HEADER HYDROLASE/ANTIBIOTIC 20-OCT-10 3PBT
TITLE CRYSTAL STRUCTURE OF PBP3 COMPLEXED WITH MC-1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 3;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 50-579;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA;
SOURCE 3 ORGANISM_TAXID: 208964;
SOURCE 4 STRAIN: PAO1;
SOURCE 5 GENE: FTSI, PA4418, PBPB;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS PBP3, HYDROLASE-ANTIBIOTIC COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR S.HAN,A.EVDOKIMOV
REVDAT 4 06-NOV-24 3PBT 1 COMPND REMARK SEQADV HETNAM
REVDAT 4 2 1 LINK
REVDAT 3 08-FEB-12 3PBT 1 FORMUL HET HETATM HETNAM
REVDAT 3 2 1 HETSYN LINK REMARK SITE
REVDAT 3 3 1 VERSN
REVDAT 2 05-JAN-11 3PBT 1 JRNL
REVDAT 1 22-DEC-10 3PBT 0
JRNL AUTH S.HAN,R.P.ZANIEWSKI,E.S.MARR,B.M.LACEY,A.P.TOMARAS,
JRNL AUTH 2 A.EVDOKIMOV,J.R.MILLER,V.SHANMUGASUNDARAM
JRNL TITL STRUCTURAL BASIS FOR EFFECTIVENESS OF SIDEROPHORE-CONJUGATED
JRNL TITL 2 MONOCARBAMS AGAINST CLINICALLY RELEVANT STRAINS OF
JRNL TITL 3 PSEUDOMONAS AERUGINOSA.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 22002 2010
JRNL REFN ISSN 0027-8424
JRNL PMID 21135211
JRNL DOI 10.1073/PNAS.1013092107
REMARK 2
REMARK 2 RESOLUTION. 1.64 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.4.0069
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.12
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4
REMARK 3 NUMBER OF REFLECTIONS : 58870
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.175
REMARK 3 R VALUE (WORKING SET) : 0.174
REMARK 3 FREE R VALUE : 0.206
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 3153
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68
REMARK 3 REFLECTION IN BIN (WORKING SET) : 3608
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.05
REMARK 3 BIN R VALUE (WORKING SET) : 0.2460
REMARK 3 BIN FREE R VALUE SET COUNT : 158
REMARK 3 BIN FREE R VALUE : 0.3260
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3822
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 48
REMARK 3 SOLVENT ATOMS : 539
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.65
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.74000
REMARK 3 B22 (A**2) : 0.25000
REMARK 3 B33 (A**2) : -0.99000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.097
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.788
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4106 ; 0.008 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5609 ; 1.698 ; 1.996
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 537 ; 6.818 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;32.981 ;23.081
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 677 ;13.860 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.854 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 628 ; 0.116 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3154 ; 0.006 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2545 ; 2.238 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4118 ; 3.403 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1561 ; 5.281 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1472 ; 8.215 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 3PBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-10.
REMARK 100 THE DEPOSITION ID IS D_1000062199.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 01-AUG-09
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.2
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 17-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62097
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640
REMARK 200 RESOLUTION RANGE LOW (A) : 61.120
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 43.56
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRATE, 30% PEG3350, 0.3M
REMARK 280 MG(NO3)2, PH 6.2, VAPOR DIFFUSION, HANGING DROP
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.88600
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.78450
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.88400
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.78450
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.88600
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.88400
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 42
REMARK 465 GLY A 43
REMARK 465 HIS A 44
REMARK 465 HIS A 45
REMARK 465 HIS A 46
REMARK 465 HIS A 47
REMARK 465 HIS A 48
REMARK 465 HIS A 49
REMARK 465 ALA A 50
REMARK 465 ARG A 51
REMARK 465 SER A 52
REMARK 465 VAL A 491
REMARK 465 SER A 492
REMARK 465 VAL A 493
REMARK 465 GLY A 494
REMARK 465 THR A 495
REMARK 465 LYS A 496
REMARK 465 GLY A 497
REMARK 465 TYR A 498
REMARK 465 ARG A 499
REMARK 465 GLU A 500
REMARK 465 THR A 564
REMARK 465 GLU A 565
REMARK 465 GLN A 566
REMARK 465 GLN A 567
REMARK 465 GLN A 568
REMARK 465 VAL A 569
REMARK 465 ASN A 570
REMARK 465 ALA A 571
REMARK 465 ALA A 572
REMARK 465 PRO A 573
REMARK 465 ALA A 574
REMARK 465 LYS A 575
REMARK 465 GLY A 576
REMARK 465 GLY A 577
REMARK 465 ARG A 578
REMARK 465 GLY A 579
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 680 O HOH A 688 1.82
REMARK 500 OE1 GLU A 159 O HOH A 1070 1.84
REMARK 500 O HOH A 19 O HOH A 1056 1.86
REMARK 500 O HOH A 711 O HOH A 1060 1.88
REMARK 500 O HOH A 805 O HOH A 1044 1.91
REMARK 500 NE2 GLN A 324 CB THR A 329 1.98
REMARK 500 O HOH A 929 O HOH A 1072 2.01
REMARK 500 C THR A 210 O HOH A 1073 2.07
REMARK 500 NE2 GLN A 324 CG2 THR A 329 2.10
REMARK 500 O HOH A 612 O HOH A 1036 2.10
REMARK 500 O HOH A 893 O HOH A 927 2.12
REMARK 500 OE1 GLU A 386 O HOH A 1040 2.12
REMARK 500 O HOH A 893 O HOH A 920 2.14
REMARK 500 OD1 ASP A 515 O HOH A 697 2.16
REMARK 500 O HOH A 726 O HOH A 1074 2.16
REMARK 500 O HOH A 601 O HOH A 1055 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 860 O HOH A 1013 3654 1.73
REMARK 500 O HOH A 664 O HOH A 1053 3645 1.81
REMARK 500 O HOH A 671 O HOH A 784 2565 2.06
REMARK 500 NZ LYS A 108 O HOH A 1061 1554 2.07
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 92 40.93 -141.72
REMARK 500 ASN A 275 -93.47 62.02
REMARK 500 LEU A 276 109.77 63.00
REMARK 500 PRO A 320 32.76 -97.64
REMARK 500 ARG A 338 -91.11 -122.89
REMARK 500 ASN A 427 41.29 -87.22
REMARK 500 ASN A 559 37.69 -143.58
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 GLY A 382 PHE A 383 -134.30
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UE1 A 1
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3PBN RELATED DB: PDB
REMARK 900 APO
REMARK 900 RELATED ID: 3PBO RELATED DB: PDB
REMARK 900 CEFTAZIDIME
REMARK 900 RELATED ID: 3PBQ RELATED DB: PDB
REMARK 900 IMIPENEM
REMARK 900 RELATED ID: 3PBR RELATED DB: PDB
REMARK 900 MEROPENEM
REMARK 900 RELATED ID: 3PBS RELATED DB: PDB
REMARK 900 AZTREONAM
DBREF 3PBT A 50 579 UNP Q51504 Q51504_PSEAE 50 579
SEQADV 3PBT MET A 42 UNP Q51504 EXPRESSION TAG
SEQADV 3PBT GLY A 43 UNP Q51504 EXPRESSION TAG
SEQADV 3PBT HIS A 44 UNP Q51504 EXPRESSION TAG
SEQADV 3PBT HIS A 45 UNP Q51504 EXPRESSION TAG
SEQADV 3PBT HIS A 46 UNP Q51504 EXPRESSION TAG
SEQADV 3PBT HIS A 47 UNP Q51504 EXPRESSION TAG
SEQADV 3PBT HIS A 48 UNP Q51504 EXPRESSION TAG
SEQADV 3PBT HIS A 49 UNP Q51504 EXPRESSION TAG
SEQRES 1 A 538 MET GLY HIS HIS HIS HIS HIS HIS ALA ARG SER VAL ARG
SEQRES 2 A 538 HIS ILE ALA ILE PRO ALA HIS ARG GLY LEU ILE THR ASP
SEQRES 3 A 538 ARG ASN GLY GLU PRO LEU ALA VAL SER THR PRO VAL THR
SEQRES 4 A 538 THR LEU TRP ALA ASN PRO LYS GLU LEU MET THR ALA LYS
SEQRES 5 A 538 GLU ARG TRP PRO GLN LEU ALA ALA ALA LEU GLY GLN ASP
SEQRES 6 A 538 THR LYS LEU PHE ALA ASP ARG ILE GLU GLN ASN ALA GLU
SEQRES 7 A 538 ARG GLU PHE ILE TYR LEU VAL ARG GLY LEU THR PRO GLU
SEQRES 8 A 538 GLN GLY GLU GLY VAL ILE ALA LEU LYS VAL PRO GLY VAL
SEQRES 9 A 538 TYR SER ILE GLU GLU PHE ARG ARG PHE TYR PRO ALA GLY
SEQRES 10 A 538 GLU VAL VAL ALA HIS ALA VAL GLY PHE THR ASP VAL ASP
SEQRES 11 A 538 ASP ARG GLY ARG GLU GLY ILE GLU LEU ALA PHE ASP GLU
SEQRES 12 A 538 TRP LEU ALA GLY VAL PRO GLY LYS ARG GLN VAL LEU LYS
SEQRES 13 A 538 ASP ARG ARG GLY ARG VAL ILE LYS ASP VAL GLN VAL THR
SEQRES 14 A 538 LYS ASN ALA LYS PRO GLY LYS THR LEU ALA LEU SER ILE
SEQRES 15 A 538 ASP LEU ARG LEU GLN TYR LEU ALA HIS ARG GLU LEU ARG
SEQRES 16 A 538 ASN ALA LEU LEU GLU ASN GLY ALA LYS ALA GLY SER LEU
SEQRES 17 A 538 VAL ILE MET ASP VAL LYS THR GLY GLU ILE LEU ALA MET
SEQRES 18 A 538 THR ASN GLN PRO THR TYR ASN PRO ASN ASN ARG ARG ASN
SEQRES 19 A 538 LEU GLN PRO ALA ALA MET ARG ASN ARG ALA MET ILE ASP
SEQRES 20 A 538 VAL PHE GLU PRO GLY SER THR VAL LYS PRO PHE SER MET
SEQRES 21 A 538 SER ALA ALA LEU ALA SER GLY ARG TRP LYS PRO SER ASP
SEQRES 22 A 538 ILE VAL ASP VAL TYR PRO GLY THR LEU GLN ILE GLY ARG
SEQRES 23 A 538 TYR THR ILE ARG ASP VAL SER ARG ASN SER ARG GLN LEU
SEQRES 24 A 538 ASP LEU THR GLY ILE LEU ILE LYS SER SER ASN VAL GLY
SEQRES 25 A 538 ILE SER LYS ILE ALA PHE ASP ILE GLY ALA GLU SER ILE
SEQRES 26 A 538 TYR SER VAL MET GLN GLN VAL GLY LEU GLY GLN ASP THR
SEQRES 27 A 538 GLY LEU GLY PHE PRO GLY GLU ARG VAL GLY ASN LEU PRO
SEQRES 28 A 538 ASN HIS ARG LYS TRP PRO LYS ALA GLU THR ALA THR LEU
SEQRES 29 A 538 ALA TYR GLY TYR GLY LEU SER VAL THR ALA ILE GLN LEU
SEQRES 30 A 538 ALA HIS ALA TYR ALA ALA LEU ALA ASN ASP GLY LYS SER
SEQRES 31 A 538 VAL PRO LEU SER MET THR ARG VAL ASP ARG VAL PRO ASP
SEQRES 32 A 538 GLY VAL GLN VAL ILE SER PRO GLU VAL ALA SER THR VAL
SEQRES 33 A 538 GLN GLY MET LEU GLN GLN VAL VAL GLU ALA GLN GLY GLY
SEQRES 34 A 538 VAL PHE ARG ALA GLN VAL PRO GLY TYR HIS ALA ALA GLY
SEQRES 35 A 538 LYS SER GLY THR ALA ARG LYS VAL SER VAL GLY THR LYS
SEQRES 36 A 538 GLY TYR ARG GLU ASN ALA TYR ARG SER LEU PHE ALA GLY
SEQRES 37 A 538 PHE ALA PRO ALA THR ASP PRO ARG ILE ALA MET VAL VAL
SEQRES 38 A 538 VAL ILE ASP GLU PRO SER LYS ALA GLY TYR PHE GLY GLY
SEQRES 39 A 538 LEU VAL SER ALA PRO VAL PHE SER LYS VAL MET ALA GLY
SEQRES 40 A 538 ALA LEU ARG LEU MET ASN VAL PRO PRO ASP ASN LEU PRO
SEQRES 41 A 538 THR ALA THR GLU GLN GLN GLN VAL ASN ALA ALA PRO ALA
SEQRES 42 A 538 LYS GLY GLY ARG GLY
HET UE1 A 1 96
HETNAM UE1 (4S,7Z)-7-(2-AMINO-1,3-THIAZOL-4-YL)-1-[({4-[(2R)-2,3-
HETNAM 2 UE1 DIHYDROXYPROPYL]-3-(4,5-DIHYDROXYPYRIDIN-2-YL)-5-OXO-
HETNAM 3 UE1 4,5-DIHYDRO- 1H-1,2,4-TRIAZOL-1-YL}SULFONYL)AMINO]-4-
HETNAM 4 UE1 FORMYL-10,10-DIMETHYL-1,6-DIOXO-9-OXA-2,5,8-
HETNAM 5 UE1 TRIAZAUNDEC-7-EN-11-OATE
HETSYN UE1 MC-1 (OPEN FORM)
FORMUL 2 UE1 C23 H27 N10 O13 S2 1-
FORMUL 3 HOH *539(H2 O)
HELIX 1 1 ASN A 85 MET A 90 1 6
HELIX 2 2 THR A 91 GLU A 94 5 4
HELIX 3 3 ARG A 95 LEU A 103 1 9
HELIX 4 4 ASP A 106 ASN A 117 1 12
HELIX 5 5 THR A 130 ALA A 139 1 10
HELIX 6 6 ALA A 157 VAL A 160 5 4
HELIX 7 7 VAL A 161 GLY A 166 1 6
HELIX 8 8 GLU A 176 PHE A 182 1 7
HELIX 9 9 PHE A 182 GLY A 188 1 7
HELIX 10 10 ASP A 224 ASN A 242 1 19
HELIX 11 11 GLN A 277 ARG A 282 5 6
HELIX 12 12 ASN A 283 ASP A 288 1 6
HELIX 13 13 PRO A 292 THR A 295 5 4
HELIX 14 14 VAL A 296 SER A 307 1 12
HELIX 15 15 LEU A 342 SER A 349 1 8
HELIX 16 16 SER A 350 GLY A 362 1 13
HELIX 17 17 GLY A 362 VAL A 373 1 12
HELIX 18 18 PRO A 398 TYR A 407 1 10
HELIX 19 19 THR A 414 ASN A 427 1 14
HELIX 20 20 SER A 450 ALA A 467 1 18
HELIX 21 21 VAL A 471 GLN A 475 5 5
HELIX 22 22 PHE A 533 SER A 538 1 6
HELIX 23 23 SER A 538 MET A 553 1 16
SHEET 1 A 3 HIS A 55 ILE A 58 0
SHEET 2 A 3 GLY A 191 LYS A 197 -1 O GLY A 191 N ILE A 58
SHEET 3 A 3 VAL A 203 LYS A 211 -1 O VAL A 207 N GLN A 194
SHEET 1 B 3 ILE A 123 LEU A 129 0
SHEET 2 B 3 PRO A 72 ALA A 84 -1 N ALA A 84 O ILE A 123
SHEET 3 B 3 VAL A 145 PHE A 154 -1 O ILE A 148 N THR A 81
SHEET 1 C 4 ILE A 123 LEU A 129 0
SHEET 2 C 4 PRO A 72 ALA A 84 -1 N ALA A 84 O ILE A 123
SHEET 3 C 4 ILE A 65 THR A 66 -1 N ILE A 65 O LEU A 73
SHEET 4 C 4 LEU A 219 ALA A 220 1 O LEU A 219 N THR A 66
SHEET 1 D 5 ILE A 259 GLN A 265 0
SHEET 2 D 5 ALA A 246 ASP A 253 -1 N ILE A 251 O ALA A 261
SHEET 3 D 5 ILE A 518 ASP A 525 -1 O VAL A 523 N SER A 248
SHEET 4 D 5 TYR A 503 ALA A 511 -1 N SER A 505 O ILE A 524
SHEET 5 D 5 ALA A 482 ARG A 489 -1 N GLY A 486 O LEU A 506
SHEET 1 E 2 ILE A 315 ASP A 317 0
SHEET 2 E 2 GLN A 339 ASP A 341 -1 O LEU A 340 N VAL A 316
SHEET 1 F 2 THR A 322 ILE A 325 0
SHEET 2 F 2 TYR A 328 ARG A 331 -1 O TYR A 328 N ILE A 325
SHEET 1 G 2 LYS A 430 SER A 431 0
SHEET 2 G 2 VAL A 446 GLN A 447 -1 O VAL A 446 N SER A 431
LINK C11AUE1 A 1 OG SER A 294 1555 1555 1.34
LINK C11BUE1 A 1 OG SER A 294 1555 1555 1.34
CISPEP 1 GLN A 265 PRO A 266 0 -0.08
CISPEP 2 TYR A 319 PRO A 320 0 3.44
CISPEP 3 ALA A 511 PRO A 512 0 -12.27
SITE 1 AC1 29 HOH A 26 HOH A 30 GLU A 291 SER A 294
SITE 2 AC1 29 VAL A 333 SER A 334 ILE A 347 LYS A 348
SITE 3 AC1 29 SER A 349 ASN A 351 GLY A 408 GLY A 470
SITE 4 AC1 29 LYS A 484 SER A 485 GLY A 486 THR A 487
SITE 5 AC1 29 ALA A 488 ARG A 489 TYR A 503 PHE A 533
SITE 6 AC1 29 GLY A 534 GLY A 535 HOH A 692 HOH A 843
SITE 7 AC1 29 HOH A 941 HOH A 947 HOH A1018 HOH A1072
SITE 8 AC1 29 HOH A1074
CRYST1 67.772 83.768 89.569 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014755 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011938 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011165 0.00000