HEADER HYDROLASE/ANTIBIOTIC 19-OCT-10 3PAE TITLE CRYSTAL STRUCTURE OF THE K84D MUTANT OF OXA-24/40 IN COMPLEX WITH TITLE 2 DORIPENEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 32-275; COMPND 5 SYNONYM: BETA-LACTAMASE OXA-33, BETALACTAMASE OXA24, CARBAPENEM- COMPND 6 HYDROLYZING BETA-LACTAMASE OXA-40, CARBAPENEM-HYDROLYZING COMPND 7 OXACILLINASE, CLASS D BETA-LACTAMASE OXA-40, OXA-24 CLASS D BETA- COMPND 8 LACTAMASE, OXA40; COMPND 9 EC: 3.5.2.6; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: BLAOXA-33, BLA-OXA-40, BLAOXA-24, BLAOXA-40, OXA-24, OXA40; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS HYDROLASE, CARBAPENEMASE, HYDROLASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.A.POWERS,D.A.LEONARD,K.D.SCHNEIDER REVDAT 5 06-SEP-23 3PAE 1 REMARK SEQADV LINK REVDAT 4 05-OCT-16 3PAE 1 FORMUL HETNAM HETSYN REVDAT 3 25-NOV-15 3PAE 1 FORMUL HET HETATM HETNAM REVDAT 3 2 1 VERSN REVDAT 2 23-MAR-11 3PAE 1 JRNL REVDAT 1 19-JAN-11 3PAE 0 JRNL AUTH K.D.SCHNEIDER,C.J.ORTEGA,N.A.RENCK,R.A.BONOMO,R.A.POWERS, JRNL AUTH 2 D.A.LEONARD JRNL TITL STRUCTURES OF THE CLASS D CARBAPENEMASE OXA-24 FROM JRNL TITL 2 ACINETOBACTER BAUMANNII IN COMPLEX WITH DORIPENEM. JRNL REF J.MOL.BIOL. V. 406 583 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21215758 JRNL DOI 10.1016/J.JMB.2010.12.042 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.D.SCHNEIDER,M.E.KARPEN,R.A.BONOMO,D.A.LEONARD,R.A.POWERS REMARK 1 TITL THE 1.4 A CRYSTAL STRUCTURE OF THE CLASS D BETA-LACTAMASE REMARK 1 TITL 2 OXA-1 COMPLEXED WITH DORIPENEM REMARK 1 REF BIOCHEMISTRY V. 48 11840 2009 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 19919101 REMARK 1 DOI 10.1021/BI901690R REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 48197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2574 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3207 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 191 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 314 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.18000 REMARK 3 B22 (A**2) : -2.18000 REMARK 3 B33 (A**2) : 4.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.899 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4014 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5429 ; 1.522 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 490 ; 5.347 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;41.826 ;25.543 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 738 ;17.655 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.466 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 600 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2946 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2422 ; 0.866 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3899 ; 1.612 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1592 ; 2.557 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1528 ; 4.251 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50780 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2JC7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL, 2.0 M AMMONIUM REMARK 280 SULFATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.72500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.36250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.08750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 31 REMARK 465 MET B 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 470 GLU B 254 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 SO4 B 3 O HOH B 402 1.99 REMARK 500 OG SER B 81 OAD 4J6 B 300 2.09 REMARK 500 O PRO B 79 OG1 THR B 82 2.12 REMARK 500 OG SER A 81 OAD 4J6 A 300 2.14 REMARK 500 O GLU B 254 O HOH B 409 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 66.23 -152.51 REMARK 500 ALA A 80 -127.72 52.81 REMARK 500 THR A 157 11.56 53.87 REMARK 500 ASN A 165 11.93 -151.10 REMARK 500 ASN A 211 62.69 30.68 REMARK 500 GLU A 254 127.75 -31.86 REMARK 500 ALA B 69 65.55 -151.40 REMARK 500 ALA B 80 -124.03 63.12 REMARK 500 THR B 157 11.09 57.11 REMARK 500 ASN B 165 11.57 -147.05 REMARK 500 ASN B 211 -112.28 35.32 REMARK 500 GLU B 254 126.68 -34.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 4J6 IN THE STRUCTURE REPRESENTS THE DELTA 2 TAUTOMER, IN WHICH A REMARK 600 DOUBLE BOND IS PRESENT BETWEEN CARBONS 2 AND 3 (ATOMS CAS AND CAZ). REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4J6 A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4J6 B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ISG RELATED DB: PDB REMARK 900 THE NON-CARBAPENEMASE OXA-1 IN COMPLEX WITH THE SAME DRUG, REMARK 900 DORIPENEM. REMARK 900 RELATED ID: 3PAG RELATED DB: PDB DBREF 3PAE A 32 275 UNP Q8RLA6 Q8RLA6_ACIBA 32 275 DBREF 3PAE B 32 275 UNP Q8RLA6 Q8RLA6_ACIBA 32 275 SEQADV 3PAE MET A 31 UNP Q8RLA6 INITIATING METHIONINE SEQADV 3PAE ASP A 84 UNP Q8RLA6 LYS 84 ENGINEERED MUTATION SEQADV 3PAE MET B 31 UNP Q8RLA6 INITIATING METHIONINE SEQADV 3PAE ASP B 84 UNP Q8RLA6 LYS 84 ENGINEERED MUTATION SEQRES 1 A 245 MET HIS ILE SER SER GLN GLN HIS GLU LYS ALA ILE LYS SEQRES 2 A 245 SER TYR PHE ASP GLU ALA GLN THR GLN GLY VAL ILE ILE SEQRES 3 A 245 ILE LYS GLU GLY LYS ASN LEU SER THR TYR GLY ASN ALA SEQRES 4 A 245 LEU ALA ARG ALA ASN LYS GLU TYR VAL PRO ALA SER THR SEQRES 5 A 245 PHE ASP MET LEU ASN ALA LEU ILE GLY LEU GLU ASN HIS SEQRES 6 A 245 LYS ALA THR THR ASN GLU ILE PHE LYS TRP ASP GLY LYS SEQRES 7 A 245 LYS ARG THR TYR PRO MET TRP GLU LYS ASP MET THR LEU SEQRES 8 A 245 GLY GLU ALA MET ALA LEU SER ALA VAL PRO VAL TYR GLN SEQRES 9 A 245 GLU LEU ALA ARG ARG THR GLY LEU GLU LEU MET GLN LYS SEQRES 10 A 245 GLU VAL LYS ARG VAL ASN PHE GLY ASN THR ASN ILE GLY SEQRES 11 A 245 THR GLN VAL ASP ASN PHE TRP LEU VAL GLY PRO LEU LYS SEQRES 12 A 245 ILE THR PRO VAL GLN GLU VAL ASN PHE ALA ASP ASP LEU SEQRES 13 A 245 ALA HIS ASN ARG LEU PRO PHE LYS LEU GLU THR GLN GLU SEQRES 14 A 245 GLU VAL LYS LYS MET LEU LEU ILE LYS GLU VAL ASN GLY SEQRES 15 A 245 SER LYS ILE TYR ALA LYS SER GLY TRP GLY MET GLY VAL SEQRES 16 A 245 THR PRO GLN VAL GLY TRP LEU THR GLY TRP VAL GLU GLN SEQRES 17 A 245 ALA ASN GLY LYS LYS ILE PRO PHE SER LEU ASN LEU GLU SEQRES 18 A 245 MET LYS GLU GLY MET SER GLY SER ILE ARG ASN GLU ILE SEQRES 19 A 245 THR TYR LYS SER LEU GLU ASN LEU GLY ILE ILE SEQRES 1 B 245 MET HIS ILE SER SER GLN GLN HIS GLU LYS ALA ILE LYS SEQRES 2 B 245 SER TYR PHE ASP GLU ALA GLN THR GLN GLY VAL ILE ILE SEQRES 3 B 245 ILE LYS GLU GLY LYS ASN LEU SER THR TYR GLY ASN ALA SEQRES 4 B 245 LEU ALA ARG ALA ASN LYS GLU TYR VAL PRO ALA SER THR SEQRES 5 B 245 PHE ASP MET LEU ASN ALA LEU ILE GLY LEU GLU ASN HIS SEQRES 6 B 245 LYS ALA THR THR ASN GLU ILE PHE LYS TRP ASP GLY LYS SEQRES 7 B 245 LYS ARG THR TYR PRO MET TRP GLU LYS ASP MET THR LEU SEQRES 8 B 245 GLY GLU ALA MET ALA LEU SER ALA VAL PRO VAL TYR GLN SEQRES 9 B 245 GLU LEU ALA ARG ARG THR GLY LEU GLU LEU MET GLN LYS SEQRES 10 B 245 GLU VAL LYS ARG VAL ASN PHE GLY ASN THR ASN ILE GLY SEQRES 11 B 245 THR GLN VAL ASP ASN PHE TRP LEU VAL GLY PRO LEU LYS SEQRES 12 B 245 ILE THR PRO VAL GLN GLU VAL ASN PHE ALA ASP ASP LEU SEQRES 13 B 245 ALA HIS ASN ARG LEU PRO PHE LYS LEU GLU THR GLN GLU SEQRES 14 B 245 GLU VAL LYS LYS MET LEU LEU ILE LYS GLU VAL ASN GLY SEQRES 15 B 245 SER LYS ILE TYR ALA LYS SER GLY TRP GLY MET GLY VAL SEQRES 16 B 245 THR PRO GLN VAL GLY TRP LEU THR GLY TRP VAL GLU GLN SEQRES 17 B 245 ALA ASN GLY LYS LYS ILE PRO PHE SER LEU ASN LEU GLU SEQRES 18 B 245 MET LYS GLU GLY MET SER GLY SER ILE ARG ASN GLU ILE SEQRES 19 B 245 THR TYR LYS SER LEU GLU ASN LEU GLY ILE ILE HET 4J6 A 300 27 HET SO4 A 1 5 HET 4J6 B 300 27 HET SO4 B 2 5 HET SO4 B 3 5 HETNAM 4J6 (4R,5S)-5-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-4-METHYL- HETNAM 2 4J6 3-({(3S,5S)-5-[(SULFAMOYLAMINO)METHYL]PYRROLIDIN-3- HETNAM 3 4J6 YL}SULFANYL)-4,5-DIHYDRO-1H-PYRROLE-2-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETSYN 4J6 DORIPENEM(OPEN FORM, PYRROLINE TAUTOMER FORM 1, SP2 HETSYN 2 4J6 CONNECTION TO THIO) FORMUL 3 4J6 2(C15 H26 N4 O6 S2) FORMUL 4 SO4 3(O4 S 2-) FORMUL 8 HOH *314(H2 O) HELIX 1 1 SER A 34 ALA A 49 1 16 HELIX 2 2 ALA A 69 LYS A 75 5 7 HELIX 3 3 PRO A 79 THR A 82 5 4 HELIX 4 4 PHE A 83 ASN A 94 1 12 HELIX 5 5 TYR A 112 GLU A 116 5 5 HELIX 6 6 THR A 120 SER A 128 1 9 HELIX 7 7 ALA A 129 GLY A 141 1 13 HELIX 8 8 GLY A 141 ASN A 153 1 13 HELIX 9 9 THR A 175 HIS A 188 1 14 HELIX 10 10 LYS A 194 MET A 204 1 11 HELIX 11 11 GLY A 258 LEU A 272 1 15 HELIX 12 12 SER B 34 ALA B 49 1 16 HELIX 13 13 ALA B 69 LYS B 75 5 7 HELIX 14 14 PRO B 79 THR B 82 5 4 HELIX 15 15 PHE B 83 ASN B 94 1 12 HELIX 16 16 TYR B 112 GLU B 116 5 5 HELIX 17 17 THR B 120 SER B 128 1 9 HELIX 18 18 ALA B 129 GLY B 141 1 13 HELIX 19 19 GLY B 141 ASN B 153 1 13 HELIX 20 20 THR B 175 HIS B 188 1 14 HELIX 21 21 LYS B 194 MET B 204 1 11 HELIX 22 22 GLY B 258 LEU B 272 1 15 SHEET 1 A 6 ASN A 62 GLY A 67 0 SHEET 2 A 6 GLY A 53 GLU A 59 -1 N ILE A 57 O SER A 64 SHEET 3 A 6 LYS A 243 MET A 252 -1 O ASN A 249 N VAL A 54 SHEET 4 A 6 GLN A 228 GLU A 237 -1 N LEU A 232 O LEU A 248 SHEET 5 A 6 SER A 213 GLY A 222 -1 N LYS A 214 O GLU A 237 SHEET 6 A 6 LEU A 206 VAL A 210 -1 N LYS A 208 O ILE A 215 SHEET 1 B 6 ASN B 62 GLY B 67 0 SHEET 2 B 6 GLY B 53 GLU B 59 -1 N ILE B 57 O SER B 64 SHEET 3 B 6 LYS B 243 MET B 252 -1 O ASN B 249 N VAL B 54 SHEET 4 B 6 GLN B 228 GLU B 237 -1 N GLY B 230 O LEU B 250 SHEET 5 B 6 SER B 213 GLY B 222 -1 N LYS B 218 O THR B 233 SHEET 6 B 6 LEU B 206 VAL B 210 -1 N VAL B 210 O SER B 213 LINK OG SER A 81 CAJ 4J6 A 300 1555 1555 1.30 LINK OG SER B 81 CAJ 4J6 B 300 1555 1555 1.29 CISPEP 1 GLY A 170 PRO A 171 0 6.73 CISPEP 2 THR A 226 PRO A 227 0 -4.10 CISPEP 3 GLY B 170 PRO B 171 0 2.82 CISPEP 4 THR B 226 PRO B 227 0 -4.00 SITE 1 AC1 18 HOH A 8 ALA A 80 SER A 81 TRP A 115 SITE 2 AC1 18 LEU A 127 SER A 128 LEU A 168 SER A 219 SITE 3 AC1 18 GLY A 220 TRP A 221 MET A 223 GLY A 258 SITE 4 AC1 18 SER A 259 ARG A 261 HOH A 284 HOH A 390 SITE 5 AC1 18 HOH A 392 HOH A 406 SITE 1 AC2 5 GLY A 141 LEU A 142 GLU A 143 HOH A 288 SITE 2 AC2 5 HOH A 364 SITE 1 AC3 18 ALA B 80 SER B 81 TRP B 115 LEU B 127 SITE 2 AC3 18 SER B 128 VAL B 130 LEU B 168 SER B 219 SITE 3 AC3 18 GLY B 220 TRP B 221 MET B 223 GLY B 258 SITE 4 AC3 18 SER B 259 ARG B 261 HOH B 314 HOH B 351 SITE 5 AC3 18 HOH B 355 HOH B 401 SITE 1 AC4 4 HOH A 356 GLY B 141 LEU B 142 GLU B 143 SITE 1 AC5 7 GLU B 76 TYR B 77 VAL B 78 VAL B 225 SITE 2 AC5 7 PRO B 227 VAL B 229 HOH B 402 CRYST1 102.334 102.334 85.450 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009772 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011703 0.00000