data_3P8R # _entry.id 3P8R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3P8R pdb_00003p8r 10.2210/pdb3p8r/pdb RCSB RCSB062098 ? ? WWPDB D_1000062098 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-10-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-03-13 4 'Structure model' 1 3 2013-03-27 5 'Structure model' 1 4 2013-04-24 6 'Structure model' 1 5 2018-11-21 7 'Structure model' 1 6 2021-02-10 8 'Structure model' 1 7 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Structure summary' 7 7 'Structure model' 'Database references' 8 7 'Structure model' 'Structure summary' 9 8 'Structure model' 'Data collection' 10 8 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' audit_author 2 7 'Structure model' audit_author 3 7 'Structure model' struct_ref_seq_dif 4 8 'Structure model' chem_comp_atom 5 8 'Structure model' chem_comp_bond 6 8 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_audit_author.identifier_ORCID' 2 7 'Structure model' '_audit_author.identifier_ORCID' 3 7 'Structure model' '_struct_ref_seq_dif.details' 4 8 'Structure model' '_database_2.pdbx_DOI' 5 8 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3P8R _pdbx_database_status.recvd_initial_deposition_date 2010-10-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-20032e _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Patskovsky, Y.' 1 ? 'Toro, R.' 2 ? 'Dickey, M.' 3 ? 'Sauder, J.M.' 4 0000-0002-0254-4955 'Burley, S.K.' 5 0000-0002-2487-9713 'Poulter, C.D.' 6 ? 'Gerlt, J.A.' 7 ? 'Almo, S.C.' 8 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 9 ? # _citation.id primary _citation.title 'Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first E1196 _citation.page_last E1202 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23493556 _citation.pdbx_database_id_DOI 10.1073/pnas.1300632110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wallrapp, F.H.' 1 ? primary 'Pan, J.J.' 2 ? primary 'Ramamoorthy, G.' 3 ? primary 'Almonacid, D.E.' 4 ? primary 'Hillerich, B.S.' 5 ? primary 'Seidel, R.' 6 ? primary 'Patskovsky, Y.' 7 ? primary 'Babbitt, P.C.' 8 ? primary 'Almo, S.C.' 9 ? primary 'Jacobson, M.P.' 10 ? primary 'Poulter, C.D.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Geranyltranstransferase 33277.680 1 ? ? ? ? 2 water nat water 18.015 35 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHSLEALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVE CIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGM CLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTET LGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYNTEHLEEFARYVVERKN ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHSLEALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVE CIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGM CLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTET LGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYNTEHLEEFARYVVERKN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-20032e # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 SER n 1 10 LEU n 1 11 GLU n 1 12 ALA n 1 13 LEU n 1 14 SER n 1 15 SER n 1 16 TYR n 1 17 GLN n 1 18 GLN n 1 19 ARG n 1 20 ASN n 1 21 ASN n 1 22 GLN n 1 23 GLN n 1 24 LEU n 1 25 ASP n 1 26 GLN n 1 27 TRP n 1 28 LEU n 1 29 ASN n 1 30 ARG n 1 31 ILE n 1 32 PRO n 1 33 PHE n 1 34 GLN n 1 35 THR n 1 36 LEU n 1 37 PRO n 1 38 LEU n 1 39 ILE n 1 40 GLU n 1 41 ALA n 1 42 MET n 1 43 ARG n 1 44 TYR n 1 45 GLY n 1 46 LEU n 1 47 LEU n 1 48 LEU n 1 49 GLY n 1 50 GLY n 1 51 LYS n 1 52 ARG n 1 53 ALA n 1 54 ARG n 1 55 PRO n 1 56 TYR n 1 57 LEU n 1 58 VAL n 1 59 TYR n 1 60 ILE n 1 61 THR n 1 62 GLY n 1 63 GLN n 1 64 MET n 1 65 LEU n 1 66 GLY n 1 67 CYS n 1 68 GLU n 1 69 LEU n 1 70 SER n 1 71 ASP n 1 72 LEU n 1 73 ASP n 1 74 THR n 1 75 PRO n 1 76 ALA n 1 77 SER n 1 78 ALA n 1 79 VAL n 1 80 GLU n 1 81 CYS n 1 82 ILE n 1 83 HIS n 1 84 ALA n 1 85 TYR n 1 86 SER n 1 87 LEU n 1 88 ILE n 1 89 HIS n 1 90 ASP n 1 91 ASP n 1 92 LEU n 1 93 PRO n 1 94 ALA n 1 95 MET n 1 96 ASP n 1 97 ASP n 1 98 ASP n 1 99 GLU n 1 100 LEU n 1 101 ARG n 1 102 ARG n 1 103 GLY n 1 104 LYS n 1 105 PRO n 1 106 THR n 1 107 CYS n 1 108 HIS n 1 109 ILE n 1 110 GLN n 1 111 PHE n 1 112 ASP n 1 113 GLU n 1 114 ALA n 1 115 THR n 1 116 ALA n 1 117 ILE n 1 118 LEU n 1 119 THR n 1 120 GLY n 1 121 ASP n 1 122 ALA n 1 123 LEU n 1 124 GLN n 1 125 THR n 1 126 LEU n 1 127 ALA n 1 128 PHE n 1 129 THR n 1 130 ILE n 1 131 LEU n 1 132 ALA n 1 133 GLU n 1 134 GLY n 1 135 ASP n 1 136 LEU n 1 137 SER n 1 138 ALA n 1 139 ALA n 1 140 GLY n 1 141 GLU n 1 142 THR n 1 143 GLN n 1 144 ARG n 1 145 VAL n 1 146 ALA n 1 147 MET n 1 148 LEU n 1 149 GLN n 1 150 ALA n 1 151 LEU n 1 152 ALA n 1 153 GLU n 1 154 ALA n 1 155 SER n 1 156 GLY n 1 157 ALA n 1 158 GLN n 1 159 GLY n 1 160 MET n 1 161 CYS n 1 162 LEU n 1 163 GLY n 1 164 GLN n 1 165 ALA n 1 166 LEU n 1 167 ASP n 1 168 LEU n 1 169 ALA n 1 170 ALA n 1 171 GLU n 1 172 ASN n 1 173 ARG n 1 174 LEU n 1 175 ILE n 1 176 SER n 1 177 LEU n 1 178 GLU n 1 179 GLU n 1 180 LEU n 1 181 GLU n 1 182 THR n 1 183 ILE n 1 184 HIS n 1 185 ARG n 1 186 ASN n 1 187 LYS n 1 188 THR n 1 189 GLY n 1 190 ALA n 1 191 LEU n 1 192 MET n 1 193 ARG n 1 194 CYS n 1 195 ALA n 1 196 ILE n 1 197 ARG n 1 198 LEU n 1 199 GLY n 1 200 ALA n 1 201 LEU n 1 202 ALA n 1 203 ALA n 1 204 GLY n 1 205 GLU n 1 206 LYS n 1 207 GLY n 1 208 ARG n 1 209 ALA n 1 210 MET n 1 211 LEU n 1 212 PRO n 1 213 HIS n 1 214 LEU n 1 215 ASP n 1 216 ARG n 1 217 TYR n 1 218 ALA n 1 219 GLU n 1 220 ALA n 1 221 VAL n 1 222 GLY n 1 223 LEU n 1 224 ALA n 1 225 PHE n 1 226 GLN n 1 227 VAL n 1 228 GLN n 1 229 ASP n 1 230 ASP n 1 231 ILE n 1 232 LEU n 1 233 ASP n 1 234 ILE n 1 235 ILE n 1 236 SER n 1 237 ASP n 1 238 THR n 1 239 GLU n 1 240 THR n 1 241 LEU n 1 242 GLY n 1 243 LYS n 1 244 PRO n 1 245 GLN n 1 246 GLY n 1 247 SER n 1 248 ASP n 1 249 GLN n 1 250 GLU n 1 251 LEU n 1 252 ASN n 1 253 LYS n 1 254 SER n 1 255 THR n 1 256 TYR n 1 257 PRO n 1 258 ALA n 1 259 LEU n 1 260 LEU n 1 261 GLY n 1 262 LEU n 1 263 GLU n 1 264 GLY n 1 265 ALA n 1 266 GLN n 1 267 GLN n 1 268 LYS n 1 269 ALA n 1 270 HIS n 1 271 THR n 1 272 LEU n 1 273 LEU n 1 274 GLN n 1 275 GLU n 1 276 ALA n 1 277 LEU n 1 278 LEU n 1 279 ALA n 1 280 LEU n 1 281 GLU n 1 282 ALA n 1 283 ILE n 1 284 PRO n 1 285 TYR n 1 286 ASN n 1 287 THR n 1 288 GLU n 1 289 HIS n 1 290 LEU n 1 291 GLU n 1 292 GLU n 1 293 PHE n 1 294 ALA n 1 295 ARG n 1 296 TYR n 1 297 VAL n 1 298 VAL n 1 299 GLU n 1 300 ARG n 1 301 LYS n 1 302 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene VC_0890 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain N16961 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio cholerae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 666 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name BN-PSGX2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -7 ? ? ? A . n A 1 2 ALA 2 -6 ? ? ? A . n A 1 3 HIS 3 -5 ? ? ? A . n A 1 4 HIS 4 -4 ? ? ? A . n A 1 5 HIS 5 -3 ? ? ? A . n A 1 6 HIS 6 -2 -2 HIS HIS A . n A 1 7 HIS 7 -1 -1 HIS HIS A . n A 1 8 HIS 8 0 0 HIS HIS A . n A 1 9 SER 9 1 1 SER SER A . n A 1 10 LEU 10 2 2 LEU LEU A . n A 1 11 GLU 11 3 3 GLU GLU A . n A 1 12 ALA 12 4 4 ALA ALA A . n A 1 13 LEU 13 5 5 LEU LEU A . n A 1 14 SER 14 6 6 SER SER A . n A 1 15 SER 15 7 7 SER SER A . n A 1 16 TYR 16 8 8 TYR TYR A . n A 1 17 GLN 17 9 9 GLN ALA A . n A 1 18 GLN 18 10 10 GLN GLN A . n A 1 19 ARG 19 11 11 ARG ARG A . n A 1 20 ASN 20 12 12 ASN ASN A . n A 1 21 ASN 21 13 13 ASN ASN A . n A 1 22 GLN 22 14 14 GLN GLN A . n A 1 23 GLN 23 15 15 GLN GLN A . n A 1 24 LEU 24 16 16 LEU LEU A . n A 1 25 ASP 25 17 17 ASP ASP A . n A 1 26 GLN 26 18 18 GLN GLN A . n A 1 27 TRP 27 19 19 TRP TRP A . n A 1 28 LEU 28 20 20 LEU LEU A . n A 1 29 ASN 29 21 21 ASN ASN A . n A 1 30 ARG 30 22 22 ARG ARG A . n A 1 31 ILE 31 23 23 ILE ILE A . n A 1 32 PRO 32 24 24 PRO PRO A . n A 1 33 PHE 33 25 25 PHE PHE A . n A 1 34 GLN 34 26 26 GLN GLN A . n A 1 35 THR 35 27 27 THR THR A . n A 1 36 LEU 36 28 28 LEU LEU A . n A 1 37 PRO 37 29 29 PRO PRO A . n A 1 38 LEU 38 30 30 LEU LEU A . n A 1 39 ILE 39 31 31 ILE ILE A . n A 1 40 GLU 40 32 32 GLU GLU A . n A 1 41 ALA 41 33 33 ALA ALA A . n A 1 42 MET 42 34 34 MET MET A . n A 1 43 ARG 43 35 35 ARG ARG A . n A 1 44 TYR 44 36 36 TYR ALA A . n A 1 45 GLY 45 37 37 GLY GLY A . n A 1 46 LEU 46 38 38 LEU LEU A . n A 1 47 LEU 47 39 39 LEU LEU A . n A 1 48 LEU 48 40 40 LEU LEU A . n A 1 49 GLY 49 41 41 GLY GLY A . n A 1 50 GLY 50 42 42 GLY GLY A . n A 1 51 LYS 51 43 43 LYS LYS A . n A 1 52 ARG 52 44 44 ARG ARG A . n A 1 53 ALA 53 45 45 ALA ALA A . n A 1 54 ARG 54 46 46 ARG ARG A . n A 1 55 PRO 55 47 47 PRO PRO A . n A 1 56 TYR 56 48 48 TYR TYR A . n A 1 57 LEU 57 49 49 LEU LEU A . n A 1 58 VAL 58 50 50 VAL VAL A . n A 1 59 TYR 59 51 51 TYR TYR A . n A 1 60 ILE 60 52 52 ILE ILE A . n A 1 61 THR 61 53 53 THR THR A . n A 1 62 GLY 62 54 54 GLY GLY A . n A 1 63 GLN 63 55 55 GLN GLN A . n A 1 64 MET 64 56 56 MET MET A . n A 1 65 LEU 65 57 57 LEU LEU A . n A 1 66 GLY 66 58 58 GLY GLY A . n A 1 67 CYS 67 59 59 CYS CYS A . n A 1 68 GLU 68 60 60 GLU GLU A . n A 1 69 LEU 69 61 61 LEU LEU A . n A 1 70 SER 70 62 62 SER SER A . n A 1 71 ASP 71 63 63 ASP ASP A . n A 1 72 LEU 72 64 64 LEU LEU A . n A 1 73 ASP 73 65 65 ASP ASP A . n A 1 74 THR 74 66 66 THR THR A . n A 1 75 PRO 75 67 67 PRO PRO A . n A 1 76 ALA 76 68 68 ALA ALA A . n A 1 77 SER 77 69 69 SER SER A . n A 1 78 ALA 78 70 70 ALA ALA A . n A 1 79 VAL 79 71 71 VAL VAL A . n A 1 80 GLU 80 72 72 GLU GLU A . n A 1 81 CYS 81 73 73 CYS CYS A . n A 1 82 ILE 82 74 74 ILE ILE A . n A 1 83 HIS 83 75 75 HIS HIS A . n A 1 84 ALA 84 76 76 ALA ALA A . n A 1 85 TYR 85 77 77 TYR TYR A . n A 1 86 SER 86 78 78 SER SER A . n A 1 87 LEU 87 79 79 LEU LEU A . n A 1 88 ILE 88 80 80 ILE ILE A . n A 1 89 HIS 89 81 81 HIS HIS A . n A 1 90 ASP 90 82 82 ASP ASP A . n A 1 91 ASP 91 83 83 ASP ASP A . n A 1 92 LEU 92 84 84 LEU LEU A . n A 1 93 PRO 93 85 85 PRO PRO A . n A 1 94 ALA 94 86 86 ALA ALA A . n A 1 95 MET 95 87 87 MET MET A . n A 1 96 ASP 96 88 88 ASP ASP A . n A 1 97 ASP 97 89 89 ASP ASP A . n A 1 98 ASP 98 90 ? ? ? A . n A 1 99 GLU 99 91 ? ? ? A . n A 1 100 LEU 100 92 ? ? ? A . n A 1 101 ARG 101 93 ? ? ? A . n A 1 102 ARG 102 94 ? ? ? A . n A 1 103 GLY 103 95 ? ? ? A . n A 1 104 LYS 104 96 ? ? ? A . n A 1 105 PRO 105 97 ? ? ? A . n A 1 106 THR 106 98 ? ? ? A . n A 1 107 CYS 107 99 ? ? ? A . n A 1 108 HIS 108 100 ? ? ? A . n A 1 109 ILE 109 101 ? ? ? A . n A 1 110 GLN 110 102 ? ? ? A . n A 1 111 PHE 111 103 ? ? ? A . n A 1 112 ASP 112 104 104 ASP ASP A . n A 1 113 GLU 113 105 105 GLU GLU A . n A 1 114 ALA 114 106 106 ALA ALA A . n A 1 115 THR 115 107 107 THR THR A . n A 1 116 ALA 116 108 108 ALA ALA A . n A 1 117 ILE 117 109 109 ILE ILE A . n A 1 118 LEU 118 110 110 LEU LEU A . n A 1 119 THR 119 111 111 THR THR A . n A 1 120 GLY 120 112 112 GLY GLY A . n A 1 121 ASP 121 113 113 ASP ASP A . n A 1 122 ALA 122 114 114 ALA ALA A . n A 1 123 LEU 123 115 115 LEU LEU A . n A 1 124 GLN 124 116 116 GLN GLN A . n A 1 125 THR 125 117 117 THR THR A . n A 1 126 LEU 126 118 118 LEU LEU A . n A 1 127 ALA 127 119 119 ALA ALA A . n A 1 128 PHE 128 120 120 PHE PHE A . n A 1 129 THR 129 121 121 THR THR A . n A 1 130 ILE 130 122 122 ILE ILE A . n A 1 131 LEU 131 123 123 LEU LEU A . n A 1 132 ALA 132 124 124 ALA ALA A . n A 1 133 GLU 133 125 125 GLU GLU A . n A 1 134 GLY 134 126 126 GLY GLY A . n A 1 135 ASP 135 127 127 ASP ASP A . n A 1 136 LEU 136 128 128 LEU LEU A . n A 1 137 SER 137 129 129 SER SER A . n A 1 138 ALA 138 130 130 ALA ALA A . n A 1 139 ALA 139 131 131 ALA ALA A . n A 1 140 GLY 140 132 132 GLY GLY A . n A 1 141 GLU 141 133 133 GLU GLU A . n A 1 142 THR 142 134 134 THR THR A . n A 1 143 GLN 143 135 135 GLN GLN A . n A 1 144 ARG 144 136 136 ARG ARG A . n A 1 145 VAL 145 137 137 VAL VAL A . n A 1 146 ALA 146 138 138 ALA ALA A . n A 1 147 MET 147 139 139 MET MET A . n A 1 148 LEU 148 140 140 LEU LEU A . n A 1 149 GLN 149 141 141 GLN GLN A . n A 1 150 ALA 150 142 142 ALA ALA A . n A 1 151 LEU 151 143 143 LEU LEU A . n A 1 152 ALA 152 144 144 ALA ALA A . n A 1 153 GLU 153 145 145 GLU GLU A . n A 1 154 ALA 154 146 146 ALA ALA A . n A 1 155 SER 155 147 147 SER SER A . n A 1 156 GLY 156 148 148 GLY GLY A . n A 1 157 ALA 157 149 149 ALA ALA A . n A 1 158 GLN 158 150 150 GLN GLN A . n A 1 159 GLY 159 151 151 GLY GLY A . n A 1 160 MET 160 152 152 MET MET A . n A 1 161 CYS 161 153 153 CYS CYS A . n A 1 162 LEU 162 154 154 LEU LEU A . n A 1 163 GLY 163 155 155 GLY GLY A . n A 1 164 GLN 164 156 156 GLN GLN A . n A 1 165 ALA 165 157 157 ALA ALA A . n A 1 166 LEU 166 158 158 LEU LEU A . n A 1 167 ASP 167 159 159 ASP ASP A . n A 1 168 LEU 168 160 160 LEU LEU A . n A 1 169 ALA 169 161 161 ALA ALA A . n A 1 170 ALA 170 162 162 ALA ALA A . n A 1 171 GLU 171 163 163 GLU GLU A . n A 1 172 ASN 172 164 164 ASN ASN A . n A 1 173 ARG 173 165 165 ARG ALA A . n A 1 174 LEU 174 166 166 LEU ALA A . n A 1 175 ILE 175 167 167 ILE ILE A . n A 1 176 SER 176 168 168 SER SER A . n A 1 177 LEU 177 169 169 LEU LEU A . n A 1 178 GLU 178 170 170 GLU GLU A . n A 1 179 GLU 179 171 171 GLU GLU A . n A 1 180 LEU 180 172 172 LEU LEU A . n A 1 181 GLU 181 173 173 GLU GLU A . n A 1 182 THR 182 174 174 THR THR A . n A 1 183 ILE 183 175 175 ILE ILE A . n A 1 184 HIS 184 176 176 HIS HIS A . n A 1 185 ARG 185 177 177 ARG ARG A . n A 1 186 ASN 186 178 178 ASN ASN A . n A 1 187 LYS 187 179 179 LYS LYS A . n A 1 188 THR 188 180 180 THR THR A . n A 1 189 GLY 189 181 181 GLY GLY A . n A 1 190 ALA 190 182 182 ALA ALA A . n A 1 191 LEU 191 183 183 LEU LEU A . n A 1 192 MET 192 184 184 MET MET A . n A 1 193 ARG 193 185 185 ARG ARG A . n A 1 194 CYS 194 186 186 CYS CYS A . n A 1 195 ALA 195 187 187 ALA ALA A . n A 1 196 ILE 196 188 188 ILE ILE A . n A 1 197 ARG 197 189 189 ARG ARG A . n A 1 198 LEU 198 190 190 LEU LEU A . n A 1 199 GLY 199 191 191 GLY GLY A . n A 1 200 ALA 200 192 192 ALA ALA A . n A 1 201 LEU 201 193 193 LEU LEU A . n A 1 202 ALA 202 194 194 ALA ALA A . n A 1 203 ALA 203 195 195 ALA ALA A . n A 1 204 GLY 204 196 196 GLY GLY A . n A 1 205 GLU 205 197 197 GLU GLU A . n A 1 206 LYS 206 198 198 LYS LYS A . n A 1 207 GLY 207 199 199 GLY GLY A . n A 1 208 ARG 208 200 200 ARG ARG A . n A 1 209 ALA 209 201 201 ALA ALA A . n A 1 210 MET 210 202 202 MET MET A . n A 1 211 LEU 211 203 203 LEU LEU A . n A 1 212 PRO 212 204 204 PRO PRO A . n A 1 213 HIS 213 205 205 HIS HIS A . n A 1 214 LEU 214 206 206 LEU LEU A . n A 1 215 ASP 215 207 207 ASP ASP A . n A 1 216 ARG 216 208 208 ARG ARG A . n A 1 217 TYR 217 209 209 TYR TYR A . n A 1 218 ALA 218 210 210 ALA ALA A . n A 1 219 GLU 219 211 211 GLU GLU A . n A 1 220 ALA 220 212 212 ALA ALA A . n A 1 221 VAL 221 213 213 VAL VAL A . n A 1 222 GLY 222 214 214 GLY GLY A . n A 1 223 LEU 223 215 215 LEU LEU A . n A 1 224 ALA 224 216 216 ALA ALA A . n A 1 225 PHE 225 217 217 PHE PHE A . n A 1 226 GLN 226 218 218 GLN GLN A . n A 1 227 VAL 227 219 219 VAL VAL A . n A 1 228 GLN 228 220 220 GLN GLN A . n A 1 229 ASP 229 221 221 ASP ASP A . n A 1 230 ASP 230 222 222 ASP ASP A . n A 1 231 ILE 231 223 223 ILE ILE A . n A 1 232 LEU 232 224 224 LEU LEU A . n A 1 233 ASP 233 225 225 ASP ASP A . n A 1 234 ILE 234 226 226 ILE ILE A . n A 1 235 ILE 235 227 227 ILE ILE A . n A 1 236 SER 236 228 228 SER SER A . n A 1 237 ASP 237 229 229 ASP ASP A . n A 1 238 THR 238 230 ? ? ? A . n A 1 239 GLU 239 231 ? ? ? A . n A 1 240 THR 240 232 ? ? ? A . n A 1 241 LEU 241 233 ? ? ? A . n A 1 242 GLY 242 234 ? ? ? A . n A 1 243 LYS 243 235 ? ? ? A . n A 1 244 PRO 244 236 ? ? ? A . n A 1 245 GLN 245 237 ? ? ? A . n A 1 246 GLY 246 238 ? ? ? A . n A 1 247 SER 247 239 ? ? ? A . n A 1 248 ASP 248 240 ? ? ? A . n A 1 249 GLN 249 241 ? ? ? A . n A 1 250 GLU 250 242 ? ? ? A . n A 1 251 LEU 251 243 ? ? ? A . n A 1 252 ASN 252 244 ? ? ? A . n A 1 253 LYS 253 245 245 LYS LYS A . n A 1 254 SER 254 246 246 SER SER A . n A 1 255 THR 255 247 247 THR THR A . n A 1 256 TYR 256 248 248 TYR TYR A . n A 1 257 PRO 257 249 249 PRO PRO A . n A 1 258 ALA 258 250 250 ALA ALA A . n A 1 259 LEU 259 251 251 LEU LEU A . n A 1 260 LEU 260 252 252 LEU LEU A . n A 1 261 GLY 261 253 253 GLY GLY A . n A 1 262 LEU 262 254 254 LEU LEU A . n A 1 263 GLU 263 255 255 GLU GLU A . n A 1 264 GLY 264 256 256 GLY GLY A . n A 1 265 ALA 265 257 257 ALA ALA A . n A 1 266 GLN 266 258 258 GLN GLN A . n A 1 267 GLN 267 259 259 GLN GLN A . n A 1 268 LYS 268 260 260 LYS LYS A . n A 1 269 ALA 269 261 261 ALA ALA A . n A 1 270 HIS 270 262 262 HIS HIS A . n A 1 271 THR 271 263 263 THR THR A . n A 1 272 LEU 272 264 264 LEU LEU A . n A 1 273 LEU 273 265 265 LEU LEU A . n A 1 274 GLN 274 266 266 GLN GLN A . n A 1 275 GLU 275 267 267 GLU GLU A . n A 1 276 ALA 276 268 268 ALA ALA A . n A 1 277 LEU 277 269 269 LEU LEU A . n A 1 278 LEU 278 270 270 LEU LEU A . n A 1 279 ALA 279 271 271 ALA ALA A . n A 1 280 LEU 280 272 272 LEU LEU A . n A 1 281 GLU 281 273 273 GLU GLU A . n A 1 282 ALA 282 274 274 ALA ALA A . n A 1 283 ILE 283 275 275 ILE ILE A . n A 1 284 PRO 284 276 276 PRO PRO A . n A 1 285 TYR 285 277 277 TYR TYR A . n A 1 286 ASN 286 278 278 ASN ASN A . n A 1 287 THR 287 279 279 THR THR A . n A 1 288 GLU 288 280 280 GLU GLU A . n A 1 289 HIS 289 281 281 HIS HIS A . n A 1 290 LEU 290 282 282 LEU LEU A . n A 1 291 GLU 291 283 283 GLU GLU A . n A 1 292 GLU 292 284 284 GLU GLU A . n A 1 293 PHE 293 285 285 PHE PHE A . n A 1 294 ALA 294 286 286 ALA ALA A . n A 1 295 ARG 295 287 287 ARG ARG A . n A 1 296 TYR 296 288 288 TYR TYR A . n A 1 297 VAL 297 289 289 VAL VAL A . n A 1 298 VAL 298 290 290 VAL VAL A . n A 1 299 GLU 299 291 291 GLU GLU A . n A 1 300 ARG 300 292 292 ARG ARG A . n A 1 301 LYS 301 293 293 LYS LYS A . n A 1 302 ASN 302 294 294 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 295 1 HOH HOH A . B 2 HOH 2 296 2 HOH HOH A . B 2 HOH 3 297 3 HOH HOH A . B 2 HOH 4 298 4 HOH HOH A . B 2 HOH 5 299 6 HOH HOH A . B 2 HOH 6 300 8 HOH HOH A . B 2 HOH 7 301 10 HOH HOH A . B 2 HOH 8 302 13 HOH HOH A . B 2 HOH 9 303 14 HOH HOH A . B 2 HOH 10 304 22 HOH HOH A . B 2 HOH 11 305 23 HOH HOH A . B 2 HOH 12 306 24 HOH HOH A . B 2 HOH 13 307 25 HOH HOH A . B 2 HOH 14 308 26 HOH HOH A . B 2 HOH 15 309 27 HOH HOH A . B 2 HOH 16 310 28 HOH HOH A . B 2 HOH 17 311 29 HOH HOH A . B 2 HOH 18 312 30 HOH HOH A . B 2 HOH 19 313 31 HOH HOH A . B 2 HOH 20 314 32 HOH HOH A . B 2 HOH 21 315 33 HOH HOH A . B 2 HOH 22 316 34 HOH HOH A . B 2 HOH 23 317 35 HOH HOH A . B 2 HOH 24 318 36 HOH HOH A . B 2 HOH 25 319 37 HOH HOH A . B 2 HOH 26 320 38 HOH HOH A . B 2 HOH 27 321 39 HOH HOH A . B 2 HOH 28 322 40 HOH HOH A . B 2 HOH 29 323 41 HOH HOH A . B 2 HOH 30 324 42 HOH HOH A . B 2 HOH 31 325 43 HOH HOH A . B 2 HOH 32 326 44 HOH HOH A . B 2 HOH 33 327 45 HOH HOH A . B 2 HOH 34 328 46 HOH HOH A . B 2 HOH 35 329 47 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 9 ? CG ? A GLN 17 CG 2 1 Y 1 A GLN 9 ? CD ? A GLN 17 CD 3 1 Y 1 A GLN 9 ? OE1 ? A GLN 17 OE1 4 1 Y 1 A GLN 9 ? NE2 ? A GLN 17 NE2 5 1 Y 1 A TYR 36 ? CG ? A TYR 44 CG 6 1 Y 1 A TYR 36 ? CD1 ? A TYR 44 CD1 7 1 Y 1 A TYR 36 ? CD2 ? A TYR 44 CD2 8 1 Y 1 A TYR 36 ? CE1 ? A TYR 44 CE1 9 1 Y 1 A TYR 36 ? CE2 ? A TYR 44 CE2 10 1 Y 1 A TYR 36 ? CZ ? A TYR 44 CZ 11 1 Y 1 A TYR 36 ? OH ? A TYR 44 OH 12 1 Y 1 A ARG 165 ? CG ? A ARG 173 CG 13 1 Y 1 A ARG 165 ? CD ? A ARG 173 CD 14 1 Y 1 A ARG 165 ? NE ? A ARG 173 NE 15 1 Y 1 A ARG 165 ? CZ ? A ARG 173 CZ 16 1 Y 1 A ARG 165 ? NH1 ? A ARG 173 NH1 17 1 Y 1 A ARG 165 ? NH2 ? A ARG 173 NH2 18 1 Y 1 A LEU 166 ? CG ? A LEU 174 CG 19 1 Y 1 A LEU 166 ? CD1 ? A LEU 174 CD1 20 1 Y 1 A LEU 166 ? CD2 ? A LEU 174 CD2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 RESOLVE 'model building' . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 SHELX phasing . ? 6 RESOLVE phasing . ? 7 # _cell.entry_id 3P8R _cell.length_a 79.588 _cell.length_b 79.588 _cell.length_c 215.315 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3P8R _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3P8R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_percent_sol 58.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.1M BIS-TRIS, PH 6.5, 25% PEG3350, 200MM AMMONIUM ACETATE, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-07-21 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9790 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength 0.9790 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3P8R _reflns.observed_criterion_sigma_I -5.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.000 _reflns.d_resolution_high 2.34 _reflns.number_obs 17856 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06400 _reflns.pdbx_netI_over_sigmaI 10.7000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 17.900 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.34 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 0.900 _reflns_shell.pdbx_redundancy 9.70 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3P8R _refine.ls_number_reflns_obs 14179 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.00 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.33 _refine.ls_R_factor_obs 0.22961 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22781 _refine.ls_R_factor_R_free 0.29043 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 3.2 _refine.ls_number_reflns_R_free 464 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.915 _refine.B_iso_mean 82.503 _refine.aniso_B[1][1] 0.46 _refine.aniso_B[2][2] 0.46 _refine.aniso_B[3][3] -0.69 _refine.aniso_B[1][2] 0.23 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.282 _refine.overall_SU_ML 0.220 _refine.overall_SU_B 10.929 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.345 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2039 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 35 _refine_hist.number_atoms_total 2074 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 40.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.021 ? 2076 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.006 1.979 ? 2814 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.753 5.000 ? 267 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.435 24.792 ? 96 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.845 15.000 ? 355 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.771 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.059 0.200 ? 328 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 1566 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.192 2.000 ? 1331 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 5.528 3.000 ? 2105 'X-RAY DIFFRACTION' ? r_scbond_it 7.403 4.000 ? 745 'X-RAY DIFFRACTION' ? r_scangle_it 11.517 7.000 ? 708 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.number_reflns_R_work 1012 _refine_ls_shell.R_factor_R_work 0.399 _refine_ls_shell.percent_reflns_obs 99.05 _refine_ls_shell.R_factor_R_free 0.467 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 32 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3P8R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3P8R _struct.title 'CRYSTAL STRUCTURE OF POLYPRENYL SYNTHASE FROM Vibrio cholerae' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3P8R _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;ISOPRENYL SYNTHASE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NYSGRC, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, New York SGX Research Center for Structural Genomics, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9KTL2_VIBCH _struct_ref.pdbx_db_accession Q9KTL2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHD DLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAA ENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQE LNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYNTEHLEEFARYVVERKN ; _struct_ref.pdbx_align_begin 3 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3P8R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 11 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 302 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9KTL2 _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 294 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 294 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3P8R MET A 1 ? UNP Q9KTL2 ? ? 'expression tag' -7 1 1 3P8R ALA A 2 ? UNP Q9KTL2 ? ? 'expression tag' -6 2 1 3P8R HIS A 3 ? UNP Q9KTL2 ? ? 'expression tag' -5 3 1 3P8R HIS A 4 ? UNP Q9KTL2 ? ? 'expression tag' -4 4 1 3P8R HIS A 5 ? UNP Q9KTL2 ? ? 'expression tag' -3 5 1 3P8R HIS A 6 ? UNP Q9KTL2 ? ? 'expression tag' -2 6 1 3P8R HIS A 7 ? UNP Q9KTL2 ? ? 'expression tag' -1 7 1 3P8R HIS A 8 ? UNP Q9KTL2 ? ? 'expression tag' 0 8 1 3P8R SER A 9 ? UNP Q9KTL2 ? ? 'expression tag' 1 9 1 3P8R LEU A 10 ? UNP Q9KTL2 ? ? 'expression tag' 2 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3590 ? 1 MORE -41 ? 1 'SSA (A^2)' 21250 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_566 x,x-y+1,-z+7/6 0.5000000000 0.8660254038 0.0000000000 -39.7940000000 0.8660254038 -0.5000000000 0.0000000000 68.9252298364 0.0000000000 0.0000000000 -1.0000000000 251.2008333333 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 11 ? ARG A 30 ? GLU A 3 ARG A 22 1 ? 20 HELX_P HELX_P2 2 PRO A 37 ? LEU A 48 ? PRO A 29 LEU A 40 1 ? 12 HELX_P HELX_P3 3 ARG A 52 ? MET A 64 ? ARG A 44 MET A 56 1 ? 13 HELX_P HELX_P4 4 GLU A 68 ? ASP A 71 ? GLU A 60 ASP A 63 5 ? 4 HELX_P HELX_P5 5 LEU A 72 ? ASP A 91 ? LEU A 64 ASP A 83 1 ? 20 HELX_P HELX_P6 6 LEU A 92 ? ASP A 97 ? LEU A 84 ASP A 89 1 ? 6 HELX_P HELX_P7 7 GLU A 113 ? GLY A 134 ? GLU A 105 GLY A 126 1 ? 22 HELX_P HELX_P8 8 SER A 137 ? THR A 142 ? SER A 129 THR A 134 1 ? 6 HELX_P HELX_P9 9 GLN A 143 ? GLY A 156 ? GLN A 135 GLY A 148 1 ? 14 HELX_P HELX_P10 10 GLY A 159 ? ALA A 170 ? GLY A 151 ALA A 162 1 ? 12 HELX_P HELX_P11 11 SER A 176 ? THR A 188 ? SER A 168 THR A 180 1 ? 13 HELX_P HELX_P12 12 THR A 188 ? ALA A 202 ? THR A 180 ALA A 194 1 ? 15 HELX_P HELX_P13 13 GLY A 204 ? ALA A 209 ? GLY A 196 ALA A 201 1 ? 6 HELX_P HELX_P14 14 MET A 210 ? ILE A 235 ? MET A 202 ILE A 227 1 ? 26 HELX_P HELX_P15 15 THR A 255 ? GLU A 281 ? THR A 247 GLU A 273 1 ? 27 HELX_P HELX_P16 16 THR A 287 ? ARG A 300 ? THR A 279 ARG A 292 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A ILE 23 ? ? N A PRO 24 ? ? CD A PRO 24 ? ? 110.23 128.40 -18.17 2.10 Y 2 1 C A LEU 28 ? ? N A PRO 29 ? ? CD A PRO 29 ? ? 115.75 128.40 -12.65 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 0 ? ? -76.63 22.41 2 1 LEU A 5 ? ? -56.93 -4.37 3 1 ILE A 31 ? ? -58.51 -3.60 4 1 TYR A 36 ? ? -75.09 -73.60 5 1 LEU A 40 ? ? -82.47 -74.17 6 1 SER A 129 ? ? -56.46 171.06 7 1 LEU A 160 ? ? -71.68 -73.06 8 1 THR A 180 ? ? -132.53 -31.12 9 1 ASP A 221 ? ? -71.47 -74.08 10 1 ILE A 227 ? ? -101.05 45.30 11 1 SER A 228 ? ? -140.97 -1.75 12 1 LEU A 252 ? ? -143.06 -11.90 13 1 PRO A 276 ? ? -75.28 30.31 14 1 ASN A 278 ? ? -66.18 90.38 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -7 ? A MET 1 2 1 Y 1 A ALA -6 ? A ALA 2 3 1 Y 1 A HIS -5 ? A HIS 3 4 1 Y 1 A HIS -4 ? A HIS 4 5 1 Y 1 A HIS -3 ? A HIS 5 6 1 Y 1 A ASP 90 ? A ASP 98 7 1 Y 1 A GLU 91 ? A GLU 99 8 1 Y 1 A LEU 92 ? A LEU 100 9 1 Y 1 A ARG 93 ? A ARG 101 10 1 Y 1 A ARG 94 ? A ARG 102 11 1 Y 1 A GLY 95 ? A GLY 103 12 1 Y 1 A LYS 96 ? A LYS 104 13 1 Y 1 A PRO 97 ? A PRO 105 14 1 Y 1 A THR 98 ? A THR 106 15 1 Y 1 A CYS 99 ? A CYS 107 16 1 Y 1 A HIS 100 ? A HIS 108 17 1 Y 1 A ILE 101 ? A ILE 109 18 1 Y 1 A GLN 102 ? A GLN 110 19 1 Y 1 A PHE 103 ? A PHE 111 20 1 Y 1 A THR 230 ? A THR 238 21 1 Y 1 A GLU 231 ? A GLU 239 22 1 Y 1 A THR 232 ? A THR 240 23 1 Y 1 A LEU 233 ? A LEU 241 24 1 Y 1 A GLY 234 ? A GLY 242 25 1 Y 1 A LYS 235 ? A LYS 243 26 1 Y 1 A PRO 236 ? A PRO 244 27 1 Y 1 A GLN 237 ? A GLN 245 28 1 Y 1 A GLY 238 ? A GLY 246 29 1 Y 1 A SER 239 ? A SER 247 30 1 Y 1 A ASP 240 ? A ASP 248 31 1 Y 1 A GLN 241 ? A GLN 249 32 1 Y 1 A GLU 242 ? A GLU 250 33 1 Y 1 A LEU 243 ? A LEU 251 34 1 Y 1 A ASN 244 ? A ASN 252 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 3P8R _atom_sites.fract_transf_matrix[1][1] 0.012565 _atom_sites.fract_transf_matrix[1][2] 0.007254 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014508 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004644 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_