data_3PBF # _entry.id 3PBF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3PBF pdb_00003pbf 10.2210/pdb3pbf/pdb RCSB RCSB062187 ? ? WWPDB D_1000062187 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-11-03 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-08-01 4 'Structure model' 1 3 2023-09-06 5 'Structure model' 1 4 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site 9 5 'Structure model' pdbx_entry_details 10 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_ref_seq_dif.details' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PBF _pdbx_database_status.recvd_initial_deposition_date 2010-10-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1R13 'Surfactant Protein-A NCRD' unspecified PDB 1R14 'Surfactant Protein-A NCRD complexed with samarium' unspecified PDB 3PAK 'Surfactant Protein-A NCRD complexed with mannose' unspecified PDB 3PAQ 'Surfactant Protein-A NCRD complexed with alpha-methylmannose' unspecified PDB 3PAR 'Unliganded Surfactant Protein-A NCRD' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shang, F.' 1 'Rynkiewicz, M.J.' 2 'McCormack, F.X.' 3 'Wu, H.' 4 'Cafarella, T.M.' 5 'Head, J.' 6 'Seaton, B.A.' 7 # _citation.id primary _citation.title 'Crystallographic complexes of surfactant protein A and carbohydrates reveal ligand-induced conformational change.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 757 _citation.page_last 765 _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21047777 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.175265 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shang, F.' 1 ? primary 'Rynkiewicz, M.J.' 2 ? primary 'McCormack, F.X.' 3 ? primary 'Wu, H.' 4 ? primary 'Cafarella, T.M.' 5 ? primary 'Head, J.F.' 6 ? primary 'Seaton, B.A.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Pulmonary surfactant-associated protein A' 16672.580 1 ? N187S 'UNP residues 101-248' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 4 water nat water 18.015 157 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PSAP, PSP-A, SP-A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AYLDEELQTELYEIKHQILQTMGVLSLQGSMLSVGDKVFSTNGQSVNFDTIKEMCTRAGGNIAVPRTPEENEAIASIAKK YNNYVYLGMIEDQTPGDFHYLDGASVSYTNWYPGEPRGQGKEKCVEMYTDGTWNDRGCLQYRLAVCEF ; _entity_poly.pdbx_seq_one_letter_code_can ;AYLDEELQTELYEIKHQILQTMGVLSLQGSMLSVGDKVFSTNGQSVNFDTIKEMCTRAGGNIAVPRTPEENEAIASIAKK YNNYVYLGMIEDQTPGDFHYLDGASVSYTNWYPGEPRGQGKEKCVEMYTDGTWNDRGCLQYRLAVCEF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 TYR n 1 3 LEU n 1 4 ASP n 1 5 GLU n 1 6 GLU n 1 7 LEU n 1 8 GLN n 1 9 THR n 1 10 GLU n 1 11 LEU n 1 12 TYR n 1 13 GLU n 1 14 ILE n 1 15 LYS n 1 16 HIS n 1 17 GLN n 1 18 ILE n 1 19 LEU n 1 20 GLN n 1 21 THR n 1 22 MET n 1 23 GLY n 1 24 VAL n 1 25 LEU n 1 26 SER n 1 27 LEU n 1 28 GLN n 1 29 GLY n 1 30 SER n 1 31 MET n 1 32 LEU n 1 33 SER n 1 34 VAL n 1 35 GLY n 1 36 ASP n 1 37 LYS n 1 38 VAL n 1 39 PHE n 1 40 SER n 1 41 THR n 1 42 ASN n 1 43 GLY n 1 44 GLN n 1 45 SER n 1 46 VAL n 1 47 ASN n 1 48 PHE n 1 49 ASP n 1 50 THR n 1 51 ILE n 1 52 LYS n 1 53 GLU n 1 54 MET n 1 55 CYS n 1 56 THR n 1 57 ARG n 1 58 ALA n 1 59 GLY n 1 60 GLY n 1 61 ASN n 1 62 ILE n 1 63 ALA n 1 64 VAL n 1 65 PRO n 1 66 ARG n 1 67 THR n 1 68 PRO n 1 69 GLU n 1 70 GLU n 1 71 ASN n 1 72 GLU n 1 73 ALA n 1 74 ILE n 1 75 ALA n 1 76 SER n 1 77 ILE n 1 78 ALA n 1 79 LYS n 1 80 LYS n 1 81 TYR n 1 82 ASN n 1 83 ASN n 1 84 TYR n 1 85 VAL n 1 86 TYR n 1 87 LEU n 1 88 GLY n 1 89 MET n 1 90 ILE n 1 91 GLU n 1 92 ASP n 1 93 GLN n 1 94 THR n 1 95 PRO n 1 96 GLY n 1 97 ASP n 1 98 PHE n 1 99 HIS n 1 100 TYR n 1 101 LEU n 1 102 ASP n 1 103 GLY n 1 104 ALA n 1 105 SER n 1 106 VAL n 1 107 SER n 1 108 TYR n 1 109 THR n 1 110 ASN n 1 111 TRP n 1 112 TYR n 1 113 PRO n 1 114 GLY n 1 115 GLU n 1 116 PRO n 1 117 ARG n 1 118 GLY n 1 119 GLN n 1 120 GLY n 1 121 LYS n 1 122 GLU n 1 123 LYS n 1 124 CYS n 1 125 VAL n 1 126 GLU n 1 127 MET n 1 128 TYR n 1 129 THR n 1 130 ASP n 1 131 GLY n 1 132 THR n 1 133 TRP n 1 134 ASN n 1 135 ASP n 1 136 ARG n 1 137 GLY n 1 138 CYS n 1 139 LEU n 1 140 GLN n 1 141 TYR n 1 142 ARG n 1 143 LEU n 1 144 ALA n 1 145 VAL n 1 146 CYS n 1 147 GLU n 1 148 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'brown rat,rat,rats' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Sftp-1, Sftp1, Sftpa, Sftpa1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name TRICHOPLUSIA _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7110 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PVL 1392' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 81 ? ? ? A . n A 1 2 TYR 2 82 ? ? ? A . n A 1 3 LEU 3 83 ? ? ? A . n A 1 4 ASP 4 84 84 ASP ASP A . n A 1 5 GLU 5 85 85 GLU GLU A . n A 1 6 GLU 6 86 86 GLU GLU A . n A 1 7 LEU 7 87 87 LEU LEU A . n A 1 8 GLN 8 88 88 GLN GLN A . n A 1 9 THR 9 89 89 THR THR A . n A 1 10 GLU 10 90 90 GLU GLU A . n A 1 11 LEU 11 91 91 LEU LEU A . n A 1 12 TYR 12 92 92 TYR TYR A . n A 1 13 GLU 13 93 93 GLU GLU A . n A 1 14 ILE 14 94 94 ILE ILE A . n A 1 15 LYS 15 95 95 LYS LYS A . n A 1 16 HIS 16 96 96 HIS HIS A . n A 1 17 GLN 17 97 97 GLN GLN A . n A 1 18 ILE 18 98 98 ILE ILE A . n A 1 19 LEU 19 99 99 LEU LEU A . n A 1 20 GLN 20 100 100 GLN GLN A . n A 1 21 THR 21 101 101 THR THR A . n A 1 22 MET 22 102 102 MET MET A . n A 1 23 GLY 23 103 103 GLY GLY A . n A 1 24 VAL 24 104 104 VAL VAL A . n A 1 25 LEU 25 105 105 LEU LEU A . n A 1 26 SER 26 106 106 SER SER A . n A 1 27 LEU 27 107 107 LEU LEU A . n A 1 28 GLN 28 108 108 GLN GLN A . n A 1 29 GLY 29 109 109 GLY GLY A . n A 1 30 SER 30 110 110 SER SER A . n A 1 31 MET 31 111 111 MET MET A . n A 1 32 LEU 32 112 112 LEU LEU A . n A 1 33 SER 33 113 113 SER SER A . n A 1 34 VAL 34 114 114 VAL VAL A . n A 1 35 GLY 35 115 115 GLY GLY A . n A 1 36 ASP 36 116 116 ASP ASP A . n A 1 37 LYS 37 117 117 LYS LYS A . n A 1 38 VAL 38 118 118 VAL VAL A . n A 1 39 PHE 39 119 119 PHE PHE A . n A 1 40 SER 40 120 120 SER SER A . n A 1 41 THR 41 121 121 THR THR A . n A 1 42 ASN 42 122 122 ASN ASN A . n A 1 43 GLY 43 123 123 GLY GLY A . n A 1 44 GLN 44 124 124 GLN GLN A . n A 1 45 SER 45 125 125 SER SER A . n A 1 46 VAL 46 126 126 VAL VAL A . n A 1 47 ASN 47 127 127 ASN ASN A . n A 1 48 PHE 48 128 128 PHE PHE A . n A 1 49 ASP 49 129 129 ASP ASP A . n A 1 50 THR 50 130 130 THR THR A . n A 1 51 ILE 51 131 131 ILE ILE A . n A 1 52 LYS 52 132 132 LYS LYS A . n A 1 53 GLU 53 133 133 GLU GLU A . n A 1 54 MET 54 134 134 MET MET A . n A 1 55 CYS 55 135 135 CYS CYS A . n A 1 56 THR 56 136 136 THR THR A . n A 1 57 ARG 57 137 137 ARG ARG A . n A 1 58 ALA 58 138 138 ALA ALA A . n A 1 59 GLY 59 139 139 GLY GLY A . n A 1 60 GLY 60 140 140 GLY GLY A . n A 1 61 ASN 61 141 141 ASN ASN A . n A 1 62 ILE 62 142 142 ILE ILE A . n A 1 63 ALA 63 143 143 ALA ALA A . n A 1 64 VAL 64 144 144 VAL VAL A . n A 1 65 PRO 65 145 145 PRO PRO A . n A 1 66 ARG 66 146 146 ARG ARG A . n A 1 67 THR 67 147 147 THR THR A . n A 1 68 PRO 68 148 148 PRO PRO A . n A 1 69 GLU 69 149 149 GLU GLU A . n A 1 70 GLU 70 150 150 GLU GLU A . n A 1 71 ASN 71 151 151 ASN ASN A . n A 1 72 GLU 72 152 152 GLU GLU A . n A 1 73 ALA 73 153 153 ALA ALA A . n A 1 74 ILE 74 154 154 ILE ILE A . n A 1 75 ALA 75 155 155 ALA ALA A . n A 1 76 SER 76 156 156 SER SER A . n A 1 77 ILE 77 157 157 ILE ILE A . n A 1 78 ALA 78 158 158 ALA ALA A . n A 1 79 LYS 79 159 159 LYS LYS A . n A 1 80 LYS 80 160 160 LYS LYS A . n A 1 81 TYR 81 161 161 TYR TYR A . n A 1 82 ASN 82 162 162 ASN ASN A . n A 1 83 ASN 83 163 163 ASN ASN A . n A 1 84 TYR 84 164 164 TYR TYR A . n A 1 85 VAL 85 165 165 VAL VAL A . n A 1 86 TYR 86 166 166 TYR TYR A . n A 1 87 LEU 87 167 167 LEU LEU A . n A 1 88 GLY 88 168 168 GLY GLY A . n A 1 89 MET 89 169 169 MET MET A . n A 1 90 ILE 90 170 170 ILE ILE A . n A 1 91 GLU 91 171 171 GLU GLU A . n A 1 92 ASP 92 172 172 ASP ASP A . n A 1 93 GLN 93 173 173 GLN GLN A . n A 1 94 THR 94 174 174 THR THR A . n A 1 95 PRO 95 175 175 PRO PRO A . n A 1 96 GLY 96 176 176 GLY GLY A . n A 1 97 ASP 97 177 177 ASP ASP A . n A 1 98 PHE 98 178 178 PHE PHE A . n A 1 99 HIS 99 179 179 HIS HIS A . n A 1 100 TYR 100 180 180 TYR TYR A . n A 1 101 LEU 101 181 181 LEU LEU A . n A 1 102 ASP 102 182 182 ASP ASP A . n A 1 103 GLY 103 183 183 GLY GLY A . n A 1 104 ALA 104 184 184 ALA ALA A . n A 1 105 SER 105 185 185 SER SER A . n A 1 106 VAL 106 186 186 VAL VAL A . n A 1 107 SER 107 187 187 SER SER A . n A 1 108 TYR 108 188 188 TYR TYR A . n A 1 109 THR 109 189 189 THR THR A . n A 1 110 ASN 110 190 190 ASN ASN A . n A 1 111 TRP 111 191 191 TRP TRP A . n A 1 112 TYR 112 192 192 TYR TYR A . n A 1 113 PRO 113 193 193 PRO PRO A . n A 1 114 GLY 114 194 194 GLY GLY A . n A 1 115 GLU 115 195 195 GLU GLU A . n A 1 116 PRO 116 196 196 PRO PRO A . n A 1 117 ARG 117 197 197 ARG ARG A . n A 1 118 GLY 118 198 198 GLY GLY A . n A 1 119 GLN 119 199 199 GLN GLN A . n A 1 120 GLY 120 200 200 GLY GLY A . n A 1 121 LYS 121 201 201 LYS LYS A . n A 1 122 GLU 122 202 202 GLU GLU A . n A 1 123 LYS 123 203 203 LYS LYS A . n A 1 124 CYS 124 204 204 CYS CYS A . n A 1 125 VAL 125 205 205 VAL VAL A . n A 1 126 GLU 126 206 206 GLU GLU A . n A 1 127 MET 127 207 207 MET MET A . n A 1 128 TYR 128 208 208 TYR TYR A . n A 1 129 THR 129 209 209 THR THR A . n A 1 130 ASP 130 210 210 ASP ASP A . n A 1 131 GLY 131 211 211 GLY GLY A . n A 1 132 THR 132 212 212 THR THR A . n A 1 133 TRP 133 213 213 TRP TRP A . n A 1 134 ASN 134 214 214 ASN ASN A . n A 1 135 ASP 135 215 215 ASP ASP A . n A 1 136 ARG 136 216 216 ARG ARG A . n A 1 137 GLY 137 217 217 GLY GLY A . n A 1 138 CYS 138 218 218 CYS CYS A . n A 1 139 LEU 139 219 219 LEU LEU A . n A 1 140 GLN 140 220 220 GLN GLN A . n A 1 141 TYR 141 221 221 TYR TYR A . n A 1 142 ARG 142 222 222 ARG ARG A . n A 1 143 LEU 143 223 223 LEU LEU A . n A 1 144 ALA 144 224 224 ALA ALA A . n A 1 145 VAL 145 225 225 VAL VAL A . n A 1 146 CYS 146 226 226 CYS CYS A . n A 1 147 GLU 147 227 227 GLU GLU A . n A 1 148 PHE 148 228 228 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 300 300 CA CA A . C 3 GOL 1 410 410 GOL GOL A . D 3 GOL 1 411 411 GOL GOL A . E 3 GOL 1 412 412 GOL GOL A . F 4 HOH 1 413 413 HOH HOH A . F 4 HOH 2 414 414 HOH HOH A . F 4 HOH 3 415 415 HOH HOH A . F 4 HOH 4 416 416 HOH HOH A . F 4 HOH 5 417 417 HOH HOH A . F 4 HOH 6 418 418 HOH HOH A . F 4 HOH 7 419 419 HOH HOH A . F 4 HOH 8 420 420 HOH HOH A . F 4 HOH 9 421 421 HOH HOH A . F 4 HOH 10 422 422 HOH HOH A . F 4 HOH 11 423 423 HOH HOH A . F 4 HOH 12 424 424 HOH HOH A . F 4 HOH 13 425 425 HOH HOH A . F 4 HOH 14 426 426 HOH HOH A . F 4 HOH 15 427 427 HOH HOH A . F 4 HOH 16 428 428 HOH HOH A . F 4 HOH 17 429 429 HOH HOH A . F 4 HOH 18 430 430 HOH HOH A . F 4 HOH 19 431 431 HOH HOH A . F 4 HOH 20 432 432 HOH HOH A . F 4 HOH 21 433 433 HOH HOH A . F 4 HOH 22 434 434 HOH HOH A . F 4 HOH 23 435 435 HOH HOH A . F 4 HOH 24 436 436 HOH HOH A . F 4 HOH 25 437 437 HOH HOH A . F 4 HOH 26 438 438 HOH HOH A . F 4 HOH 27 439 439 HOH HOH A . F 4 HOH 28 440 440 HOH HOH A . F 4 HOH 29 441 441 HOH HOH A . F 4 HOH 30 442 442 HOH HOH A . F 4 HOH 31 443 443 HOH HOH A . F 4 HOH 32 444 444 HOH HOH A . F 4 HOH 33 445 445 HOH HOH A . F 4 HOH 34 446 446 HOH HOH A . F 4 HOH 35 447 447 HOH HOH A . F 4 HOH 36 448 448 HOH HOH A . F 4 HOH 37 449 449 HOH HOH A . F 4 HOH 38 450 450 HOH HOH A . F 4 HOH 39 451 451 HOH HOH A . F 4 HOH 40 452 452 HOH HOH A . F 4 HOH 41 453 453 HOH HOH A . F 4 HOH 42 454 454 HOH HOH A . F 4 HOH 43 455 455 HOH HOH A . F 4 HOH 44 456 456 HOH HOH A . F 4 HOH 45 457 457 HOH HOH A . F 4 HOH 46 458 458 HOH HOH A . F 4 HOH 47 459 459 HOH HOH A . F 4 HOH 48 460 460 HOH HOH A . F 4 HOH 49 461 461 HOH HOH A . F 4 HOH 50 462 462 HOH HOH A . F 4 HOH 51 463 463 HOH HOH A . F 4 HOH 52 464 464 HOH HOH A . F 4 HOH 53 465 465 HOH HOH A . F 4 HOH 54 466 466 HOH HOH A . F 4 HOH 55 467 467 HOH HOH A . F 4 HOH 56 468 468 HOH HOH A . F 4 HOH 57 469 469 HOH HOH A . F 4 HOH 58 470 470 HOH HOH A . F 4 HOH 59 471 471 HOH HOH A . F 4 HOH 60 472 472 HOH HOH A . F 4 HOH 61 473 473 HOH HOH A . F 4 HOH 62 474 474 HOH HOH A . F 4 HOH 63 475 475 HOH HOH A . F 4 HOH 64 476 476 HOH HOH A . F 4 HOH 65 477 477 HOH HOH A . F 4 HOH 66 478 478 HOH HOH A . F 4 HOH 67 479 479 HOH HOH A . F 4 HOH 68 480 480 HOH HOH A . F 4 HOH 69 481 481 HOH HOH A . F 4 HOH 70 482 482 HOH HOH A . F 4 HOH 71 483 483 HOH HOH A . F 4 HOH 72 484 484 HOH HOH A . F 4 HOH 73 485 485 HOH HOH A . F 4 HOH 74 486 486 HOH HOH A . F 4 HOH 75 487 487 HOH HOH A . F 4 HOH 76 488 488 HOH HOH A . F 4 HOH 77 489 489 HOH HOH A . F 4 HOH 78 490 490 HOH HOH A . F 4 HOH 79 491 491 HOH HOH A . F 4 HOH 80 492 492 HOH HOH A . F 4 HOH 81 493 493 HOH HOH A . F 4 HOH 82 494 494 HOH HOH A . F 4 HOH 83 495 495 HOH HOH A . F 4 HOH 84 496 496 HOH HOH A . F 4 HOH 85 497 497 HOH HOH A . F 4 HOH 86 498 498 HOH HOH A . F 4 HOH 87 499 499 HOH HOH A . F 4 HOH 88 500 500 HOH HOH A . F 4 HOH 89 501 501 HOH HOH A . F 4 HOH 90 502 502 HOH HOH A . F 4 HOH 91 503 503 HOH HOH A . F 4 HOH 92 504 504 HOH HOH A . F 4 HOH 93 505 505 HOH HOH A . F 4 HOH 94 506 506 HOH HOH A . F 4 HOH 95 507 507 HOH HOH A . F 4 HOH 96 508 508 HOH HOH A . F 4 HOH 97 509 509 HOH HOH A . F 4 HOH 98 510 510 HOH HOH A . F 4 HOH 99 511 511 HOH HOH A . F 4 HOH 100 512 512 HOH HOH A . F 4 HOH 101 513 513 HOH HOH A . F 4 HOH 102 514 514 HOH HOH A . F 4 HOH 103 515 515 HOH HOH A . F 4 HOH 104 516 516 HOH HOH A . F 4 HOH 105 517 517 HOH HOH A . F 4 HOH 106 518 518 HOH HOH A . F 4 HOH 107 519 519 HOH HOH A . F 4 HOH 108 520 520 HOH HOH A . F 4 HOH 109 521 521 HOH HOH A . F 4 HOH 110 522 522 HOH HOH A . F 4 HOH 111 523 523 HOH HOH A . F 4 HOH 112 524 524 HOH HOH A . F 4 HOH 113 525 525 HOH HOH A . F 4 HOH 114 526 526 HOH HOH A . F 4 HOH 115 527 527 HOH HOH A . F 4 HOH 116 528 528 HOH HOH A . F 4 HOH 117 529 529 HOH HOH A . F 4 HOH 118 530 530 HOH HOH A . F 4 HOH 119 531 531 HOH HOH A . F 4 HOH 120 532 532 HOH HOH A . F 4 HOH 121 533 533 HOH HOH A . F 4 HOH 122 534 534 HOH HOH A . F 4 HOH 123 535 535 HOH HOH A . F 4 HOH 124 536 536 HOH HOH A . F 4 HOH 125 537 537 HOH HOH A . F 4 HOH 126 538 538 HOH HOH A . F 4 HOH 127 539 539 HOH HOH A . F 4 HOH 128 540 540 HOH HOH A . F 4 HOH 129 541 541 HOH HOH A . F 4 HOH 130 542 542 HOH HOH A . F 4 HOH 131 543 543 HOH HOH A . F 4 HOH 132 544 544 HOH HOH A . F 4 HOH 133 545 545 HOH HOH A . F 4 HOH 134 546 546 HOH HOH A . F 4 HOH 135 547 547 HOH HOH A . F 4 HOH 136 548 548 HOH HOH A . F 4 HOH 137 549 549 HOH HOH A . F 4 HOH 138 550 550 HOH HOH A . F 4 HOH 139 551 551 HOH HOH A . F 4 HOH 140 552 552 HOH HOH A . F 4 HOH 141 553 553 HOH HOH A . F 4 HOH 142 554 554 HOH HOH A . F 4 HOH 143 555 555 HOH HOH A . F 4 HOH 144 556 556 HOH HOH A . F 4 HOH 145 557 557 HOH HOH A . F 4 HOH 146 558 558 HOH HOH A . F 4 HOH 147 559 559 HOH HOH A . F 4 HOH 148 560 560 HOH HOH A . F 4 HOH 149 561 561 HOH HOH A . F 4 HOH 150 562 562 HOH HOH A . F 4 HOH 151 563 563 HOH HOH A . F 4 HOH 152 564 564 HOH HOH A . F 4 HOH 153 565 565 HOH HOH A . F 4 HOH 154 566 566 HOH HOH A . F 4 HOH 155 567 567 HOH HOH A . F 4 HOH 156 568 568 HOH HOH A . F 4 HOH 157 569 569 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 3PBF _cell.length_a 97.376 _cell.length_b 97.376 _cell.length_c 44.905 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PBF _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3PBF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.69 _exptl_crystal.density_percent_sol 66.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;1ul SP-A (10 mg/ml) was mixed with 1ul reservoir (50 mM sodium cacodylate (pH = 6.5), 1.2-1.6 M lithium sulfate, 10 mM calcium chloride, and 5 % v/v glycerol. Prior to data collection, crystals were cryoprotected in a solution with higher amounts of glycerol., VAPOR DIFFUSION, HANGING DROP, temperature 290K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4r' _diffrn_detector.pdbx_collection_date 2002-08-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X8C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X8C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 3PBF _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25 _reflns.d_resolution_high 1.8 _reflns.number_obs 22680 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_netI_over_sigmaI 14.8 _reflns.B_iso_Wilson_estimate 18.0 _reflns.pdbx_redundancy 5.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 98.2 _reflns_shell.Rmerge_I_obs 0.229 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.6 _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2206 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3PBF _refine.ls_number_reflns_obs 22095 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 545437.94 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.39 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 97.1 _refine.ls_R_factor_obs 0.207 _refine.ls_R_factor_R_work 0.207 _refine.ls_R_factor_R_free 0.223 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 2187 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 27.9 _refine.aniso_B[1][1] 0.92 _refine.aniso_B[2][2] 0.92 _refine.aniso_B[3][3] -1.84 _refine.aniso_B[1][2] 0.35 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.376265 _refine.solvent_model_param_bsol 57.3681 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB CODE 1R13' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_all ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3PBF _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.15 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.23 _refine_analyze.Luzzati_sigma_a_free 0.17 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1143 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 157 _refine_hist.number_atoms_total 1319 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 23.39 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.72 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id 1 _refine_ls_restr_ncs.ncs_model_details NONE _refine_ls_restr_ncs.rms_dev_position ? _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_type . _refine_ls_restr_ncs.pdbx_auth_asym_id . _refine_ls_restr_ncs.pdbx_ens_id 1 _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_asym_id ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 3045 _refine_ls_shell.R_factor_R_work 0.252 _refine_ls_shell.percent_reflns_obs 90.4 _refine_ls_shell.R_factor_R_free 0.278 _refine_ls_shell.R_factor_R_free_error 0.015 _refine_ls_shell.percent_reflns_R_free 10.3 _refine_ls_shell.number_reflns_R_free 348 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 carbohydrate.param carbohydrate.top 'X-RAY DIFFRACTION' 3 water.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 glycerol.param ? 'X-RAY DIFFRACTION' # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _database_PDB_matrix.entry_id 3PBF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3PBF _struct.title 'Surfactant Protein-A neck and carbohydrate recognition domain (NCRD) complexed with glycerol' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PBF _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'collectin, carbohydrate binding, lectin, mannose, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SFTPA_RAT _struct_ref.pdbx_db_accession P08427 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AYLDEELQTELYEIKHQILQTMGVLSLQGSMLSVGDKVFSTNGQSVNFDTIKEMCTRAGGNIAVPRTPEENEAIASIAKK YNNYVYLGMIEDQTPGDFHYLDGASVNYTNWYPGEPRGQGKEKCVEMYTDGTWNDRGCLQYRLAVCEF ; _struct_ref.pdbx_align_begin 101 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3PBF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 148 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P08427 _struct_ref_seq.db_align_beg 101 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 248 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 81 _struct_ref_seq.pdbx_auth_seq_align_end 228 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3PBF _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 107 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P08427 _struct_ref_seq_dif.db_mon_id ASN _struct_ref_seq_dif.pdbx_seq_db_seq_num 207 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 187 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7330 ? 1 MORE -75 ? 1 'SSA (A^2)' 20870 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 97.3760000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 48.6880000000 -0.8660254038 -0.5000000000 0.0000000000 84.3300897189 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 4 ? GLN A 28 ? ASP A 84 GLN A 108 1 ? 25 HELX_P HELX_P2 2 ASN A 47 ? ALA A 58 ? ASN A 127 ALA A 138 1 ? 12 HELX_P HELX_P3 3 THR A 67 ? ASN A 82 ? THR A 147 ASN A 162 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 55 SG ? ? ? 1_555 A CYS 146 SG ? ? A CYS 135 A CYS 226 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 124 SG ? ? ? 1_555 A CYS 138 SG ? ? A CYS 204 A CYS 218 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc1 metalc ? ? A GLU 115 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 195 A CA 300 1_555 ? ? ? ? ? ? ? 2.637 ? ? metalc2 metalc ? ? A GLU 122 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 202 A CA 300 1_555 ? ? ? ? ? ? ? 2.881 ? ? metalc3 metalc ? ? A ASN 134 OD1 ? ? ? 1_555 B CA . CA ? ? A ASN 214 A CA 300 1_555 ? ? ? ? ? ? ? 2.551 ? ? metalc4 metalc ? ? A ASP 135 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 215 A CA 300 1_555 ? ? ? ? ? ? ? 2.540 ? ? metalc5 metalc ? ? A ASP 135 O ? ? ? 1_555 B CA . CA ? ? A ASP 215 A CA 300 1_555 ? ? ? ? ? ? ? 2.546 ? ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 E GOL . O2 ? ? A CA 300 A GOL 412 1_555 ? ? ? ? ? ? ? 2.749 ? ? metalc7 metalc ? ? B CA . CA ? ? ? 1_555 E GOL . O1 ? ? A CA 300 A GOL 412 1_555 ? ? ? ? ? ? ? 2.819 ? ? metalc8 metalc ? ? B CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 300 A HOH 518 1_555 ? ? ? ? ? ? ? 2.833 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 115 ? A GLU 195 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 OE1 ? A GLU 122 ? A GLU 202 ? 1_555 146.3 ? 2 OE1 ? A GLU 115 ? A GLU 195 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 OD1 ? A ASN 134 ? A ASN 214 ? 1_555 69.3 ? 3 OE1 ? A GLU 122 ? A GLU 202 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 OD1 ? A ASN 134 ? A ASN 214 ? 1_555 143.8 ? 4 OE1 ? A GLU 115 ? A GLU 195 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 OD1 ? A ASP 135 ? A ASP 215 ? 1_555 68.0 ? 5 OE1 ? A GLU 122 ? A GLU 202 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 OD1 ? A ASP 135 ? A ASP 215 ? 1_555 92.8 ? 6 OD1 ? A ASN 134 ? A ASN 214 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 OD1 ? A ASP 135 ? A ASP 215 ? 1_555 100.6 ? 7 OE1 ? A GLU 115 ? A GLU 195 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? A ASP 135 ? A ASP 215 ? 1_555 128.1 ? 8 OE1 ? A GLU 122 ? A GLU 202 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? A ASP 135 ? A ASP 215 ? 1_555 69.6 ? 9 OD1 ? A ASN 134 ? A ASN 214 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? A ASP 135 ? A ASP 215 ? 1_555 80.6 ? 10 OD1 ? A ASP 135 ? A ASP 215 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? A ASP 135 ? A ASP 215 ? 1_555 77.7 ? 11 OE1 ? A GLU 115 ? A GLU 195 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O2 ? E GOL . ? A GOL 412 ? 1_555 134.9 ? 12 OE1 ? A GLU 122 ? A GLU 202 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O2 ? E GOL . ? A GOL 412 ? 1_555 72.1 ? 13 OD1 ? A ASN 134 ? A ASN 214 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O2 ? E GOL . ? A GOL 412 ? 1_555 82.0 ? 14 OD1 ? A ASP 135 ? A ASP 215 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O2 ? E GOL . ? A GOL 412 ? 1_555 154.2 ? 15 O ? A ASP 135 ? A ASP 215 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O2 ? E GOL . ? A GOL 412 ? 1_555 77.4 ? 16 OE1 ? A GLU 115 ? A GLU 195 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O1 ? E GOL . ? A GOL 412 ? 1_555 77.1 ? 17 OE1 ? A GLU 122 ? A GLU 202 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O1 ? E GOL . ? A GOL 412 ? 1_555 111.0 ? 18 OD1 ? A ASN 134 ? A ASN 214 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O1 ? E GOL . ? A GOL 412 ? 1_555 76.8 ? 19 OD1 ? A ASP 135 ? A ASP 215 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O1 ? E GOL . ? A GOL 412 ? 1_555 143.2 ? 20 O ? A ASP 135 ? A ASP 215 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O1 ? E GOL . ? A GOL 412 ? 1_555 136.1 ? 21 O2 ? E GOL . ? A GOL 412 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O1 ? E GOL . ? A GOL 412 ? 1_555 62.6 ? 22 OE1 ? A GLU 115 ? A GLU 195 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 518 ? 1_555 92.2 ? 23 OE1 ? A GLU 122 ? A GLU 202 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 518 ? 1_555 63.3 ? 24 OD1 ? A ASN 134 ? A ASN 214 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 518 ? 1_555 143.8 ? 25 OD1 ? A ASP 135 ? A ASP 215 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 518 ? 1_555 100.6 ? 26 O ? A ASP 135 ? A ASP 215 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 518 ? 1_555 132.7 ? 27 O2 ? E GOL . ? A GOL 412 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 518 ? 1_555 91.3 ? 28 O1 ? E GOL . ? A GOL 412 ? 1_555 CA ? B CA . ? A CA 300 ? 1_555 O ? F HOH . ? A HOH 518 ? 1_555 68.6 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 55 ? CYS A 146 ? CYS A 135 ? 1_555 CYS A 226 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 124 ? CYS A 138 ? CYS A 204 ? 1_555 CYS A 218 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 115 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 195 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 116 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 196 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.28 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 32 ? VAL A 34 ? LEU A 112 VAL A 114 A 2 LYS A 37 ? VAL A 46 ? LYS A 117 VAL A 126 A 3 ARG A 142 ? PHE A 148 ? ARG A 222 PHE A 228 A 4 ASN A 61 ? ILE A 62 ? ASN A 141 ILE A 142 B 1 PHE A 98 ? TYR A 100 ? PHE A 178 TYR A 180 B 2 VAL A 85 ? GLU A 91 ? VAL A 165 GLU A 171 B 3 CYS A 124 ? MET A 127 ? CYS A 204 MET A 207 B 4 TRP A 133 ? ARG A 136 ? TRP A 213 ARG A 216 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 34 ? N VAL A 114 O LYS A 37 ? O LYS A 117 A 2 3 N SER A 40 ? N SER A 120 O CYS A 146 ? O CYS A 226 A 3 4 O GLU A 147 ? O GLU A 227 N ASN A 61 ? N ASN A 141 B 1 2 O HIS A 99 ? O HIS A 179 N ILE A 90 ? N ILE A 170 B 2 3 N LEU A 87 ? N LEU A 167 O VAL A 125 ? O VAL A 205 B 3 4 N GLU A 126 ? N GLU A 206 O ASN A 134 ? O ASN A 214 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 300 ? 6 'BINDING SITE FOR RESIDUE CA A 300' AC2 Software A GOL 410 ? 10 'BINDING SITE FOR RESIDUE GOL A 410' AC3 Software A GOL 411 ? 5 'BINDING SITE FOR RESIDUE GOL A 411' AC4 Software A GOL 412 ? 7 'BINDING SITE FOR RESIDUE GOL A 412' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 115 ? GLU A 195 . ? 1_555 ? 2 AC1 6 GLU A 122 ? GLU A 202 . ? 1_555 ? 3 AC1 6 ASN A 134 ? ASN A 214 . ? 1_555 ? 4 AC1 6 ASP A 135 ? ASP A 215 . ? 1_555 ? 5 AC1 6 GOL E . ? GOL A 412 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 518 . ? 1_555 ? 7 AC2 10 GLY A 29 ? GLY A 109 . ? 1_555 ? 8 AC2 10 SER A 30 ? SER A 110 . ? 1_555 ? 9 AC2 10 MET A 31 ? MET A 111 . ? 1_555 ? 10 AC2 10 LEU A 32 ? LEU A 112 . ? 1_555 ? 11 AC2 10 SER A 40 ? SER A 120 . ? 1_555 ? 12 AC2 10 THR A 41 ? THR A 121 . ? 1_555 ? 13 AC2 10 LYS A 80 ? LYS A 160 . ? 1_555 ? 14 AC2 10 HOH F . ? HOH A 454 . ? 1_555 ? 15 AC2 10 HOH F . ? HOH A 478 . ? 1_555 ? 16 AC2 10 HOH F . ? HOH A 479 . ? 1_555 ? 17 AC3 5 PRO A 116 ? PRO A 196 . ? 1_555 ? 18 AC3 5 ARG A 117 ? ARG A 197 . ? 1_555 ? 19 AC3 5 GLY A 118 ? GLY A 198 . ? 1_555 ? 20 AC3 5 GLN A 119 ? GLN A 199 . ? 1_555 ? 21 AC3 5 HOH F . ? HOH A 437 . ? 1_555 ? 22 AC4 7 GLU A 115 ? GLU A 195 . ? 1_555 ? 23 AC4 7 ARG A 117 ? ARG A 197 . ? 1_555 ? 24 AC4 7 GLU A 122 ? GLU A 202 . ? 1_555 ? 25 AC4 7 ASN A 134 ? ASN A 214 . ? 1_555 ? 26 AC4 7 ASP A 135 ? ASP A 215 . ? 1_555 ? 27 AC4 7 ARG A 136 ? ARG A 216 . ? 1_555 ? 28 AC4 7 CA B . ? CA A 300 . ? 1_555 ? # _pdbx_entry_details.entry_id 3PBF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 116 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 413 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 187 ? ? -104.51 -77.89 2 1 ASN A 190 ? ? -149.76 53.74 3 1 ARG A 197 ? ? -148.11 36.87 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 81 ? A ALA 1 2 1 Y 1 A TYR 82 ? A TYR 2 3 1 Y 1 A LEU 83 ? A LEU 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 GOL C1 C N N 138 GOL O1 O N N 139 GOL C2 C N N 140 GOL O2 O N N 141 GOL C3 C N N 142 GOL O3 O N N 143 GOL H11 H N N 144 GOL H12 H N N 145 GOL HO1 H N N 146 GOL H2 H N N 147 GOL HO2 H N N 148 GOL H31 H N N 149 GOL H32 H N N 150 GOL HO3 H N N 151 HIS N N N N 152 HIS CA C N S 153 HIS C C N N 154 HIS O O N N 155 HIS CB C N N 156 HIS CG C Y N 157 HIS ND1 N Y N 158 HIS CD2 C Y N 159 HIS CE1 C Y N 160 HIS NE2 N Y N 161 HIS OXT O N N 162 HIS H H N N 163 HIS H2 H N N 164 HIS HA H N N 165 HIS HB2 H N N 166 HIS HB3 H N N 167 HIS HD1 H N N 168 HIS HD2 H N N 169 HIS HE1 H N N 170 HIS HE2 H N N 171 HIS HXT H N N 172 HOH O O N N 173 HOH H1 H N N 174 HOH H2 H N N 175 ILE N N N N 176 ILE CA C N S 177 ILE C C N N 178 ILE O O N N 179 ILE CB C N S 180 ILE CG1 C N N 181 ILE CG2 C N N 182 ILE CD1 C N N 183 ILE OXT O N N 184 ILE H H N N 185 ILE H2 H N N 186 ILE HA H N N 187 ILE HB H N N 188 ILE HG12 H N N 189 ILE HG13 H N N 190 ILE HG21 H N N 191 ILE HG22 H N N 192 ILE HG23 H N N 193 ILE HD11 H N N 194 ILE HD12 H N N 195 ILE HD13 H N N 196 ILE HXT H N N 197 LEU N N N N 198 LEU CA C N S 199 LEU C C N N 200 LEU O O N N 201 LEU CB C N N 202 LEU CG C N N 203 LEU CD1 C N N 204 LEU CD2 C N N 205 LEU OXT O N N 206 LEU H H N N 207 LEU H2 H N N 208 LEU HA H N N 209 LEU HB2 H N N 210 LEU HB3 H N N 211 LEU HG H N N 212 LEU HD11 H N N 213 LEU HD12 H N N 214 LEU HD13 H N N 215 LEU HD21 H N N 216 LEU HD22 H N N 217 LEU HD23 H N N 218 LEU HXT H N N 219 LYS N N N N 220 LYS CA C N S 221 LYS C C N N 222 LYS O O N N 223 LYS CB C N N 224 LYS CG C N N 225 LYS CD C N N 226 LYS CE C N N 227 LYS NZ N N N 228 LYS OXT O N N 229 LYS H H N N 230 LYS H2 H N N 231 LYS HA H N N 232 LYS HB2 H N N 233 LYS HB3 H N N 234 LYS HG2 H N N 235 LYS HG3 H N N 236 LYS HD2 H N N 237 LYS HD3 H N N 238 LYS HE2 H N N 239 LYS HE3 H N N 240 LYS HZ1 H N N 241 LYS HZ2 H N N 242 LYS HZ3 H N N 243 LYS HXT H N N 244 MET N N N N 245 MET CA C N S 246 MET C C N N 247 MET O O N N 248 MET CB C N N 249 MET CG C N N 250 MET SD S N N 251 MET CE C N N 252 MET OXT O N N 253 MET H H N N 254 MET H2 H N N 255 MET HA H N N 256 MET HB2 H N N 257 MET HB3 H N N 258 MET HG2 H N N 259 MET HG3 H N N 260 MET HE1 H N N 261 MET HE2 H N N 262 MET HE3 H N N 263 MET HXT H N N 264 PHE N N N N 265 PHE CA C N S 266 PHE C C N N 267 PHE O O N N 268 PHE CB C N N 269 PHE CG C Y N 270 PHE CD1 C Y N 271 PHE CD2 C Y N 272 PHE CE1 C Y N 273 PHE CE2 C Y N 274 PHE CZ C Y N 275 PHE OXT O N N 276 PHE H H N N 277 PHE H2 H N N 278 PHE HA H N N 279 PHE HB2 H N N 280 PHE HB3 H N N 281 PHE HD1 H N N 282 PHE HD2 H N N 283 PHE HE1 H N N 284 PHE HE2 H N N 285 PHE HZ H N N 286 PHE HXT H N N 287 PRO N N N N 288 PRO CA C N S 289 PRO C C N N 290 PRO O O N N 291 PRO CB C N N 292 PRO CG C N N 293 PRO CD C N N 294 PRO OXT O N N 295 PRO H H N N 296 PRO HA H N N 297 PRO HB2 H N N 298 PRO HB3 H N N 299 PRO HG2 H N N 300 PRO HG3 H N N 301 PRO HD2 H N N 302 PRO HD3 H N N 303 PRO HXT H N N 304 SER N N N N 305 SER CA C N S 306 SER C C N N 307 SER O O N N 308 SER CB C N N 309 SER OG O N N 310 SER OXT O N N 311 SER H H N N 312 SER H2 H N N 313 SER HA H N N 314 SER HB2 H N N 315 SER HB3 H N N 316 SER HG H N N 317 SER HXT H N N 318 THR N N N N 319 THR CA C N S 320 THR C C N N 321 THR O O N N 322 THR CB C N R 323 THR OG1 O N N 324 THR CG2 C N N 325 THR OXT O N N 326 THR H H N N 327 THR H2 H N N 328 THR HA H N N 329 THR HB H N N 330 THR HG1 H N N 331 THR HG21 H N N 332 THR HG22 H N N 333 THR HG23 H N N 334 THR HXT H N N 335 TRP N N N N 336 TRP CA C N S 337 TRP C C N N 338 TRP O O N N 339 TRP CB C N N 340 TRP CG C Y N 341 TRP CD1 C Y N 342 TRP CD2 C Y N 343 TRP NE1 N Y N 344 TRP CE2 C Y N 345 TRP CE3 C Y N 346 TRP CZ2 C Y N 347 TRP CZ3 C Y N 348 TRP CH2 C Y N 349 TRP OXT O N N 350 TRP H H N N 351 TRP H2 H N N 352 TRP HA H N N 353 TRP HB2 H N N 354 TRP HB3 H N N 355 TRP HD1 H N N 356 TRP HE1 H N N 357 TRP HE3 H N N 358 TRP HZ2 H N N 359 TRP HZ3 H N N 360 TRP HH2 H N N 361 TRP HXT H N N 362 TYR N N N N 363 TYR CA C N S 364 TYR C C N N 365 TYR O O N N 366 TYR CB C N N 367 TYR CG C Y N 368 TYR CD1 C Y N 369 TYR CD2 C Y N 370 TYR CE1 C Y N 371 TYR CE2 C Y N 372 TYR CZ C Y N 373 TYR OH O N N 374 TYR OXT O N N 375 TYR H H N N 376 TYR H2 H N N 377 TYR HA H N N 378 TYR HB2 H N N 379 TYR HB3 H N N 380 TYR HD1 H N N 381 TYR HD2 H N N 382 TYR HE1 H N N 383 TYR HE2 H N N 384 TYR HH H N N 385 TYR HXT H N N 386 VAL N N N N 387 VAL CA C N S 388 VAL C C N N 389 VAL O O N N 390 VAL CB C N N 391 VAL CG1 C N N 392 VAL CG2 C N N 393 VAL OXT O N N 394 VAL H H N N 395 VAL H2 H N N 396 VAL HA H N N 397 VAL HB H N N 398 VAL HG11 H N N 399 VAL HG12 H N N 400 VAL HG13 H N N 401 VAL HG21 H N N 402 VAL HG22 H N N 403 VAL HG23 H N N 404 VAL HXT H N N 405 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1R13 _pdbx_initial_refinement_model.details 'PDB CODE 1R13' # _atom_sites.entry_id 3PBF _atom_sites.fract_transf_matrix[1][1] 0.010269 _atom_sites.fract_transf_matrix[1][2] 0.005929 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011858 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022269 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_