data_3PDM # _entry.id 3PDM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3PDM pdb_00003pdm 10.2210/pdb3pdm/pdb NDB NA0834 ? ? RCSB RCSB062249 ? ? WWPDB D_1000062249 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_struct_oper_list.name' 5 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 6 4 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PDM _pdbx_database_status.recvd_initial_deposition_date 2010-10-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tewary, S.K.' 1 'Wong, S.M.' 2 'Swaminathan, K.' 3 # _citation.id primary _citation.title 'Structure of Hibiscus latent Singapore virus by fiber diffraction: A non-conserved His122 contributes to coat protein stability' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2010 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 1089-8638 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21195089 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2010.12.032 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tewary, S.K.' 1 ? primary 'Oda, T.' 2 ? primary 'Kendall, A.' 3 ? primary 'Bian, W.' 4 ? primary 'Stubbs, G.' 5 ? primary 'Wong, S.M.' 6 ? primary 'Swaminathan, K.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(P*GP*AP*A)-3') ; 958.660 1 ? ? ? ? 2 polymer nat 'Coat protein' 18079.273 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GAA GAA R ? 2 'polypeptide(L)' no no ;PYLNLTPLNLIYTSGTFAPYDVFLEILVKSRSNSFQTQAGRDTLREQLINSLQIVANLNTRYPLLGFYVWVRNPTLAPVF EALLRATDTKNRIIEVEEESRPTTAETLNATQRVDDATVAIHKEIDNILLLLQGGTAVYDRTAFEVASGLSWADPTTTST TT ; ;PYLNLTPLNLIYTSGTFAPYDVFLEILVKSRSNSFQTQAGRDTLREQLINSLQIVANLNTRYPLLGFYVWVRNPTLAPVF EALLRATDTKNRIIEVEEESRPTTAETLNATQRVDDATVAIHKEIDNILLLLQGGTAVYDRTAFEVASGLSWADPTTTST TT ; P ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 A n 2 1 PRO n 2 2 TYR n 2 3 LEU n 2 4 ASN n 2 5 LEU n 2 6 THR n 2 7 PRO n 2 8 LEU n 2 9 ASN n 2 10 LEU n 2 11 ILE n 2 12 TYR n 2 13 THR n 2 14 SER n 2 15 GLY n 2 16 THR n 2 17 PHE n 2 18 ALA n 2 19 PRO n 2 20 TYR n 2 21 ASP n 2 22 VAL n 2 23 PHE n 2 24 LEU n 2 25 GLU n 2 26 ILE n 2 27 LEU n 2 28 VAL n 2 29 LYS n 2 30 SER n 2 31 ARG n 2 32 SER n 2 33 ASN n 2 34 SER n 2 35 PHE n 2 36 GLN n 2 37 THR n 2 38 GLN n 2 39 ALA n 2 40 GLY n 2 41 ARG n 2 42 ASP n 2 43 THR n 2 44 LEU n 2 45 ARG n 2 46 GLU n 2 47 GLN n 2 48 LEU n 2 49 ILE n 2 50 ASN n 2 51 SER n 2 52 LEU n 2 53 GLN n 2 54 ILE n 2 55 VAL n 2 56 ALA n 2 57 ASN n 2 58 LEU n 2 59 ASN n 2 60 THR n 2 61 ARG n 2 62 TYR n 2 63 PRO n 2 64 LEU n 2 65 LEU n 2 66 GLY n 2 67 PHE n 2 68 TYR n 2 69 VAL n 2 70 TRP n 2 71 VAL n 2 72 ARG n 2 73 ASN n 2 74 PRO n 2 75 THR n 2 76 LEU n 2 77 ALA n 2 78 PRO n 2 79 VAL n 2 80 PHE n 2 81 GLU n 2 82 ALA n 2 83 LEU n 2 84 LEU n 2 85 ARG n 2 86 ALA n 2 87 THR n 2 88 ASP n 2 89 THR n 2 90 LYS n 2 91 ASN n 2 92 ARG n 2 93 ILE n 2 94 ILE n 2 95 GLU n 2 96 VAL n 2 97 GLU n 2 98 GLU n 2 99 GLU n 2 100 SER n 2 101 ARG n 2 102 PRO n 2 103 THR n 2 104 THR n 2 105 ALA n 2 106 GLU n 2 107 THR n 2 108 LEU n 2 109 ASN n 2 110 ALA n 2 111 THR n 2 112 GLN n 2 113 ARG n 2 114 VAL n 2 115 ASP n 2 116 ASP n 2 117 ALA n 2 118 THR n 2 119 VAL n 2 120 ALA n 2 121 ILE n 2 122 HIS n 2 123 LYS n 2 124 GLU n 2 125 ILE n 2 126 ASP n 2 127 ASN n 2 128 ILE n 2 129 LEU n 2 130 LEU n 2 131 LEU n 2 132 LEU n 2 133 GLN n 2 134 GLY n 2 135 GLY n 2 136 THR n 2 137 ALA n 2 138 VAL n 2 139 TYR n 2 140 ASP n 2 141 ARG n 2 142 THR n 2 143 ALA n 2 144 PHE n 2 145 GLU n 2 146 VAL n 2 147 ALA n 2 148 SER n 2 149 GLY n 2 150 LEU n 2 151 SER n 2 152 TRP n 2 153 ALA n 2 154 ASP n 2 155 PRO n 2 156 THR n 2 157 THR n 2 158 THR n 2 159 SER n 2 160 THR n 2 161 THR n 2 162 THR n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Hibiscus latent Singapore virus' _entity_src_nat.pdbx_ncbi_taxonomy_id 185955 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthetic RNA' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G R . n A 1 2 A 2 2 2 A A R . n A 1 3 A 3 3 3 A A R . n B 2 1 PRO 1 1 1 PRO PRO P . n B 2 2 TYR 2 2 2 TYR TYR P . n B 2 3 LEU 3 3 3 LEU LEU P . n B 2 4 ASN 4 4 4 ASN ASN P . n B 2 5 LEU 5 5 5 LEU LEU P . n B 2 6 THR 6 6 6 THR THR P . n B 2 7 PRO 7 7 7 PRO PRO P . n B 2 8 LEU 8 8 8 LEU LEU P . n B 2 9 ASN 9 9 9 ASN ASN P . n B 2 10 LEU 10 10 10 LEU LEU P . n B 2 11 ILE 11 11 11 ILE ILE P . n B 2 12 TYR 12 12 12 TYR TYR P . n B 2 13 THR 13 13 13 THR THR P . n B 2 14 SER 14 14 14 SER SER P . n B 2 15 GLY 15 15 15 GLY GLY P . n B 2 16 THR 16 16 16 THR THR P . n B 2 17 PHE 17 17 17 PHE PHE P . n B 2 18 ALA 18 18 18 ALA ALA P . n B 2 19 PRO 19 19 19 PRO PRO P . n B 2 20 TYR 20 20 20 TYR TYR P . n B 2 21 ASP 21 21 21 ASP ASP P . n B 2 22 VAL 22 22 22 VAL VAL P . n B 2 23 PHE 23 23 23 PHE PHE P . n B 2 24 LEU 24 24 24 LEU LEU P . n B 2 25 GLU 25 25 25 GLU GLU P . n B 2 26 ILE 26 26 26 ILE ILE P . n B 2 27 LEU 27 27 27 LEU LEU P . n B 2 28 VAL 28 28 28 VAL VAL P . n B 2 29 LYS 29 29 29 LYS LYS P . n B 2 30 SER 30 30 30 SER SER P . n B 2 31 ARG 31 31 31 ARG ARG P . n B 2 32 SER 32 32 32 SER SER P . n B 2 33 ASN 33 33 33 ASN ASN P . n B 2 34 SER 34 34 34 SER SER P . n B 2 35 PHE 35 35 35 PHE PHE P . n B 2 36 GLN 36 36 36 GLN GLN P . n B 2 37 THR 37 37 37 THR THR P . n B 2 38 GLN 38 38 38 GLN GLN P . n B 2 39 ALA 39 39 39 ALA ALA P . n B 2 40 GLY 40 40 40 GLY GLY P . n B 2 41 ARG 41 41 41 ARG ARG P . n B 2 42 ASP 42 42 42 ASP ASP P . n B 2 43 THR 43 43 43 THR THR P . n B 2 44 LEU 44 44 44 LEU LEU P . n B 2 45 ARG 45 45 45 ARG ARG P . n B 2 46 GLU 46 46 46 GLU GLU P . n B 2 47 GLN 47 47 47 GLN GLN P . n B 2 48 LEU 48 48 48 LEU LEU P . n B 2 49 ILE 49 49 49 ILE ILE P . n B 2 50 ASN 50 50 50 ASN ASN P . n B 2 51 SER 51 51 51 SER SER P . n B 2 52 LEU 52 52 52 LEU LEU P . n B 2 53 GLN 53 53 53 GLN GLN P . n B 2 54 ILE 54 54 54 ILE ILE P . n B 2 55 VAL 55 55 55 VAL VAL P . n B 2 56 ALA 56 56 56 ALA ALA P . n B 2 57 ASN 57 57 57 ASN ASN P . n B 2 58 LEU 58 58 58 LEU LEU P . n B 2 59 ASN 59 59 59 ASN ASN P . n B 2 60 THR 60 60 60 THR THR P . n B 2 61 ARG 61 61 61 ARG ARG P . n B 2 62 TYR 62 62 62 TYR TYR P . n B 2 63 PRO 63 63 63 PRO PRO P . n B 2 64 LEU 64 64 64 LEU LEU P . n B 2 65 LEU 65 65 65 LEU LEU P . n B 2 66 GLY 66 66 66 GLY GLY P . n B 2 67 PHE 67 67 67 PHE PHE P . n B 2 68 TYR 68 68 68 TYR TYR P . n B 2 69 VAL 69 69 69 VAL VAL P . n B 2 70 TRP 70 70 70 TRP TRP P . n B 2 71 VAL 71 71 71 VAL VAL P . n B 2 72 ARG 72 72 72 ARG ARG P . n B 2 73 ASN 73 73 73 ASN ASN P . n B 2 74 PRO 74 74 74 PRO PRO P . n B 2 75 THR 75 75 75 THR THR P . n B 2 76 LEU 76 76 76 LEU LEU P . n B 2 77 ALA 77 77 77 ALA ALA P . n B 2 78 PRO 78 78 78 PRO PRO P . n B 2 79 VAL 79 79 79 VAL VAL P . n B 2 80 PHE 80 80 80 PHE PHE P . n B 2 81 GLU 81 81 81 GLU GLU P . n B 2 82 ALA 82 82 82 ALA ALA P . n B 2 83 LEU 83 83 83 LEU LEU P . n B 2 84 LEU 84 84 84 LEU LEU P . n B 2 85 ARG 85 85 85 ARG ARG P . n B 2 86 ALA 86 86 86 ALA ALA P . n B 2 87 THR 87 87 87 THR THR P . n B 2 88 ASP 88 88 88 ASP ASP P . n B 2 89 THR 89 89 89 THR THR P . n B 2 90 LYS 90 90 90 LYS LYS P . n B 2 91 ASN 91 91 91 ASN ASN P . n B 2 92 ARG 92 92 92 ARG ARG P . n B 2 93 ILE 93 93 93 ILE ILE P . n B 2 94 ILE 94 94 94 ILE ILE P . n B 2 95 GLU 95 95 95 GLU GLU P . n B 2 96 VAL 96 96 96 VAL VAL P . n B 2 97 GLU 97 97 97 GLU GLU P . n B 2 98 GLU 98 98 98 GLU GLU P . n B 2 99 GLU 99 99 99 GLU GLU P . n B 2 100 SER 100 100 100 SER SER P . n B 2 101 ARG 101 101 101 ARG ARG P . n B 2 102 PRO 102 102 102 PRO PRO P . n B 2 103 THR 103 103 103 THR THR P . n B 2 104 THR 104 104 104 THR THR P . n B 2 105 ALA 105 105 105 ALA ALA P . n B 2 106 GLU 106 106 106 GLU GLU P . n B 2 107 THR 107 107 107 THR THR P . n B 2 108 LEU 108 108 108 LEU LEU P . n B 2 109 ASN 109 109 109 ASN ASN P . n B 2 110 ALA 110 110 110 ALA ALA P . n B 2 111 THR 111 111 111 THR THR P . n B 2 112 GLN 112 112 112 GLN GLN P . n B 2 113 ARG 113 113 113 ARG ARG P . n B 2 114 VAL 114 114 114 VAL VAL P . n B 2 115 ASP 115 115 115 ASP ASP P . n B 2 116 ASP 116 116 116 ASP ASP P . n B 2 117 ALA 117 117 117 ALA ALA P . n B 2 118 THR 118 118 118 THR THR P . n B 2 119 VAL 119 119 119 VAL VAL P . n B 2 120 ALA 120 120 120 ALA ALA P . n B 2 121 ILE 121 121 121 ILE ILE P . n B 2 122 HIS 122 122 122 HIS HIS P . n B 2 123 LYS 123 123 123 LYS LYS P . n B 2 124 GLU 124 124 124 GLU GLU P . n B 2 125 ILE 125 125 125 ILE ILE P . n B 2 126 ASP 126 126 126 ASP ASP P . n B 2 127 ASN 127 127 127 ASN ASN P . n B 2 128 ILE 128 128 128 ILE ILE P . n B 2 129 LEU 129 129 129 LEU LEU P . n B 2 130 LEU 130 130 130 LEU LEU P . n B 2 131 LEU 131 131 131 LEU LEU P . n B 2 132 LEU 132 132 132 LEU LEU P . n B 2 133 GLN 133 133 133 GLN GLN P . n B 2 134 GLY 134 134 134 GLY GLY P . n B 2 135 GLY 135 135 135 GLY GLY P . n B 2 136 THR 136 136 136 THR THR P . n B 2 137 ALA 137 137 137 ALA ALA P . n B 2 138 VAL 138 138 138 VAL VAL P . n B 2 139 TYR 139 139 139 TYR TYR P . n B 2 140 ASP 140 140 140 ASP ASP P . n B 2 141 ARG 141 141 141 ARG ARG P . n B 2 142 THR 142 142 142 THR THR P . n B 2 143 ALA 143 143 143 ALA ALA P . n B 2 144 PHE 144 144 144 PHE PHE P . n B 2 145 GLU 145 145 145 GLU GLU P . n B 2 146 VAL 146 146 146 VAL VAL P . n B 2 147 ALA 147 147 147 ALA ALA P . n B 2 148 SER 148 148 148 SER SER P . n B 2 149 GLY 149 149 149 GLY GLY P . n B 2 150 LEU 150 150 150 LEU LEU P . n B 2 151 SER 151 151 151 SER SER P . n B 2 152 TRP 152 152 152 TRP TRP P . n B 2 153 ALA 153 153 153 ALA ALA P . n B 2 154 ASP 154 154 154 ASP ASP P . n B 2 155 PRO 155 155 155 PRO PRO P . n B 2 156 THR 156 156 156 THR THR P . n B 2 157 THR 157 157 157 THR THR P . n B 2 158 THR 158 158 158 THR THR P . n B 2 159 SER 159 159 159 SER SER P . n B 2 160 THR 160 160 160 THR THR P . n B 2 161 THR 161 161 161 THR THR P . n B 2 162 THR 162 162 162 THR THR P . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 X-PLOR 'model building' . ? 2 X-PLOR refinement . ? 3 WCEN 'data reduction' . ? 4 RAD 'data reduction' . ? 5 CORR 'data reduction' . ? 6 WCEN 'data scaling' . ? 7 RAD 'data scaling' . ? 8 CORR 'data scaling' . ? 9 X-PLOR phasing . ? 10 # _cell.entry_id 3PDM _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PDM _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3PDM _exptl.method 'FIBER DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'Oriented sol' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'Oriented sol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9002 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9002 # _reflns.entry_id 3PDM _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 50 _reflns.d_resolution_high 3.5 _reflns.number_obs 3486 _reflns.number_all 3486 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 3PDM _refine.ls_number_reflns_obs 3486 _refine.ls_number_reflns_all 3486 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 3.5 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.096 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.096 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THE STRUCTURE WAS DETERMINED BY FIBER DIFFRACTION USING MOLECULAR REPLACEMENT WITH LAYER-LINE SPLITTING, SOLVENT FLATTENING REFINEMENT AND RESTRAINED LEAST SQUARES COORDINATE REFINEMENT. THE STRUCTURE INCLUDES 162 OF THE 163 AMINO ACIDS AND THREE RNA NUCLEOTIDES MODELLED AS GAA BUT REPRESENTING THE ENTIRE NUCLEIC ACID CONTENT. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'FIBER DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'FIBER DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1277 _refine_hist.pdbx_number_atoms_nucleic_acid 64 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1341 _refine_hist.d_res_high 3.5 _refine_hist.d_res_low 50 # _database_PDB_matrix.entry_id 3PDM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3PDM _struct.title 'Hibiscus Latent Singapore virus' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PDM _struct_keywords.pdbx_keywords VIRUS _struct_keywords.text 'HELICAL VIRUS, VIRUS-RNA COMPLEX, VIRUS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 3PDM 3PDM 1 ? 1 ? 2 UNP Q8BE68_9VIRU Q8BE68 2 ;PYLNLTPLNLIYTSGTFAPYDVFLEILVKSRSNSFQTQAGRDTLREQLINSLQIVANLNTRYPLLGFYVWVRNPTLAPVF EALLRATDTKNRIIEVEEESRPTTAETLNATQRVDDATVAIHKEIDNILLLLQGGTAVYDRTAFEVASGLSWADPTTTST TT ; 2 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3PDM R 1 ? 3 ? 3PDM 1 ? 3 ? 1 3 2 2 3PDM P 1 ? 162 ? Q8BE68 2 ? 163 ? 1 162 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 98-meric 98 2 'helical asymmetric unit' ? dimeric 2 3 'helical asymmetric unit, std helical frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-49)' A,B 2 25 A,B 3 H A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? -0.98157386 0.19108311 0.00000000 0.00000 -0.19108311 -0.98157386 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -34.53600 2 'helical symmetry operation' ? ? -0.83812833 0.54547311 0.00000000 0.00000 -0.54547311 -0.83812833 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -33.09700 3 'helical symmetry operation' ? ? -0.57217450 0.82013190 0.00000000 0.00000 -0.82013190 -0.57217450 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -31.65800 4 'helical symmetry operation' ? ? -0.22258657 0.97491293 0.00000000 0.00000 -0.97491293 -0.22258657 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -30.21900 5 'helical symmetry operation' ? ? 0.15953660 0.98719201 0.00000000 0.00000 -0.98719201 0.15953660 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -28.78000 6 'helical symmetry operation' ? ? 0.51834048 0.85517434 0.00000000 0.00000 -0.85517434 0.51834048 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -27.34100 7 'helical symmetry operation' ? ? 0.80137911 0.59815677 0.00000000 0.00000 -0.59815677 0.80137911 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -25.90200 8 'helical symmetry operation' ? ? 0.96728104 0.25370730 0.00000000 0.00000 -0.25370730 0.96728104 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -24.46300 9 'helical symmetry operation' ? ? 0.99179657 -0.12782629 0.00000000 0.00000 0.12782629 0.99179657 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -23.02400 10 'helical symmetry operation' ? ? 0.87134230 -0.49067565 0.00000000 0.00000 0.49067565 0.87134230 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -21.58500 11 'helical symmetry operation' ? ? 0.62352489 -0.78180350 0.00000000 0.00000 0.78180350 0.62352489 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -20.14600 12 'helical symmetry operation' ? ? 0.28456754 -0.95865599 0.00000000 0.00000 0.95865599 0.28456754 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -18.70700 13 'helical symmetry operation' ? ? -0.09598474 -0.99538281 0.00000000 0.00000 0.99538281 -0.09598474 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -17.26800 14 'helical symmetry operation' ? ? -0.46250703 -0.88661562 0.00000000 0.00000 0.88661562 -0.46250703 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -15.82900 15 'helical symmetry operation' ? ? -0.76142518 -0.64825280 0.00000000 0.00000 0.64825280 -0.76142518 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -14.39000 16 'helical symmetry operation' ? ? -0.94904666 -0.31513560 0.00000000 0.00000 0.31513560 -0.94904666 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -12.95100 17 'helical symmetry operation' ? ? -0.99794704 0.06404463 0.00000000 0.00000 -0.06404463 -0.99794704 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -11.51200 18 'helical symmetry operation' ? ? -0.90097860 0.43386352 0.00000000 0.00000 -0.43386352 -0.90097860 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -10.07300 19 'helical symmetry operation' ? ? -0.67231513 0.74026507 0.00000000 0.00000 -0.74026507 -0.67231513 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -8.63400 20 'helical symmetry operation' ? ? -0.34538010 0.93846289 0.00000000 0.00000 -0.93846289 -0.34538010 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -7.19500 21 'helical symmetry operation' ? ? 0.03203876 0.99948663 0.00000000 0.00000 -0.99948663 0.03203876 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -5.75600 22 'helical symmetry operation' ? ? 0.40477455 0.91441652 0.00000000 0.00000 -0.91441652 0.40477455 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -4.31700 23 'helical symmetry operation' ? ? 0.71834489 0.69568716 0.00000000 0.00000 -0.69568716 0.71834489 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -2.87800 24 'helical symmetry operation' ? ? 0.92691555 0.37526998 0.00000000 0.00000 -0.37526998 0.92691555 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -1.43900 25 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 26 'helical symmetry operation' ? ? 0.92691555 -0.37526998 0.00000000 0.00000 0.37526998 0.92691555 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 1.43900 27 'helical symmetry operation' ? ? 0.71834489 -0.69568716 0.00000000 0.00000 0.69568716 0.71834489 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 2.87800 28 'helical symmetry operation' ? ? 0.40477455 -0.91441652 0.00000000 0.00000 0.91441652 0.40477455 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 4.31700 29 'helical symmetry operation' ? ? 0.03203876 -0.99948663 0.00000000 0.00000 0.99948663 0.03203876 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 5.75600 30 'helical symmetry operation' ? ? -0.34538010 -0.93846289 0.00000000 0.00000 0.93846289 -0.34538010 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 7.19500 31 'helical symmetry operation' ? ? -0.67231513 -0.74026507 0.00000000 0.00000 0.74026507 -0.67231513 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 8.63400 32 'helical symmetry operation' ? ? -0.90097860 -0.43386352 0.00000000 0.00000 0.43386352 -0.90097860 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 10.07300 33 'helical symmetry operation' ? ? -0.99794704 -0.06404463 0.00000000 0.00000 0.06404463 -0.99794704 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 11.51200 34 'helical symmetry operation' ? ? -0.94904666 0.31513560 0.00000000 0.00000 -0.31513560 -0.94904666 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 12.95100 35 'helical symmetry operation' ? ? -0.76142518 0.64825280 0.00000000 0.00000 -0.64825280 -0.76142518 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 14.39000 36 'helical symmetry operation' ? ? -0.46250703 0.88661562 0.00000000 0.00000 -0.88661562 -0.46250703 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 15.82900 37 'helical symmetry operation' ? ? -0.09598474 0.99538281 0.00000000 0.00000 -0.99538281 -0.09598474 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 17.26800 38 'helical symmetry operation' ? ? 0.28456754 0.95865599 0.00000000 0.00000 -0.95865599 0.28456754 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 18.70700 39 'helical symmetry operation' ? ? 0.62352489 0.78180350 0.00000000 0.00000 -0.78180350 0.62352489 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 20.14600 40 'helical symmetry operation' ? ? 0.87134230 0.49067565 0.00000000 0.00000 -0.49067565 0.87134230 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 21.58500 41 'helical symmetry operation' ? ? 0.99179657 0.12782629 0.00000000 0.00000 -0.12782629 0.99179657 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 23.02400 42 'helical symmetry operation' ? ? 0.96728104 -0.25370730 0.00000000 0.00000 0.25370730 0.96728104 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 24.46300 43 'helical symmetry operation' ? ? 0.80137911 -0.59815677 0.00000000 0.00000 0.59815677 0.80137911 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 25.90200 44 'helical symmetry operation' ? ? 0.51834048 -0.85517434 0.00000000 0.00000 0.85517434 0.51834048 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 27.34100 45 'helical symmetry operation' ? ? 0.15953660 -0.98719201 0.00000000 0.00000 0.98719201 0.15953660 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 28.78000 46 'helical symmetry operation' ? ? -0.22258657 -0.97491293 0.00000000 0.00000 0.97491293 -0.22258657 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 30.21900 47 'helical symmetry operation' ? ? -0.57217450 -0.82013190 0.00000000 0.00000 0.82013190 -0.57217450 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 31.65800 48 'helical symmetry operation' ? ? -0.83812833 -0.54547311 0.00000000 0.00000 0.54547311 -0.83812833 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 33.09700 49 'helical symmetry operation' ? ? -0.98157386 -0.19108311 0.00000000 0.00000 0.19108311 -0.98157386 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 34.53600 # _struct_biol.id 1 _struct_biol.details ;HLSV IS A ROD-SHAPED VIRUS 3000 ANGSTROMS LONG AND 180 ANGSTROMS IN DIAMETER, WITH A CENTRAL HOLE OF DIAMETER 40 ANGSTROMS. APPROXIMATELY 2150 IDENTICAL PROTEIN SUBUNITS OF MOLECULAR WEIGHT 17500 FORM A RIGHT-HANDED HELIX OF PITCH 23.5 ANGSTROMS AND LENGTH 70.5 ANGTROMS WITH 49 SUBUNITS IN THREE TURNS. A SINGLE STRAND OF RNA FOLLOWS THE BASIC HELIX BETWEEN THE PROTEIN SUBUNITS AT A DISTANCE OF 40 ANGSTROMS. THERE ARE THREE NUCLEOTIDES BOUND TO EACH PROTEIN SUBUNIT. THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR HELICAL SYMMETRY WITH THE FOLLOWING PARAMETERS: ROTATION PER SUBUNIT (TWIST) = 1080.00/49 DEGREES RISE PER SUBUNIT (HEIGHT) = 70.5/49 ANGSTROMS COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR B 20 ? LYS B 29 ? TYR P 20 LYS P 29 1 ? 10 HELX_P HELX_P2 2 ALA B 39 ? ASN B 50 ? ALA P 39 ASN P 50 1 ? 12 HELX_P HELX_P3 3 LEU B 76 ? ARG B 85 ? LEU P 76 ARG P 85 1 ? 10 HELX_P HELX_P4 4 PRO B 102 ? GLU B 106 ? PRO P 102 GLU P 106 5 ? 5 HELX_P HELX_P5 5 THR B 111 ? THR B 118 ? THR P 111 THR P 118 1 ? 8 HELX_P HELX_P6 6 VAL B 119 ? LEU B 132 ? VAL P 119 LEU P 132 1 ? 14 HELX_P HELX_P7 7 ARG B 141 ? GLY B 149 ? ARG P 141 GLY P 149 1 ? 9 HELX_P HELX_P8 8 THR B 156 ? THR B 161 ? THR P 156 THR P 161 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 H3 _pdbx_validate_close_contact.auth_asym_id_1 P _pdbx_validate_close_contact.auth_comp_id_1 PRO _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 P _pdbx_validate_close_contact.auth_comp_id_2 ALA _pdbx_validate_close_contact.auth_seq_id_2 153 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" R A 2 ? ? P R A 2 ? ? OP1 R A 2 ? ? 98.88 105.70 -6.82 0.90 N 2 1 N9 R A 3 ? ? "C1'" R A 3 ? ? "C2'" R A 3 ? ? 103.60 112.00 -8.40 1.10 N 3 1 C P TYR 62 ? ? N P PRO 63 ? ? CA P PRO 63 ? ? 135.39 119.30 16.09 1.50 Y 4 1 C P TYR 62 ? ? N P PRO 63 ? ? CD P PRO 63 ? ? 114.43 128.40 -13.97 2.10 Y 5 1 CA P LEU 64 ? ? CB P LEU 64 ? ? CG P LEU 64 ? ? 134.21 115.30 18.91 2.30 N 6 1 CA P LEU 65 ? ? CB P LEU 65 ? ? CG P LEU 65 ? ? 131.97 115.30 16.67 2.30 N 7 1 CA P LEU 108 ? ? CB P LEU 108 ? ? CG P LEU 108 ? ? 130.87 115.30 15.57 2.30 N 8 1 CA P LEU 132 ? ? CB P LEU 132 ? ? CG P LEU 132 ? ? 129.18 115.30 13.88 2.30 N 9 1 N P GLY 135 ? ? CA P GLY 135 ? ? C P GLY 135 ? ? 129.62 113.10 16.52 2.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU P 5 ? ? -2.01 -98.99 2 1 PRO P 7 ? ? -33.23 -13.70 3 1 ASN P 9 ? ? 158.08 -36.32 4 1 LEU P 10 ? ? -72.63 32.31 5 1 ILE P 11 ? ? -130.92 -89.42 6 1 THR P 13 ? ? -171.18 -36.01 7 1 ALA P 18 ? ? 164.38 -83.02 8 1 PRO P 19 ? ? -114.50 -148.11 9 1 TYR P 20 ? ? -138.96 -90.21 10 1 VAL P 22 ? ? -56.51 -99.19 11 1 LEU P 24 ? ? -41.39 -75.80 12 1 ILE P 26 ? ? -63.84 21.03 13 1 SER P 32 ? ? -75.36 27.90 14 1 ASN P 33 ? ? -152.98 -112.84 15 1 GLN P 38 ? ? -53.07 -5.29 16 1 ALA P 39 ? ? -77.20 -85.14 17 1 ARG P 45 ? ? -9.44 -79.47 18 1 SER P 51 ? ? -141.15 32.78 19 1 LEU P 52 ? ? -162.43 78.72 20 1 ILE P 54 ? ? -45.60 78.13 21 1 ALA P 56 ? ? 45.68 23.55 22 1 ASN P 57 ? ? -54.12 -169.79 23 1 THR P 60 ? ? 175.09 -119.62 24 1 ARG P 61 ? ? 166.99 178.75 25 1 PRO P 63 ? ? -28.04 116.82 26 1 LEU P 64 ? ? -47.78 -93.13 27 1 LEU P 65 ? ? -84.20 33.95 28 1 VAL P 71 ? ? -90.94 -79.16 29 1 ARG P 72 ? ? -50.35 107.66 30 1 THR P 75 ? ? -102.99 -70.11 31 1 ALA P 77 ? ? -27.20 -71.82 32 1 PRO P 78 ? ? -61.43 7.28 33 1 PHE P 80 ? ? -57.84 -73.74 34 1 LEU P 84 ? ? -29.83 -51.42 35 1 ASP P 88 ? ? -157.82 47.00 36 1 THR P 89 ? ? -141.93 -9.07 37 1 LYS P 90 ? ? -65.93 49.56 38 1 ASN P 91 ? ? 84.31 -169.50 39 1 ARG P 92 ? ? -171.82 -10.51 40 1 GLU P 95 ? ? -58.85 85.50 41 1 VAL P 96 ? ? -119.75 -168.66 42 1 GLU P 97 ? ? 167.19 -117.57 43 1 THR P 103 ? ? -65.38 29.16 44 1 THR P 107 ? ? 169.27 70.96 45 1 LEU P 108 ? ? -160.10 -91.59 46 1 THR P 111 ? ? 5.21 -52.41 47 1 ALA P 120 ? ? -53.39 -7.45 48 1 LYS P 123 ? ? -58.63 -89.03 49 1 GLU P 124 ? ? -38.06 -8.90 50 1 ALA P 137 ? ? 89.50 -54.30 51 1 VAL P 138 ? ? -37.52 144.11 52 1 TYR P 139 ? ? 178.47 135.99 53 1 ASP P 140 ? ? -25.14 -65.74 54 1 ARG P 141 ? ? 168.96 -46.58 55 1 VAL P 146 ? ? -75.69 -71.94 56 1 ALA P 147 ? ? -59.91 12.93 57 1 SER P 148 ? ? -135.87 -33.26 58 1 LEU P 150 ? ? -54.99 108.13 59 1 ASP P 154 ? ? 107.28 105.39 60 1 SER P 159 ? ? 92.10 0.17 61 1 THR P 160 ? ? -167.12 41.49 62 1 THR P 161 ? ? -23.40 138.14 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id A _pdbx_validate_planes.auth_asym_id R _pdbx_validate_planes.auth_seq_id 3 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.060 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_helical_symmetry.entry_id 3PDM _pdbx_helical_symmetry.number_of_operations 49 _pdbx_helical_symmetry.rotation_per_n_subunits 22.041000 _pdbx_helical_symmetry.rise_per_n_subunits 1.439000 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 G OP3 O N N 111 G P P N N 112 G OP1 O N N 113 G OP2 O N N 114 G "O5'" O N N 115 G "C5'" C N N 116 G "C4'" C N R 117 G "O4'" O N N 118 G "C3'" C N S 119 G "O3'" O N N 120 G "C2'" C N R 121 G "O2'" O N N 122 G "C1'" C N R 123 G N9 N Y N 124 G C8 C Y N 125 G N7 N Y N 126 G C5 C Y N 127 G C6 C N N 128 G O6 O N N 129 G N1 N N N 130 G C2 C N N 131 G N2 N N N 132 G N3 N N N 133 G C4 C Y N 134 G HOP3 H N N 135 G HOP2 H N N 136 G "H5'" H N N 137 G "H5''" H N N 138 G "H4'" H N N 139 G "H3'" H N N 140 G "HO3'" H N N 141 G "H2'" H N N 142 G "HO2'" H N N 143 G "H1'" H N N 144 G H8 H N N 145 G H1 H N N 146 G H21 H N N 147 G H22 H N N 148 GLN N N N N 149 GLN CA C N S 150 GLN C C N N 151 GLN O O N N 152 GLN CB C N N 153 GLN CG C N N 154 GLN CD C N N 155 GLN OE1 O N N 156 GLN NE2 N N N 157 GLN OXT O N N 158 GLN H H N N 159 GLN H2 H N N 160 GLN HA H N N 161 GLN HB2 H N N 162 GLN HB3 H N N 163 GLN HG2 H N N 164 GLN HG3 H N N 165 GLN HE21 H N N 166 GLN HE22 H N N 167 GLN HXT H N N 168 GLU N N N N 169 GLU CA C N S 170 GLU C C N N 171 GLU O O N N 172 GLU CB C N N 173 GLU CG C N N 174 GLU CD C N N 175 GLU OE1 O N N 176 GLU OE2 O N N 177 GLU OXT O N N 178 GLU H H N N 179 GLU H2 H N N 180 GLU HA H N N 181 GLU HB2 H N N 182 GLU HB3 H N N 183 GLU HG2 H N N 184 GLU HG3 H N N 185 GLU HE2 H N N 186 GLU HXT H N N 187 GLY N N N N 188 GLY CA C N N 189 GLY C C N N 190 GLY O O N N 191 GLY OXT O N N 192 GLY H H N N 193 GLY H2 H N N 194 GLY HA2 H N N 195 GLY HA3 H N N 196 GLY HXT H N N 197 HIS N N N N 198 HIS CA C N S 199 HIS C C N N 200 HIS O O N N 201 HIS CB C N N 202 HIS CG C Y N 203 HIS ND1 N Y N 204 HIS CD2 C Y N 205 HIS CE1 C Y N 206 HIS NE2 N Y N 207 HIS OXT O N N 208 HIS H H N N 209 HIS H2 H N N 210 HIS HA H N N 211 HIS HB2 H N N 212 HIS HB3 H N N 213 HIS HD1 H N N 214 HIS HD2 H N N 215 HIS HE1 H N N 216 HIS HE2 H N N 217 HIS HXT H N N 218 ILE N N N N 219 ILE CA C N S 220 ILE C C N N 221 ILE O O N N 222 ILE CB C N S 223 ILE CG1 C N N 224 ILE CG2 C N N 225 ILE CD1 C N N 226 ILE OXT O N N 227 ILE H H N N 228 ILE H2 H N N 229 ILE HA H N N 230 ILE HB H N N 231 ILE HG12 H N N 232 ILE HG13 H N N 233 ILE HG21 H N N 234 ILE HG22 H N N 235 ILE HG23 H N N 236 ILE HD11 H N N 237 ILE HD12 H N N 238 ILE HD13 H N N 239 ILE HXT H N N 240 LEU N N N N 241 LEU CA C N S 242 LEU C C N N 243 LEU O O N N 244 LEU CB C N N 245 LEU CG C N N 246 LEU CD1 C N N 247 LEU CD2 C N N 248 LEU OXT O N N 249 LEU H H N N 250 LEU H2 H N N 251 LEU HA H N N 252 LEU HB2 H N N 253 LEU HB3 H N N 254 LEU HG H N N 255 LEU HD11 H N N 256 LEU HD12 H N N 257 LEU HD13 H N N 258 LEU HD21 H N N 259 LEU HD22 H N N 260 LEU HD23 H N N 261 LEU HXT H N N 262 LYS N N N N 263 LYS CA C N S 264 LYS C C N N 265 LYS O O N N 266 LYS CB C N N 267 LYS CG C N N 268 LYS CD C N N 269 LYS CE C N N 270 LYS NZ N N N 271 LYS OXT O N N 272 LYS H H N N 273 LYS H2 H N N 274 LYS HA H N N 275 LYS HB2 H N N 276 LYS HB3 H N N 277 LYS HG2 H N N 278 LYS HG3 H N N 279 LYS HD2 H N N 280 LYS HD3 H N N 281 LYS HE2 H N N 282 LYS HE3 H N N 283 LYS HZ1 H N N 284 LYS HZ2 H N N 285 LYS HZ3 H N N 286 LYS HXT H N N 287 PHE N N N N 288 PHE CA C N S 289 PHE C C N N 290 PHE O O N N 291 PHE CB C N N 292 PHE CG C Y N 293 PHE CD1 C Y N 294 PHE CD2 C Y N 295 PHE CE1 C Y N 296 PHE CE2 C Y N 297 PHE CZ C Y N 298 PHE OXT O N N 299 PHE H H N N 300 PHE H2 H N N 301 PHE HA H N N 302 PHE HB2 H N N 303 PHE HB3 H N N 304 PHE HD1 H N N 305 PHE HD2 H N N 306 PHE HE1 H N N 307 PHE HE2 H N N 308 PHE HZ H N N 309 PHE HXT H N N 310 PRO N N N N 311 PRO CA C N S 312 PRO C C N N 313 PRO O O N N 314 PRO CB C N N 315 PRO CG C N N 316 PRO CD C N N 317 PRO OXT O N N 318 PRO H H N N 319 PRO HA H N N 320 PRO HB2 H N N 321 PRO HB3 H N N 322 PRO HG2 H N N 323 PRO HG3 H N N 324 PRO HD2 H N N 325 PRO HD3 H N N 326 PRO HXT H N N 327 SER N N N N 328 SER CA C N S 329 SER C C N N 330 SER O O N N 331 SER CB C N N 332 SER OG O N N 333 SER OXT O N N 334 SER H H N N 335 SER H2 H N N 336 SER HA H N N 337 SER HB2 H N N 338 SER HB3 H N N 339 SER HG H N N 340 SER HXT H N N 341 THR N N N N 342 THR CA C N S 343 THR C C N N 344 THR O O N N 345 THR CB C N R 346 THR OG1 O N N 347 THR CG2 C N N 348 THR OXT O N N 349 THR H H N N 350 THR H2 H N N 351 THR HA H N N 352 THR HB H N N 353 THR HG1 H N N 354 THR HG21 H N N 355 THR HG22 H N N 356 THR HG23 H N N 357 THR HXT H N N 358 TRP N N N N 359 TRP CA C N S 360 TRP C C N N 361 TRP O O N N 362 TRP CB C N N 363 TRP CG C Y N 364 TRP CD1 C Y N 365 TRP CD2 C Y N 366 TRP NE1 N Y N 367 TRP CE2 C Y N 368 TRP CE3 C Y N 369 TRP CZ2 C Y N 370 TRP CZ3 C Y N 371 TRP CH2 C Y N 372 TRP OXT O N N 373 TRP H H N N 374 TRP H2 H N N 375 TRP HA H N N 376 TRP HB2 H N N 377 TRP HB3 H N N 378 TRP HD1 H N N 379 TRP HE1 H N N 380 TRP HE3 H N N 381 TRP HZ2 H N N 382 TRP HZ3 H N N 383 TRP HH2 H N N 384 TRP HXT H N N 385 TYR N N N N 386 TYR CA C N S 387 TYR C C N N 388 TYR O O N N 389 TYR CB C N N 390 TYR CG C Y N 391 TYR CD1 C Y N 392 TYR CD2 C Y N 393 TYR CE1 C Y N 394 TYR CE2 C Y N 395 TYR CZ C Y N 396 TYR OH O N N 397 TYR OXT O N N 398 TYR H H N N 399 TYR H2 H N N 400 TYR HA H N N 401 TYR HB2 H N N 402 TYR HB3 H N N 403 TYR HD1 H N N 404 TYR HD2 H N N 405 TYR HE1 H N N 406 TYR HE2 H N N 407 TYR HH H N N 408 TYR HXT H N N 409 VAL N N N N 410 VAL CA C N S 411 VAL C C N N 412 VAL O O N N 413 VAL CB C N N 414 VAL CG1 C N N 415 VAL CG2 C N N 416 VAL OXT O N N 417 VAL H H N N 418 VAL H2 H N N 419 VAL HA H N N 420 VAL HB H N N 421 VAL HG11 H N N 422 VAL HG12 H N N 423 VAL HG13 H N N 424 VAL HG21 H N N 425 VAL HG22 H N N 426 VAL HG23 H N N 427 VAL HXT H N N 428 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 G OP3 P sing N N 109 G OP3 HOP3 sing N N 110 G P OP1 doub N N 111 G P OP2 sing N N 112 G P "O5'" sing N N 113 G OP2 HOP2 sing N N 114 G "O5'" "C5'" sing N N 115 G "C5'" "C4'" sing N N 116 G "C5'" "H5'" sing N N 117 G "C5'" "H5''" sing N N 118 G "C4'" "O4'" sing N N 119 G "C4'" "C3'" sing N N 120 G "C4'" "H4'" sing N N 121 G "O4'" "C1'" sing N N 122 G "C3'" "O3'" sing N N 123 G "C3'" "C2'" sing N N 124 G "C3'" "H3'" sing N N 125 G "O3'" "HO3'" sing N N 126 G "C2'" "O2'" sing N N 127 G "C2'" "C1'" sing N N 128 G "C2'" "H2'" sing N N 129 G "O2'" "HO2'" sing N N 130 G "C1'" N9 sing N N 131 G "C1'" "H1'" sing N N 132 G N9 C8 sing Y N 133 G N9 C4 sing Y N 134 G C8 N7 doub Y N 135 G C8 H8 sing N N 136 G N7 C5 sing Y N 137 G C5 C6 sing N N 138 G C5 C4 doub Y N 139 G C6 O6 doub N N 140 G C6 N1 sing N N 141 G N1 C2 sing N N 142 G N1 H1 sing N N 143 G C2 N2 sing N N 144 G C2 N3 doub N N 145 G N2 H21 sing N N 146 G N2 H22 sing N N 147 G N3 C4 sing N N 148 GLN N CA sing N N 149 GLN N H sing N N 150 GLN N H2 sing N N 151 GLN CA C sing N N 152 GLN CA CB sing N N 153 GLN CA HA sing N N 154 GLN C O doub N N 155 GLN C OXT sing N N 156 GLN CB CG sing N N 157 GLN CB HB2 sing N N 158 GLN CB HB3 sing N N 159 GLN CG CD sing N N 160 GLN CG HG2 sing N N 161 GLN CG HG3 sing N N 162 GLN CD OE1 doub N N 163 GLN CD NE2 sing N N 164 GLN NE2 HE21 sing N N 165 GLN NE2 HE22 sing N N 166 GLN OXT HXT sing N N 167 GLU N CA sing N N 168 GLU N H sing N N 169 GLU N H2 sing N N 170 GLU CA C sing N N 171 GLU CA CB sing N N 172 GLU CA HA sing N N 173 GLU C O doub N N 174 GLU C OXT sing N N 175 GLU CB CG sing N N 176 GLU CB HB2 sing N N 177 GLU CB HB3 sing N N 178 GLU CG CD sing N N 179 GLU CG HG2 sing N N 180 GLU CG HG3 sing N N 181 GLU CD OE1 doub N N 182 GLU CD OE2 sing N N 183 GLU OE2 HE2 sing N N 184 GLU OXT HXT sing N N 185 GLY N CA sing N N 186 GLY N H sing N N 187 GLY N H2 sing N N 188 GLY CA C sing N N 189 GLY CA HA2 sing N N 190 GLY CA HA3 sing N N 191 GLY C O doub N N 192 GLY C OXT sing N N 193 GLY OXT HXT sing N N 194 HIS N CA sing N N 195 HIS N H sing N N 196 HIS N H2 sing N N 197 HIS CA C sing N N 198 HIS CA CB sing N N 199 HIS CA HA sing N N 200 HIS C O doub N N 201 HIS C OXT sing N N 202 HIS CB CG sing N N 203 HIS CB HB2 sing N N 204 HIS CB HB3 sing N N 205 HIS CG ND1 sing Y N 206 HIS CG CD2 doub Y N 207 HIS ND1 CE1 doub Y N 208 HIS ND1 HD1 sing N N 209 HIS CD2 NE2 sing Y N 210 HIS CD2 HD2 sing N N 211 HIS CE1 NE2 sing Y N 212 HIS CE1 HE1 sing N N 213 HIS NE2 HE2 sing N N 214 HIS OXT HXT sing N N 215 ILE N CA sing N N 216 ILE N H sing N N 217 ILE N H2 sing N N 218 ILE CA C sing N N 219 ILE CA CB sing N N 220 ILE CA HA sing N N 221 ILE C O doub N N 222 ILE C OXT sing N N 223 ILE CB CG1 sing N N 224 ILE CB CG2 sing N N 225 ILE CB HB sing N N 226 ILE CG1 CD1 sing N N 227 ILE CG1 HG12 sing N N 228 ILE CG1 HG13 sing N N 229 ILE CG2 HG21 sing N N 230 ILE CG2 HG22 sing N N 231 ILE CG2 HG23 sing N N 232 ILE CD1 HD11 sing N N 233 ILE CD1 HD12 sing N N 234 ILE CD1 HD13 sing N N 235 ILE OXT HXT sing N N 236 LEU N CA sing N N 237 LEU N H sing N N 238 LEU N H2 sing N N 239 LEU CA C sing N N 240 LEU CA CB sing N N 241 LEU CA HA sing N N 242 LEU C O doub N N 243 LEU C OXT sing N N 244 LEU CB CG sing N N 245 LEU CB HB2 sing N N 246 LEU CB HB3 sing N N 247 LEU CG CD1 sing N N 248 LEU CG CD2 sing N N 249 LEU CG HG sing N N 250 LEU CD1 HD11 sing N N 251 LEU CD1 HD12 sing N N 252 LEU CD1 HD13 sing N N 253 LEU CD2 HD21 sing N N 254 LEU CD2 HD22 sing N N 255 LEU CD2 HD23 sing N N 256 LEU OXT HXT sing N N 257 LYS N CA sing N N 258 LYS N H sing N N 259 LYS N H2 sing N N 260 LYS CA C sing N N 261 LYS CA CB sing N N 262 LYS CA HA sing N N 263 LYS C O doub N N 264 LYS C OXT sing N N 265 LYS CB CG sing N N 266 LYS CB HB2 sing N N 267 LYS CB HB3 sing N N 268 LYS CG CD sing N N 269 LYS CG HG2 sing N N 270 LYS CG HG3 sing N N 271 LYS CD CE sing N N 272 LYS CD HD2 sing N N 273 LYS CD HD3 sing N N 274 LYS CE NZ sing N N 275 LYS CE HE2 sing N N 276 LYS CE HE3 sing N N 277 LYS NZ HZ1 sing N N 278 LYS NZ HZ2 sing N N 279 LYS NZ HZ3 sing N N 280 LYS OXT HXT sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PRO N CA sing N N 305 PRO N CD sing N N 306 PRO N H sing N N 307 PRO CA C sing N N 308 PRO CA CB sing N N 309 PRO CA HA sing N N 310 PRO C O doub N N 311 PRO C OXT sing N N 312 PRO CB CG sing N N 313 PRO CB HB2 sing N N 314 PRO CB HB3 sing N N 315 PRO CG CD sing N N 316 PRO CG HG2 sing N N 317 PRO CG HG3 sing N N 318 PRO CD HD2 sing N N 319 PRO CD HD3 sing N N 320 PRO OXT HXT sing N N 321 SER N CA sing N N 322 SER N H sing N N 323 SER N H2 sing N N 324 SER CA C sing N N 325 SER CA CB sing N N 326 SER CA HA sing N N 327 SER C O doub N N 328 SER C OXT sing N N 329 SER CB OG sing N N 330 SER CB HB2 sing N N 331 SER CB HB3 sing N N 332 SER OG HG sing N N 333 SER OXT HXT sing N N 334 THR N CA sing N N 335 THR N H sing N N 336 THR N H2 sing N N 337 THR CA C sing N N 338 THR CA CB sing N N 339 THR CA HA sing N N 340 THR C O doub N N 341 THR C OXT sing N N 342 THR CB OG1 sing N N 343 THR CB CG2 sing N N 344 THR CB HB sing N N 345 THR OG1 HG1 sing N N 346 THR CG2 HG21 sing N N 347 THR CG2 HG22 sing N N 348 THR CG2 HG23 sing N N 349 THR OXT HXT sing N N 350 TRP N CA sing N N 351 TRP N H sing N N 352 TRP N H2 sing N N 353 TRP CA C sing N N 354 TRP CA CB sing N N 355 TRP CA HA sing N N 356 TRP C O doub N N 357 TRP C OXT sing N N 358 TRP CB CG sing N N 359 TRP CB HB2 sing N N 360 TRP CB HB3 sing N N 361 TRP CG CD1 doub Y N 362 TRP CG CD2 sing Y N 363 TRP CD1 NE1 sing Y N 364 TRP CD1 HD1 sing N N 365 TRP CD2 CE2 doub Y N 366 TRP CD2 CE3 sing Y N 367 TRP NE1 CE2 sing Y N 368 TRP NE1 HE1 sing N N 369 TRP CE2 CZ2 sing Y N 370 TRP CE3 CZ3 doub Y N 371 TRP CE3 HE3 sing N N 372 TRP CZ2 CH2 doub Y N 373 TRP CZ2 HZ2 sing N N 374 TRP CZ3 CH2 sing Y N 375 TRP CZ3 HZ3 sing N N 376 TRP CH2 HH2 sing N N 377 TRP OXT HXT sing N N 378 TYR N CA sing N N 379 TYR N H sing N N 380 TYR N H2 sing N N 381 TYR CA C sing N N 382 TYR CA CB sing N N 383 TYR CA HA sing N N 384 TYR C O doub N N 385 TYR C OXT sing N N 386 TYR CB CG sing N N 387 TYR CB HB2 sing N N 388 TYR CB HB3 sing N N 389 TYR CG CD1 doub Y N 390 TYR CG CD2 sing Y N 391 TYR CD1 CE1 sing Y N 392 TYR CD1 HD1 sing N N 393 TYR CD2 CE2 doub Y N 394 TYR CD2 HD2 sing N N 395 TYR CE1 CZ doub Y N 396 TYR CE1 HE1 sing N N 397 TYR CE2 CZ sing Y N 398 TYR CE2 HE2 sing N N 399 TYR CZ OH sing N N 400 TYR OH HH sing N N 401 TYR OXT HXT sing N N 402 VAL N CA sing N N 403 VAL N H sing N N 404 VAL N H2 sing N N 405 VAL CA C sing N N 406 VAL CA CB sing N N 407 VAL CA HA sing N N 408 VAL C O doub N N 409 VAL C OXT sing N N 410 VAL CB CG1 sing N N 411 VAL CB CG2 sing N N 412 VAL CB HB sing N N 413 VAL CG1 HG11 sing N N 414 VAL CG1 HG12 sing N N 415 VAL CG1 HG13 sing N N 416 VAL CG2 HG21 sing N N 417 VAL CG2 HG22 sing N N 418 VAL CG2 HG23 sing N N 419 VAL OXT HXT sing N N 420 # _atom_sites.entry_id 3PDM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_