HEADER TRANSFERASE 19-OCT-10 3PAJ TITLE 2.00 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A QUINOLINATE TITLE 2 PHOSPHORIBOSYLTRANSFERASE FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. TITLE 3 N16961 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE, CARBOXYLATING; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.19; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: VC_2422; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS TIM BARREL, NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE, PYRIDINE- 2, 3- KEYWDS 2 DICARBOXYLATE, 5-PHOSPHO-ALPHA-D-RIBOSE 1-DIPHOSPHATE, CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, GUINOLINATE KEYWDS 4 PHOSPHORIBOSYLTRANSFERASE, DE NOVO SYNTHESIS OF NAD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.HALAVATY,G.MINASOV,J.WINSOR,I.DUBROVSKA,L.SHUVALOVA,S.PETERSON, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 3 06-SEP-23 3PAJ 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3PAJ 1 REMARK REVDAT 1 03-NOV-10 3PAJ 0 JRNL AUTH A.S.HALAVATY,G.MINASOV,J.WINSOR,I.DUBROVSKA,L.SHUVALOVA, JRNL AUTH 2 S.PETERSON,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 2.00 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A QUINOLINATE JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASE FROM VIBRIO CHOLERAE O1 BIOVAR JRNL TITL 3 ELTOR STR. N16961 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1908 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2537 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.1660 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4542 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 414 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.770 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4816 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3209 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6549 ; 1.609 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7896 ; 0.973 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 641 ; 2.058 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;27.254 ;24.952 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 867 ; 9.320 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;10.904 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 764 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5515 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 914 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3094 ; 0.690 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1272 ; 0.185 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4993 ; 1.323 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1722 ; 2.406 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1556 ; 4.062 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7235 26.0673 39.3947 REMARK 3 T TENSOR REMARK 3 T11: 0.0693 T22: 0.0907 REMARK 3 T33: 0.0519 T12: 0.0202 REMARK 3 T13: 0.0355 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 0.7756 L22: 0.8152 REMARK 3 L33: 0.7274 L12: -0.4554 REMARK 3 L13: 0.5494 L23: -0.3232 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: -0.1148 S13: -0.1218 REMARK 3 S21: 0.2027 S22: 0.1334 S23: 0.1780 REMARK 3 S31: -0.0098 S32: -0.2166 S33: -0.1135 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7814 41.2658 19.8314 REMARK 3 T TENSOR REMARK 3 T11: 0.0197 T22: 0.1003 REMARK 3 T33: 0.0857 T12: 0.0141 REMARK 3 T13: 0.0003 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 1.7504 L22: 1.5592 REMARK 3 L33: 1.4133 L12: -0.6315 REMARK 3 L13: 1.1161 L23: -0.6667 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.0438 S13: -0.0700 REMARK 3 S21: -0.0561 S22: 0.1364 S23: 0.2706 REMARK 3 S31: -0.0987 S32: -0.1856 S33: -0.1002 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5784 32.8439 18.2021 REMARK 3 T TENSOR REMARK 3 T11: 0.0310 T22: 0.0144 REMARK 3 T33: 0.0284 T12: 0.0136 REMARK 3 T13: -0.0013 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.0635 L22: 1.2334 REMARK 3 L33: 1.2943 L12: -0.1409 REMARK 3 L13: 0.4772 L23: 0.0091 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: 0.0884 S13: -0.0749 REMARK 3 S21: -0.1820 S22: -0.0447 S23: -0.0571 REMARK 3 S31: 0.0244 S32: 0.0678 S33: -0.0171 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 174 B 294 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4259 36.3272 42.2963 REMARK 3 T TENSOR REMARK 3 T11: 0.0711 T22: 0.0661 REMARK 3 T33: 0.0707 T12: -0.0063 REMARK 3 T13: -0.0355 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.7259 L22: 1.4313 REMARK 3 L33: 1.4947 L12: 0.0250 REMARK 3 L13: 0.3314 L23: -0.3855 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: -0.0689 S13: 0.0162 REMARK 3 S21: 0.2866 S22: -0.0976 S23: -0.2140 REMARK 3 S31: -0.0948 S32: 0.1224 S33: 0.0771 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND[111] REMARK 200 OPTICS : BE-LENSES/DIAMOND LAUE MONO REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38142 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.27900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1QAP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7 MG/ML IN 10 MM TRIS/HCL PH REMARK 280 8.3, 0.5 M NACL, 5 MM BME. CRYSTALLIZATION CONDITION: 0.2 M REMARK 280 MGCL2, 0.1 M BIS-TRIS, 25 % (W/V) PEG3350. MIXED 1:1 V/V., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 287K, PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.59750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.95400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.77550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.95400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.59750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.77550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 MET B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 VAL B -13 REMARK 465 ASP B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 LYS B 295 REMARK 465 SER B 296 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 167 CB CYS A 167 SG -0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 141 -64.77 -25.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 297 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 302 O REMARK 620 2 HOH B 374 O 88.2 REMARK 620 3 HOH B 381 O 89.3 86.1 REMARK 620 4 HOH B 401 O 175.8 91.4 94.8 REMARK 620 5 HOH B 437 O 90.2 174.5 88.6 90.5 REMARK 620 6 HOH B 438 O 81.4 98.7 169.4 94.5 86.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 297 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90669 RELATED DB: TARGETDB DBREF 3PAJ A 1 296 UNP Q9KPE6 Q9KPE6_VIBCH 1 296 DBREF 3PAJ B 1 296 UNP Q9KPE6 Q9KPE6_VIBCH 1 296 SEQADV 3PAJ MET A -23 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ HIS A -22 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ HIS A -21 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ HIS A -20 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ HIS A -19 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ HIS A -18 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ HIS A -17 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ SER A -16 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ SER A -15 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ GLY A -14 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ VAL A -13 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ ASP A -12 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ LEU A -11 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ GLY A -10 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ THR A -9 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ GLU A -8 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ ASN A -7 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ LEU A -6 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ TYR A -5 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ PHE A -4 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ GLN A -3 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ SER A -2 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ ASN A -1 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ ALA A 0 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ MET B -23 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ HIS B -22 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ HIS B -21 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ HIS B -20 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ HIS B -19 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ HIS B -18 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ HIS B -17 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ SER B -16 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ SER B -15 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ GLY B -14 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ VAL B -13 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ ASP B -12 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ LEU B -11 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ GLY B -10 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ THR B -9 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ GLU B -8 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ ASN B -7 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ LEU B -6 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ TYR B -5 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ PHE B -4 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ GLN B -3 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ SER B -2 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ ASN B -1 UNP Q9KPE6 EXPRESSION TAG SEQADV 3PAJ ALA B 0 UNP Q9KPE6 EXPRESSION TAG SEQRES 1 A 320 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 320 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET LYS SEQRES 3 A 320 GLU THR HIS ASN SER GLN ASP ARG LEU ALA TYR LEU LYS SEQRES 4 A 320 GLN GLN LEU PRO ALA ASP ILE THR ARG SER VAL ILE ASP SEQRES 5 A 320 THR LEU LYS GLU ASP LEU GLY GLY THR LEU ASP PRO ALA SEQRES 6 A 320 ALA ASP ILE THR ALA SER LEU ILE PRO ALA ASP ARG ILE SEQRES 7 A 320 SER THR ALA THR ILE ILE THR ARG GLU ALA GLY VAL PHE SEQRES 8 A 320 CYS GLY GLN LEU TRP ALA ASP GLU VAL PHE LYS GLN LEU SEQRES 9 A 320 GLY GLY GLN VAL SER ILE GLU TRP HIS VAL GLN ASP GLY SEQRES 10 A 320 ASP THR LEU THR PRO ASN GLN THR LEU CYS THR LEU THR SEQRES 11 A 320 GLY PRO ALA ARG ILE LEU LEU THR GLY GLU ARG ASN ALA SEQRES 12 A 320 MET ASN PHE ILE GLN THR LEU SER GLY CYS ALA THR ALA SEQRES 13 A 320 THR ALA ARG TYR VAL GLN GLU LEU LYS GLY THR GLN CYS SEQRES 14 A 320 ARG LEU LEU ASP THR ARG LYS THR ILE PRO GLY LEU ARG SEQRES 15 A 320 SER ALA LEU LYS TYR ALA VAL ALA CYS GLY GLY GLY TYR SEQRES 16 A 320 ASN HIS ARG ILE GLY VAL PHE ASP ALA TYR LEU ILE LYS SEQRES 17 A 320 GLU ASN HIS ILE ILE ALA CYS GLY GLY ILE ARG GLN ALA SEQRES 18 A 320 ILE SER THR ALA LYS GLN LEU ASN PRO GLY LYS PRO VAL SEQRES 19 A 320 GLU VAL GLU THR GLU THR LEU ALA GLU LEU GLU GLU ALA SEQRES 20 A 320 ILE SER ALA GLY ALA ASP ILE ILE MET LEU ASP ASN PHE SEQRES 21 A 320 SER LEU GLU MET MET ARG GLU ALA VAL LYS ILE ASN ALA SEQRES 22 A 320 GLY ARG ALA ALA LEU GLU ASN SER GLY ASN ILE THR LEU SEQRES 23 A 320 ASP ASN LEU LYS GLU CYS ALA GLU THR GLY VAL ASP TYR SEQRES 24 A 320 ILE SER VAL GLY ALA LEU THR LYS HIS LEU LYS ALA LEU SEQRES 25 A 320 ASP LEU SER MET ARG PHE LYS SER SEQRES 1 B 320 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 320 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET LYS SEQRES 3 B 320 GLU THR HIS ASN SER GLN ASP ARG LEU ALA TYR LEU LYS SEQRES 4 B 320 GLN GLN LEU PRO ALA ASP ILE THR ARG SER VAL ILE ASP SEQRES 5 B 320 THR LEU LYS GLU ASP LEU GLY GLY THR LEU ASP PRO ALA SEQRES 6 B 320 ALA ASP ILE THR ALA SER LEU ILE PRO ALA ASP ARG ILE SEQRES 7 B 320 SER THR ALA THR ILE ILE THR ARG GLU ALA GLY VAL PHE SEQRES 8 B 320 CYS GLY GLN LEU TRP ALA ASP GLU VAL PHE LYS GLN LEU SEQRES 9 B 320 GLY GLY GLN VAL SER ILE GLU TRP HIS VAL GLN ASP GLY SEQRES 10 B 320 ASP THR LEU THR PRO ASN GLN THR LEU CYS THR LEU THR SEQRES 11 B 320 GLY PRO ALA ARG ILE LEU LEU THR GLY GLU ARG ASN ALA SEQRES 12 B 320 MET ASN PHE ILE GLN THR LEU SER GLY CYS ALA THR ALA SEQRES 13 B 320 THR ALA ARG TYR VAL GLN GLU LEU LYS GLY THR GLN CYS SEQRES 14 B 320 ARG LEU LEU ASP THR ARG LYS THR ILE PRO GLY LEU ARG SEQRES 15 B 320 SER ALA LEU LYS TYR ALA VAL ALA CYS GLY GLY GLY TYR SEQRES 16 B 320 ASN HIS ARG ILE GLY VAL PHE ASP ALA TYR LEU ILE LYS SEQRES 17 B 320 GLU ASN HIS ILE ILE ALA CYS GLY GLY ILE ARG GLN ALA SEQRES 18 B 320 ILE SER THR ALA LYS GLN LEU ASN PRO GLY LYS PRO VAL SEQRES 19 B 320 GLU VAL GLU THR GLU THR LEU ALA GLU LEU GLU GLU ALA SEQRES 20 B 320 ILE SER ALA GLY ALA ASP ILE ILE MET LEU ASP ASN PHE SEQRES 21 B 320 SER LEU GLU MET MET ARG GLU ALA VAL LYS ILE ASN ALA SEQRES 22 B 320 GLY ARG ALA ALA LEU GLU ASN SER GLY ASN ILE THR LEU SEQRES 23 B 320 ASP ASN LEU LYS GLU CYS ALA GLU THR GLY VAL ASP TYR SEQRES 24 B 320 ILE SER VAL GLY ALA LEU THR LYS HIS LEU LYS ALA LEU SEQRES 25 B 320 ASP LEU SER MET ARG PHE LYS SER HET MG B 297 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *414(H2 O) HELIX 1 1 SER A -2 GLY A 35 1 38 HELIX 2 2 ASP A 39 ASP A 43 5 5 HELIX 3 3 THR A 45 ILE A 49 5 5 HELIX 4 4 GLY A 69 LEU A 80 1 12 HELIX 5 5 ALA A 109 LYS A 141 1 33 HELIX 6 6 LEU A 157 GLY A 168 1 12 HELIX 7 7 LYS A 184 GLY A 192 1 9 HELIX 8 8 GLY A 193 ASN A 205 1 13 HELIX 9 9 THR A 216 ALA A 226 1 11 HELIX 10 10 SER A 237 ALA A 249 1 13 HELIX 11 11 THR A 261 GLU A 270 1 10 HELIX 12 12 GLY A 279 HIS A 284 1 6 HELIX 13 13 SER B -2 GLY B 35 1 38 HELIX 14 14 ASP B 39 ASP B 43 5 5 HELIX 15 15 THR B 45 ILE B 49 5 5 HELIX 16 16 GLY B 69 LEU B 80 1 12 HELIX 17 17 ALA B 109 GLU B 139 1 31 HELIX 18 18 LEU B 157 GLY B 168 1 12 HELIX 19 19 LYS B 184 GLY B 192 1 9 HELIX 20 20 GLY B 193 ASN B 205 1 13 HELIX 21 21 THR B 216 ALA B 226 1 11 HELIX 22 22 SER B 237 ALA B 249 1 13 HELIX 23 23 ASN B 264 GLU B 270 1 7 HELIX 24 24 GLY B 279 HIS B 284 1 6 SHEET 1 A 4 SER A 85 TRP A 88 0 SHEET 2 A 4 THR A 101 PRO A 108 -1 O THR A 106 N SER A 85 SHEET 3 A 4 ILE A 54 THR A 61 -1 N ALA A 57 O LEU A 105 SHEET 4 A 4 LEU A 290 PHE A 294 -1 O SER A 291 N ILE A 60 SHEET 1 B 2 GLY A 65 VAL A 66 0 SHEET 2 B 2 THR A 95 LEU A 96 -1 O LEU A 96 N GLY A 65 SHEET 1 C 6 ARG A 146 LEU A 148 0 SHEET 2 C 6 TYR A 275 SER A 277 1 O ILE A 276 N LEU A 148 SHEET 3 C 6 ALA A 253 SER A 257 1 N ASN A 256 O SER A 277 SHEET 4 C 6 ILE A 230 ASP A 234 1 N LEU A 233 O GLU A 255 SHEET 5 C 6 VAL A 210 THR A 214 1 N THR A 214 O ASP A 234 SHEET 6 C 6 TYR A 181 ILE A 183 1 N ILE A 183 O GLU A 213 SHEET 1 D 4 SER B 85 TRP B 88 0 SHEET 2 D 4 THR B 101 PRO B 108 -1 O THR B 104 N GLU B 87 SHEET 3 D 4 ILE B 54 THR B 61 -1 N ALA B 57 O LEU B 105 SHEET 4 D 4 LEU B 290 ARG B 293 -1 O SER B 291 N ILE B 60 SHEET 1 E 2 GLY B 65 VAL B 66 0 SHEET 2 E 2 THR B 95 LEU B 96 -1 O LEU B 96 N GLY B 65 SHEET 1 F 6 ARG B 146 LEU B 148 0 SHEET 2 F 6 TYR B 275 SER B 277 1 O ILE B 276 N LEU B 148 SHEET 3 F 6 ALA B 253 SER B 257 1 N ASN B 256 O SER B 277 SHEET 4 F 6 ILE B 230 ASP B 234 1 N LEU B 233 O GLU B 255 SHEET 5 F 6 VAL B 210 THR B 214 1 N VAL B 212 O MET B 232 SHEET 6 F 6 TYR B 181 ILE B 183 1 N ILE B 183 O GLU B 213 LINK MG MG B 297 O HOH B 302 1555 1555 2.16 LINK MG MG B 297 O HOH B 374 1555 1555 2.21 LINK MG MG B 297 O HOH B 381 1555 1555 2.00 LINK MG MG B 297 O HOH B 401 1555 1555 2.06 LINK MG MG B 297 O HOH B 437 1555 1555 2.04 LINK MG MG B 297 O HOH B 438 1555 1555 2.06 SITE 1 AC1 6 HOH B 302 HOH B 374 HOH B 381 HOH B 401 SITE 2 AC1 6 HOH B 437 HOH B 438 CRYST1 59.195 79.551 117.908 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016893 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008481 0.00000