71 0 JRNL AUTH V.STANEVICH,L.JIANG,K.A.SATYSHUR,Y.LI,P.D.JEFFREY,Z.LI, JRNL AUTH 2 P.MENDEN,M.F.SEMMELHACK,Y.XING JRNL TITL THE STRUCTURAL BASIS FOR TIGHT CONTROL OF PP2A METHYLATION JRNL TITL 2 AND FUNCTION BY LCMT-1. JRNL REF MOL.CELL V. 41 331 2011 JRNL REFN ISSN 1097-2765 JRNL PMID 21292165 JRNL DOI 10.1016/J.MOLCEL.2010.12.030 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 16510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 902 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -1.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.385 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.286 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.789 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5150 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6956 ; 1.028 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 616 ; 5.450 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 259 ;37.349 ;23.938 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 908 ;15.436 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;16.360 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 752 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3921 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3073 ; 0.261 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4957 ; 0.506 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2077 ; 0.710 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1999 ; 1.227 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 20 T 800 REMARK 3 RESIDUE RANGE : C 303 C 310 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7559 4.6332 -10.4231 REMARK 3 T TENSOR REMARK 3 T11: 0.3625 T22: 0.2306 REMARK 3 T33: 0.0634 T12: -0.0656 REMARK 3 T13: 0.0674 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 1.0889 L22: 1.6455 REMARK 3 L33: 2.8136 L12: -0.2077 REMARK 3 L13: -0.6432 L23: -0.3178 REMARK 3 S TENSOR REMARK 3 S11: -0.0970 S12: 0.0551 S13: -0.1527 REMARK 3 S21: -0.0798 S22: -0.0145 S23: -0.0147 REMARK 3 S31: 0.3648 S32: -0.1106 S33: 0.1115 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 293 REMARK 3 RESIDUE RANGE : C 299 C 302 REMARK 3 RESIDUE RANGE : C 501 C 708 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3169 34.3030 -38.2191 REMARK 3 T TENSOR REMARK 3 T11: 0.2909 T22: 0.2988 REMARK 3 T33: 0.0119 T12: 0.0462 REMARK 3 T13: 0.0403 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.2204 L22: 2.2295 REMARK 3 L33: 4.0958 L12: 0.1175 REMARK 3 L13: -0.5686 L23: -0.5792 REMARK 3 S TENSOR REMARK 3 S11: -0.0657 S12: 0.2969 S13: 0.0580 REMARK 3 S21: 0.0085 S22: 0.0489 S23: 0.0198 REMARK 3 S31: -0.2389 S32: -0.4587 S33: 0.0168 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3P71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97872 REMARK 200 MONOCHROMATOR : DOUBLE SI(111) CRYSTAL WITH REMARK 200 CRYOGENICALLY-COOLED FIRST REMARK 200 CRYSTAL AND SAGITALLY-BENT REMARK 200 SECOND CRYSTAL HORIZONTALLY- REMARK 200 FOCUSING AT 3.3:1 REMARK 200 DEMAGNIFICATION. REMARK 200 OPTICS : MERIDIONALLY-BENT FUSED SILICA REMARK 200 MIRROR WITH PALLADIUM AND REMARK 200 UNCOATED STRIPES VERTICALLY- REMARK 200 FOCUSING AT 6.6:1 REMARK 200 DEMAGNIFICATION. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16691 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13700 REMARK 200 FOR THE DATA SET : 7.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29000 REMARK 200 FOR SHELL : 4.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3IEI, 2IE3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN COMPLEX (~5 MG/ML), 100MM TRIS REMARK 280 -HCL, 22-26% V/V PEG 4000, 200 MM SODIUM ACETATE, 5 MM DTT, PH REMARK 280 8.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.40100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.54600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.65250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 96.54600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.40100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.65250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET T 1 REMARK 465 ALA T 2 REMARK 465 THR T 3 REMARK 465 ARG T 4 REMARK 465 GLN T 5 REMARK 465 ARG T 6 REMARK 465 GLU T 7 REMARK 465 SER T 8 REMARK 465 SER T 9 REMARK 465 ILE T 10 REMARK 465 THR T 11 REMARK 465 SER T 12 REMARK 465 CYS T 13 REMARK 465 CYS T 14 REMARK 465 SER T 15 REMARK 465 THR T 16 REMARK 465 SER T 17 REMARK 465 SER T 18 REMARK 465 MET T 19 REMARK 465 MET C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET T 101 38.97 -92.44 REMARK 500 VAL T 200 -46.86 -137.31 REMARK 500 GLU T 229 -168.68 -168.90 REMARK 500 CYS T 258 46.28 -96.50 REMARK 500 ASP C 57 122.84 -34.99 REMARK 500 ASP C 88 150.45 78.94 REMARK 500 ARG C 89 -55.68 75.62 REMARK 500 TYR C 92 44.38 -140.12 REMARK 500 ALA C 240 -131.48 -124.42 REMARK 500 HIS C 241 -33.87 83.42 REMARK 500 ARG C 268 -44.59 -133.62 REMARK 500 ASP C 279 -164.55 -79.07 REMARK 500 LEU C 282 11.90 59.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH T 654 O REMARK 620 2 ASP C 57 OD2 91.7 REMARK 620 3 HIS C 59 NE2 94.3 90.7 REMARK 620 4 ASP C 85 OD2 172.8 86.1 92.6 REMARK 620 5 HOH C 631 O 89.8 103.3 165.3 84.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 85 OD2 REMARK 620 2 ASN C 117 OD1 95.7 REMARK 620 3 HIS C 167 NE2 89.5 96.5 REMARK 620 4 HIS C 241 ND1 164.4 99.8 87.4 REMARK 620 5 HOH C 631 O 78.7 130.7 131.9 92.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG T 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AN6 C 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IEI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN LEUCINE CARBOXYLMETHYLTRANSFERASE-1 IN REMARK 900 COMPLEX WITH S-ADENOSYL HOMOCYSTEINE REMARK 900 RELATED ID: 2IE3 RELATED DB: PDB REMARK 900 STRUCTURE OF THE PROTEIN PHOSPHATASE 2A CORE ENZYME BOUND TO TUMOR- REMARK 900 INDUCING TOXINS REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT RESIDUES 294-298 IN ENTITY 2 REMARK 999 (MOLECULE C) HAVE BEEN DELETED FOR PURPOSE OF PROPER REMARK 999 DIMERIZATION OF THE C AND T MOLECULES DBREF 3P71 T 1 334 UNP Q9UIC8 LCMT1_HUMAN 1 334 DBREF 3P71 C 1 309 UNP P67775 PP2AA_HUMAN 1 309 SEQADV 3P71 MET T 19 UNP Q9UIC8 CYS 19 ENGINEERED MUTATION SEQADV 3P71 GLU T 21 UNP Q9UIC8 ALA 21 ENGINEERED MUTATION SEQADV 3P71 ASN T 22 UNP Q9UIC8 ASP 22 ENGINEERED MUTATION SEQADV 3P71 SER T 115 UNP Q9UIC8 PRO 115 ENGINEERED MUTATION SEQADV 3P71 C UNP P67775 ARG 294 DELETION SEQADV 3P71 C UNP P67775 ARG 295 DELETION SEQADV 3P71 C UNP P67775 GLY 296 DELETION SEQADV 3P71 C UNP P67775 GLU 297 DELETION SEQADV 3P71 C UNP P67775 PRO 298 DELETION SEQRES 1 T 334 MET ALA THR ARG GLN ARG GLU SER SER ILE THR SER CYS SEQRES 2 T 334 CYS SER THR SER SER MET ASP GLU ASN ASP GLU GLY VAL SEQRES 3 T 334 ARG GLY THR CYS GLU ASP ALA SER LEU CYS LYS ARG PHE SEQRES 4 T 334 ALA VAL SER ILE GLY TYR TRP HIS ASP PRO TYR ILE GLN SEQRES 5 T 334 HIS PHE VAL ARG LEU SER LYS GLU ARG LYS ALA PRO GLU SEQRES 6 T 334 ILE ASN ARG GLY TYR PHE ALA ARG VAL HIS GLY VAL SER SEQRES 7 T 334 GLN LEU ILE LYS ALA PHE LEU ARG LYS THR GLU CYS HIS SEQRES 8 T 334 CYS GLN ILE VAL ASN LEU GLY ALA GLY MET ASP THR THR SEQRES 9 T 334 PHE TRP ARG LEU LYS ASP GLU ASP LEU LEU SER SER LYS SEQRES 10 T 334 TYR PHE GLU VAL ASP PHE PRO MET ILE VAL THR ARG LYS SEQRES 11 T 334 LEU HIS SER ILE LYS CYS LYS PRO PRO LEU SER SER PRO SEQRES 12 T 334 ILE LEU GLU LEU HIS SER GLU ASP THR LEU GLN MET ASP SEQRES 13 T 334 GLY HIS ILE LEU ASP SER LYS ARG TYR ALA VAL ILE GLY SEQRES 14 T 334 ALA ASP LEU ARG ASP LEU SER GLU LEU GLU GLU LYS LEU SEQRES 15 T 334 LYS LYS CYS ASN MET ASN THR GLN LEU PRO THR LEU LEU SEQRES 16 T 334 ILE ALA GLU CYS VAL LEU VAL TYR MET THR PRO GLU GLN SEQRES 17 T 334 SER ALA ASN LEU LEU LYS TRP ALA ALA ASN SER PHE GLU SEQRES 18 T 334 ARG ALA MET PHE ILE ASN TYR GLU GLN VAL ASN MET GLY SEQRES 19 T 334 ASP ARG PHE GLY GLN ILE MET ILE GLU ASN LEU ARG ARG SEQRES 20 T 334 ARG GLN CYS ASP LEU ALA GLY VAL GLU THR CYS LYS SER SEQRES 21 T 334 LEU GLU SER GLN LYS GLU ARG LEU LEU SER ASN GLY TRP SEQRES 22 T 334 GLU THR ALA SER ALA VAL ASP MET MET GLU LEU TYR ASN SEQRES 23 T 334 ARG LEU PRO ARG ALA GLU VAL SER ARG ILE GLU SER LEU SEQRES 24 T 334 GLU PHE LEU ASP GLU MET GLU LEU LEU GLU GLN LEU MET SEQRES 25 T 334 ARG HIS TYR CYS LEU CYS TRP ALA THR LYS GLY GLY ASN SEQRES 26 T 334 GLU LEU GLY LEU LYS GLU ILE THR TYR SEQRES 1 C 304 MET ASP GLU LYS VAL PHE THR LYS GLU LEU ASP GLN TRP SEQRES 2 C 304 ILE GLU GLN LEU ASN GLU CYS LYS GLN LEU SER GLU SER SEQRES 3 C 304 GLN VAL LYS SER LEU CYS GLU LYS ALA LYS GLU ILE LEU SEQRES 4 C 304 THR LYS GLU SER ASN VAL GLN GLU VAL ARG CYS PRO VAL SEQRES 5 C 304 THR VAL CYS GLY ASP VAL HIS GLY GLN PHE HIS ASP LEU SEQRES 6 C 304 MET GLU LEU PHE ARG ILE GLY GLY LYS SER PRO ASP THR SEQRES 7 C 304 ASN TYR LEU PHE MET GLY ASP TYR VAL ASP ARG GLY TYR SEQRES 8 C 304 TYR SER VAL GLU THR VAL THR LEU LEU VAL ALA LEU LYS SEQRES 9 C 304 VAL ARG TYR ARG GLU ARG ILE THR ILE LEU ARG GLY ASN SEQRES 10 C 304 HIS GLU SER ARG GLN ILE THR GLN VAL TYR GLY PHE TYR SEQRES 11 C 304 ASP GLU CYS LEU ARG LYS TYR GLY ASN ALA ASN VAL TRP SEQRES 12 C 304 LYS TYR PHE THR ASP LEU PHE ASP TYR LEU PRO LEU THR SEQRES 13 C 304 ALA LEU VAL ASP GLY GLN ILE PHE CYS LEU HIS GLY GLY SEQRES 14 C 304 LEU SER PRO SER ILE ASP THR LEU ASP HIS ILE ARG ALA SEQRES 15 C 304 LEU ASP ARG LEU GLN GLU VAL PRO HIS GLU GLY PRO MET SEQRES 16 C 304 CYS ASP LEU LEU TRP SER ASP PRO ASP ASP ARG GLY GLY SEQRES 17 C 304 TRP GLY ILE SER PRO ARG GLY ALA GLY TYR THR PHE GLY SEQRES 18 C 304 GLN ASP ILE SER GLU THR PHE ASN HIS ALA ASN GLY LEU SEQRES 19 C 304 THR LEU VAL SER ARG ALA HIS GLN LEU VAL MET GLU GLY SEQRES 20 C 304 TYR ASN TRP CYS HIS ASP ARG ASN VAL VAL THR ILE PHE SEQRES 21 C 304 SER ALA PRO ASN TYR CYS TYR ARG CYS GLY ASN GLN ALA SEQRES 22 C 304 ALA ILE MET GLU LEU ASP ASP THR LEU LYS TYR SER PHE SEQRES 23 C 304 LEU GLN PHE ASP PRO ALA PRO HIS VAL THR ARG ARG THR SEQRES 24 C 304 PRO ASP TYR PHE LEU HET PEG T 800 7 HET AN6 C 310 28 HET MN C 501 1 HET MN C 502 1 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM AN6 5'-{[(3S)-3-AMINO-3-CARBOXYPROPYL](ETHYL)AMINO}-5'- HETNAM 2 AN6 DEOXYADENOSINE HETNAM MN MANGANESE (II) ION FORMUL 3 PEG C4 H10 O3 FORMUL 4 AN6 C16 H25 N7 O5 FORMUL 5 MN 2(MN 2+) FORMUL 7 HOH *120(H2 O) HELIX 1 1 ASN T 22 ILE T 43 1 22 HELIX 2 2 TYR T 50 PHE T 54 5 5 HELIX 3 3 ALA T 63 GLU T 89 1 27 HELIX 4 4 THR T 103 GLU T 111 1 9 HELIX 5 5 PHE T 123 LYS T 137 1 15 HELIX 6 6 LYS T 137 LEU T 147 1 11 HELIX 7 7 ASP T 174 CYS T 185 1 12 HELIX 8 8 VAL T 200 MET T 204 5 5 HELIX 9 9 THR T 205 PHE T 220 1 16 HELIX 10 10 ASP T 235 ARG T 248 1 14 HELIX 11 11 GLY T 254 CYS T 258 5 5 HELIX 12 12 SER T 260 ASN T 271 1 12 HELIX 13 13 MET T 281 ARG T 287 1 7 HELIX 14 14 PRO T 289 SER T 298 1 10 HELIX 15 15 GLU T 304 ARG T 313 1 10 HELIX 16 16 GLY T 328 ILE T 332 5 5 HELIX 17 17 ASP C 2 GLU C 19 1 18 HELIX 18 18 SER C 24 THR C 40 1 17 HELIX 19 19 GLN C 61 GLY C 73 1 13 HELIX 20 20 TYR C 92 TYR C 107 1 16 HELIX 21 21 SER C 120 GLN C 125 1 6 HELIX 22 22 GLY C 128 TYR C 137 1 10 HELIX 23 23 ALA C 140 ASP C 151 1 12 HELIX 24 24 LEU C 177 ALA C 182 1 6 HELIX 25 25 GLY C 193 SER C 201 1 9 HELIX 26 26 GLY C 221 GLY C 233 1 13 HELIX 27 27 ASN C 264 ARG C 268 5 5 SHEET 1 A 8 ILE T 159 ASP T 161 0 SHEET 2 A 8 TYR T 165 GLY T 169 -1 O VAL T 167 N LEU T 160 SHEET 3 A 8 LYS T 117 ASP T 122 1 N GLU T 120 O ILE T 168 SHEET 4 A 8 GLN T 93 LEU T 97 1 N ILE T 94 O PHE T 119 SHEET 5 A 8 THR T 193 GLU T 198 1 O ILE T 196 N LEU T 97 SHEET 6 A 8 ALA T 223 GLN T 230 1 O MET T 224 N LEU T 195 SHEET 7 A 8 TYR T 315 LYS T 322 -1 O CYS T 316 N GLU T 229 SHEET 8 A 8 THR T 275 ASP T 280 -1 N VAL T 279 O LEU T 317 SHEET 1 B 6 VAL C 45 VAL C 48 0 SHEET 2 B 6 THR C 156 VAL C 159 1 O THR C 156 N GLN C 46 SHEET 3 B 6 ILE C 163 LEU C 166 -1 O CYS C 165 N ALA C 157 SHEET 4 B 6 LEU C 236 ARG C 239 1 O SER C 238 N PHE C 164 SHEET 5 B 6 VAL C 256 ILE C 259 1 O ILE C 259 N ARG C 239 SHEET 6 B 6 TYR C 248 CYS C 251 -1 N CYS C 251 O VAL C 256 SHEET 1 C 5 ILE C 111 ILE C 113 0 SHEET 2 C 5 TYR C 80 PHE C 82 1 N PHE C 82 O THR C 112 SHEET 3 C 5 VAL C 52 CYS C 55 1 N CYS C 55 O LEU C 81 SHEET 4 C 5 ALA C 273 LEU C 278 -1 O MET C 276 N VAL C 54 SHEET 5 C 5 TYR C 284 PHE C 289 -1 O PHE C 289 N ALA C 273 SHEET 1 D 2 ASP C 202 PRO C 203 0 SHEET 2 D 2 THR C 219 PHE C 220 1 O PHE C 220 N ASP C 202 LINK OXT LEU C 309 C1 AN6 C 310 1555 1555 1.33 LINK O HOH T 654 MN MN C 502 1555 1555 2.18 LINK OD2 ASP C 57 MN MN C 502 1555 1555 1.89 LINK NE2 HIS C 59 MN MN C 502 1555 1555 2.20 LINK OD2 ASP C 85 MN MN C 501 1555 1555 2.43 LINK OD2 ASP C 85 MN MN C 502 1555 1555 1.90 LINK OD1 ASN C 117 MN MN C 501 1555 1555 1.89 LINK NE2 HIS C 167 MN MN C 501 1555 1555 2.03 LINK ND1 HIS C 241 MN MN C 501 1555 1555 2.19 LINK MN MN C 501 O HOH C 631 1555 1555 1.84 LINK MN MN C 502 O HOH C 631 1555 1555 2.19 CISPEP 1 CYS C 50 PRO C 51 0 0.97 CISPEP 2 SER C 75 PRO C 76 0 3.32 SITE 1 AC1 5 ASP C 280 ARG T 236 GLN T 239 HOH T 648 SITE 2 AC1 5 HOH T 671 SITE 1 AC2 18 LEU C 309 HOH C 606 VAL T 26 THR T 29 SITE 2 AC2 18 CYS T 30 LYS T 37 ARG T 73 GLY T 98 SITE 3 AC2 18 ALA T 99 ASP T 122 PHE T 123 ALA T 170 SITE 4 AC2 18 ASP T 171 LEU T 172 ARG T 173 GLU T 198 SITE 5 AC2 18 CYS T 199 VAL T 200 SITE 1 AC3 6 ASP C 85 ASN C 117 HIS C 167 HIS C 241 SITE 2 AC3 6 MN C 502 HOH C 631 SITE 1 AC4 6 ASP C 57 HIS C 59 ASP C 85 MN C 501 SITE 2 AC4 6 HOH C 631 HOH T 654 CRYST1 48.802 65.305 193.092 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020491 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005179 0.00000