HEADER TRANSPORT PROTEIN 12-OCT-10 3P7I TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHND IN COMPLEX WITH 2- TITLE 2 AMINOETHYL PHOSPHONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHND, SUBUNIT OF ALKYLPHOSPHONATE ABC TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-338; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI UTI89; SOURCE 3 ORGANISM_TAXID: 364106; SOURCE 4 STRAIN: UTI89 / UPEC; SOURCE 5 GENE: PHND, UTI89_C4699; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PHOSPHONATE BINDING PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.ALICEA,E.R.SCHREITER REVDAT 3 21-FEB-24 3P7I 1 REMARK SEQADV REVDAT 2 21-DEC-11 3P7I 1 JRNL REVDAT 1 12-OCT-11 3P7I 0 JRNL AUTH I.ALICEA,J.S.MARVIN,A.E.MIKLOS,A.D.ELLINGTON,L.L.LOOGER, JRNL AUTH 2 E.R.SCHREITER JRNL TITL STRUCTURE OF THE ESCHERICHIA COLI PHOSPHONATE BINDING JRNL TITL 2 PROTEIN PHND AND RATIONALLY OPTIMIZED PHOSPHONATE JRNL TITL 3 BIOSENSORS. JRNL REF J.MOL.BIOL. V. 414 356 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 22019591 JRNL DOI 10.1016/J.JMB.2011.09.047 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1880 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2547 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.4450 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.4590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2353 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2603 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3542 ; 2.021 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 341 ; 5.956 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;42.228 ;25.798 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;16.728 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.994 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 395 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1959 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1598 ; 1.319 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2594 ; 2.077 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1005 ; 3.215 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 933 ; 5.051 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9350 -26.9490 15.4410 REMARK 3 T TENSOR REMARK 3 T11: 0.0314 T22: 0.0627 REMARK 3 T33: 0.1273 T12: 0.0081 REMARK 3 T13: -0.0319 T23: 0.0538 REMARK 3 L TENSOR REMARK 3 L11: 2.0359 L22: 1.5976 REMARK 3 L33: 1.0811 L12: 0.6520 REMARK 3 L13: -1.1125 L23: -0.6744 REMARK 3 S TENSOR REMARK 3 S11: -0.0973 S12: -0.2541 S13: -0.1949 REMARK 3 S21: -0.0158 S22: -0.0908 S23: -0.2796 REMARK 3 S31: 0.0699 S32: 0.1908 S33: 0.1881 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): -9.1100 -25.7480 12.3850 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: 0.0275 REMARK 3 T33: 0.0915 T12: -0.0047 REMARK 3 T13: -0.0226 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.0129 L22: 0.7605 REMARK 3 L33: 0.6195 L12: 0.5902 REMARK 3 L13: 0.4154 L23: 0.3013 REMARK 3 S TENSOR REMARK 3 S11: 0.0779 S12: -0.0639 S13: -0.1178 REMARK 3 S21: 0.0910 S22: -0.0350 S23: 0.0254 REMARK 3 S31: 0.0474 S32: -0.0558 S33: -0.0429 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7690 -14.7720 10.1810 REMARK 3 T TENSOR REMARK 3 T11: 0.0578 T22: 0.0569 REMARK 3 T33: 0.1014 T12: -0.0151 REMARK 3 T13: -0.0184 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.6532 L22: 1.9636 REMARK 3 L33: 0.3382 L12: 0.3844 REMARK 3 L13: -0.7039 L23: 0.0323 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: 0.0019 S13: 0.0273 REMARK 3 S21: -0.0336 S22: 0.0285 S23: -0.0515 REMARK 3 S31: -0.0181 S32: 0.0275 S33: -0.0046 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 264 A 281 REMARK 3 ORIGIN FOR THE GROUP (A): -26.9810 -8.2550 23.9470 REMARK 3 T TENSOR REMARK 3 T11: 0.2074 T22: 0.1391 REMARK 3 T33: 0.3677 T12: 0.0372 REMARK 3 T13: 0.0812 T23: 0.1145 REMARK 3 L TENSOR REMARK 3 L11: 6.3889 L22: 4.9699 REMARK 3 L33: 11.9858 L12: -5.1237 REMARK 3 L13: -5.9471 L23: 2.4913 REMARK 3 S TENSOR REMARK 3 S11: 0.1420 S12: 0.1715 S13: 0.2623 REMARK 3 S21: 0.0539 S22: 0.1748 S23: -0.1387 REMARK 3 S31: -0.2473 S32: -0.9538 S33: -0.3167 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 282 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8790 0.2790 14.9970 REMARK 3 T TENSOR REMARK 3 T11: 0.0547 T22: 0.0120 REMARK 3 T33: 0.2384 T12: -0.0213 REMARK 3 T13: 0.0182 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.9819 L22: 4.9123 REMARK 3 L33: 4.3502 L12: 0.4076 REMARK 3 L13: -2.2783 L23: -2.0104 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.0438 S13: -0.4034 REMARK 3 S21: 0.2254 S22: -0.0788 S23: 0.4585 REMARK 3 S31: -0.0191 S32: -0.0289 S33: 0.0843 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3P7I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 45.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, SODIUM ACETATE REMARK 280 TRIHYDRATE, PH 4.6, 25% W/V PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.04700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.22000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.04700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.22000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLU A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 SER A 305 REMARK 465 SER A 306 REMARK 465 VAL A 307 REMARK 465 SER A 308 REMARK 465 LYS A 309 REMARK 465 ALA A 310 REMARK 465 VAL A 311 REMARK 465 GLN A 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 235 CD - CE - NZ ANGL. DEV. = -16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 131 -59.99 -136.42 REMARK 500 ASN A 174 -165.44 -168.49 REMARK 500 ALA A 186 69.51 -153.18 REMARK 500 ALA A 186 69.15 -152.09 REMARK 500 LYS A 273 -5.40 -54.13 REMARK 500 ASN A 276 -159.24 -75.86 REMARK 500 GLN A 278 -19.15 -49.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P7I A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 316 DBREF 3P7I A 1 312 UNP Q1R3F7 Q1R3F7_ECOUT 27 338 SEQADV 3P7I MET A -8 UNP Q1R3F7 EXPRESSION TAG SEQADV 3P7I HIS A -7 UNP Q1R3F7 EXPRESSION TAG SEQADV 3P7I HIS A -6 UNP Q1R3F7 EXPRESSION TAG SEQADV 3P7I HIS A -5 UNP Q1R3F7 EXPRESSION TAG SEQADV 3P7I HIS A -4 UNP Q1R3F7 EXPRESSION TAG SEQADV 3P7I HIS A -3 UNP Q1R3F7 EXPRESSION TAG SEQADV 3P7I HIS A -2 UNP Q1R3F7 EXPRESSION TAG SEQADV 3P7I GLY A -1 UNP Q1R3F7 EXPRESSION TAG SEQADV 3P7I SER A 0 UNP Q1R3F7 EXPRESSION TAG SEQRES 1 A 321 MET HIS HIS HIS HIS HIS HIS GLY SER GLU GLU GLN GLU SEQRES 2 A 321 LYS ALA LEU ASN PHE GLY ILE ILE SER THR GLU SER GLN SEQRES 3 A 321 GLN ASN LEU LYS PRO GLN TRP THR PRO PHE LEU GLN ASP SEQRES 4 A 321 MET GLU LYS LYS LEU GLY VAL LYS VAL ASN ALA PHE PHE SEQRES 5 A 321 ALA PRO ASP TYR ALA GLY ILE ILE GLN GLY MET ARG PHE SEQRES 6 A 321 ASN LYS VAL ASP ILE ALA TRP TYR GLY ASN LEU SER ALA SEQRES 7 A 321 MET GLU ALA VAL ASP ARG ALA ASN GLY GLN VAL PHE ALA SEQRES 8 A 321 GLN THR VAL ALA ALA ASP GLY SER PRO GLY TYR TRP SER SEQRES 9 A 321 VAL LEU ILE VAL ASN LYS ASP SER PRO ILE ASN ASN LEU SEQRES 10 A 321 ASN ASP LEU LEU ALA LYS ARG LYS ASP LEU THR PHE GLY SEQRES 11 A 321 ASN GLY ASP PRO ASN SER THR SER GLY PHE LEU VAL PRO SEQRES 12 A 321 GLY TYR TYR VAL PHE ALA LYS ASN ASN ILE SER ALA SER SEQRES 13 A 321 ASP PHE LYS ARG THR VAL ASN ALA GLY HIS GLU THR ASN SEQRES 14 A 321 ALA LEU ALA VAL ALA ASN LYS GLN VAL ASP VAL ALA THR SEQRES 15 A 321 ASN ASN THR GLU ASN LEU ASP LYS LEU LYS THR SER ALA SEQRES 16 A 321 PRO GLU LYS LEU LYS GLU LEU LYS VAL ILE TRP LYS SER SEQRES 17 A 321 PRO LEU ILE PRO GLY ASP PRO ILE VAL TRP ARG LYS ASN SEQRES 18 A 321 LEU SER GLU THR THR LYS ASP LYS ILE TYR ASP PHE PHE SEQRES 19 A 321 MET ASN TYR GLY LYS THR PRO GLU GLU LYS ALA VAL LEU SEQRES 20 A 321 GLU ARG LEU GLY TRP ALA PRO PHE ARG ALA SER SER ASP SEQRES 21 A 321 LEU GLN LEU VAL PRO ILE ARG GLN LEU ALA LEU PHE LYS SEQRES 22 A 321 GLU MET GLN SER VAL LYS ASP ASN LYS GLY LEU ASN GLU SEQRES 23 A 321 GLN ASP LYS LEU ALA LYS THR THR ALA ILE GLN ALA GLN SEQRES 24 A 321 LEU ASP ASP LEU ASP ARG LEU ASN ASN ALA LEU SER ALA SEQRES 25 A 321 MET SER SER VAL SER LYS ALA VAL GLN HET P7I A 313 7 HET GOL A 314 6 HET GOL A 315 6 HET GOL A 316 6 HETNAM P7I (2-AMINOETHYL)PHOSPHONIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 P7I C2 H8 N O3 P FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *143(H2 O) HELIX 1 1 SER A 16 GLY A 36 1 21 HELIX 2 2 ASP A 46 PHE A 56 1 11 HELIX 3 3 GLY A 65 ALA A 76 1 12 HELIX 4 4 ASN A 107 LYS A 114 1 8 HELIX 5 5 ARG A 115 ASP A 117 5 3 HELIX 6 6 PHE A 131 VAL A 138 1 8 HELIX 7 7 PHE A 139 ASN A 143 5 5 HELIX 8 8 SER A 145 PHE A 149 5 5 HELIX 9 9 GLY A 156 ASN A 166 1 11 HELIX 10 10 THR A 176 LYS A 181 1 6 HELIX 11 11 LYS A 181 ALA A 186 1 6 HELIX 12 12 ALA A 186 LYS A 191 1 6 HELIX 13 13 SER A 214 TYR A 228 1 15 HELIX 14 14 THR A 231 GLY A 242 1 12 HELIX 15 15 SER A 250 GLN A 253 5 4 HELIX 16 16 LEU A 254 ASP A 271 1 18 HELIX 17 17 ASN A 276 MET A 304 1 29 SHEET 1 A 6 VAL A 39 PHE A 42 0 SHEET 2 A 6 LEU A 7 ILE A 11 1 N PHE A 9 O ASN A 40 SHEET 3 A 6 ILE A 61 TRP A 63 1 O ILE A 61 N GLY A 10 SHEET 4 A 6 PRO A 206 ARG A 210 -1 O VAL A 208 N ALA A 62 SHEET 5 A 6 GLY A 78 ALA A 86 -1 N ALA A 82 O ILE A 207 SHEET 6 A 6 TRP A 243 ALA A 248 -1 O ALA A 244 N VAL A 85 SHEET 1 B 5 ARG A 151 ASN A 154 0 SHEET 2 B 5 THR A 119 ASN A 122 1 N ASN A 122 O VAL A 153 SHEET 3 B 5 VAL A 171 ASN A 175 1 O VAL A 171 N GLY A 121 SHEET 4 B 5 SER A 95 ASN A 100 -1 N ILE A 98 O ALA A 172 SHEET 5 B 5 LEU A 193 LYS A 198 -1 O LYS A 194 N VAL A 99 SITE 1 AC1 10 TYR A 47 GLY A 65 TYR A 93 SER A 127 SITE 2 AC1 10 THR A 128 SER A 129 HIS A 157 GLU A 177 SITE 3 AC1 10 ASP A 205 HOH A 432 SITE 1 AC2 5 SER A 16 GLN A 17 GLN A 18 ASN A 276 SITE 2 AC2 5 HOH A 415 SITE 1 AC3 5 ASP A 219 TYR A 222 ARG A 296 ASN A 299 SITE 2 AC3 5 HOH A 356 SITE 1 AC4 6 SER A 13 GLU A 15 GLY A 156 GLU A 158 SITE 2 AC4 6 THR A 159 HOH A 422 CRYST1 76.094 82.440 54.667 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013142 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018293 0.00000