HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 23-OCT-10 3PDQ TITLE CRYSTAL STRUCTURE OF JMJD2A COMPLEXED WITH BIPYRIDYL INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 4A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1-359; COMPND 5 SYNONYM: JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3A, COMPND 6 JUMONJI DOMAIN-CONTAINING PROTEIN 2A; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KDM4A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS JMJC DOMAIN, OXIDOREDUCTASE, CHROMATIN REGULATOR, DIOXYGENASE, KEYWDS 2 TRANSCRIPTION, IRON, 2-OXOGLUTARATE, ALPHA-KETOGLUTARATE, KEYWDS 3 DEMETHYLATION, NUCLEUS, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR KEYWDS 4 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.N.F.KING,K.-H.CHANG,N.R.ROSE,I.J.CLIFTON,M.A.MCDONOUGH, AUTHOR 2 C.J.SCHOFIELD REVDAT 3 01-NOV-23 3PDQ 1 REMARK SEQADV LINK REVDAT 2 26-MAR-14 3PDQ 1 JRNL VERSN REVDAT 1 30-MAR-11 3PDQ 0 JRNL AUTH K.-H.CHANG,O.N.F.KING,A.TUMBER,E.C.WOON,T.D.HEIGHTMAN, JRNL AUTH 2 M.A.MCDONOUGH,C.J.SCHOFIELD,N.R.ROSE JRNL TITL INHIBITION OF HISTONE DEMETHYLASES BY JRNL TITL 2 4-CARBOXY-2,2'-BIPYRIDYL COMPOUNDS JRNL REF CHEMMEDCHEM V. 6 759 2011 JRNL REFN ISSN 1860-7179 JRNL PMID 21412984 JRNL DOI 10.1002/CMDC.201100026 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6_289 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 58409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4812 - 5.4844 0.99 2929 140 0.1598 0.1739 REMARK 3 2 5.4844 - 4.3543 1.00 2781 160 0.1244 0.1520 REMARK 3 3 4.3543 - 3.8042 1.00 2770 140 0.1372 0.1646 REMARK 3 4 3.8042 - 3.4565 1.00 2757 141 0.1541 0.1870 REMARK 3 5 3.4565 - 3.2088 1.00 2710 145 0.1635 0.2107 REMARK 3 6 3.2088 - 3.0197 0.99 2731 137 0.1701 0.1904 REMARK 3 7 3.0197 - 2.8685 0.99 2698 130 0.1803 0.2481 REMARK 3 8 2.8685 - 2.7436 0.99 2686 154 0.1761 0.2263 REMARK 3 9 2.7436 - 2.6380 0.99 2695 146 0.1733 0.2128 REMARK 3 10 2.6380 - 2.5470 0.98 2646 155 0.1729 0.2259 REMARK 3 11 2.5470 - 2.4674 0.98 2648 137 0.1683 0.2022 REMARK 3 12 2.4674 - 2.3968 0.97 2637 126 0.1635 0.2170 REMARK 3 13 2.3968 - 2.3337 0.97 2636 157 0.1657 0.2134 REMARK 3 14 2.3337 - 2.2768 0.97 2585 131 0.1662 0.2101 REMARK 3 15 2.2768 - 2.2250 0.96 2570 138 0.1723 0.2351 REMARK 3 16 2.2250 - 2.1777 0.95 2589 136 0.1845 0.2443 REMARK 3 17 2.1777 - 2.1341 0.95 2571 131 0.1982 0.2666 REMARK 3 18 2.1341 - 2.0939 0.93 2490 134 0.2018 0.2794 REMARK 3 19 2.0939 - 2.0565 0.92 2447 149 0.2061 0.2455 REMARK 3 20 2.0565 - 2.0216 0.91 2499 132 0.2146 0.2729 REMARK 3 21 2.0216 - 1.9890 0.89 2384 131 0.2282 0.2835 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 39.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.41430 REMARK 3 B22 (A**2) : 0.18130 REMARK 3 B33 (A**2) : 1.23310 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5989 REMARK 3 ANGLE : 1.087 8148 REMARK 3 CHIRALITY : 0.076 839 REMARK 3 PLANARITY : 0.007 1052 REMARK 3 DIHEDRAL : 15.509 2166 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:29) REMARK 3 ORIGIN FOR THE GROUP (A): -44.4841 -28.2049 -31.2909 REMARK 3 T TENSOR REMARK 3 T11: 0.3841 T22: 0.4613 REMARK 3 T33: 0.4043 T12: 0.1140 REMARK 3 T13: -0.1803 T23: -0.0851 REMARK 3 L TENSOR REMARK 3 L11: 0.7892 L22: 1.6605 REMARK 3 L33: 1.6811 L12: -0.6445 REMARK 3 L13: 0.6743 L23: -0.6415 REMARK 3 S TENSOR REMARK 3 S11: 0.3962 S12: 0.4945 S13: -0.5857 REMARK 3 S21: -0.3398 S22: -0.0383 S23: 1.2485 REMARK 3 S31: 0.3889 S32: -0.6164 S33: -0.0217 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 30:61) REMARK 3 ORIGIN FOR THE GROUP (A): -36.9310 -23.6296 -34.7298 REMARK 3 T TENSOR REMARK 3 T11: 0.3332 T22: 0.4519 REMARK 3 T33: 0.1497 T12: 0.1680 REMARK 3 T13: -0.0987 T23: -0.0724 REMARK 3 L TENSOR REMARK 3 L11: 1.0550 L22: 1.6320 REMARK 3 L33: 0.7075 L12: -0.9700 REMARK 3 L13: 0.6545 L23: -0.1034 REMARK 3 S TENSOR REMARK 3 S11: 0.4823 S12: 0.7332 S13: -0.3158 REMARK 3 S21: -0.4805 S22: -0.4789 S23: 0.3374 REMARK 3 S31: 0.2909 S32: 0.1171 S33: -0.2623 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 62:123) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1935 -25.2443 -25.2406 REMARK 3 T TENSOR REMARK 3 T11: 0.1299 T22: 0.3722 REMARK 3 T33: 0.1664 T12: 0.1343 REMARK 3 T13: 0.1519 T23: 0.1248 REMARK 3 L TENSOR REMARK 3 L11: 2.0512 L22: 2.3090 REMARK 3 L33: 1.0063 L12: -0.3345 REMARK 3 L13: 0.8041 L23: -0.5174 REMARK 3 S TENSOR REMARK 3 S11: 0.2969 S12: 0.5838 S13: 0.0205 REMARK 3 S21: -0.1662 S22: -0.4724 S23: -0.5794 REMARK 3 S31: 0.1342 S32: 0.4639 S33: 0.2447 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 124:213) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2309 -17.7417 -26.1745 REMARK 3 T TENSOR REMARK 3 T11: 0.1684 T22: 0.2620 REMARK 3 T33: 0.1196 T12: 0.0568 REMARK 3 T13: 0.0375 T23: 0.0511 REMARK 3 L TENSOR REMARK 3 L11: 1.9882 L22: 1.0944 REMARK 3 L33: 0.2672 L12: -0.8584 REMARK 3 L13: 0.6843 L23: -0.2931 REMARK 3 S TENSOR REMARK 3 S11: 0.2142 S12: 0.3719 S13: 0.1946 REMARK 3 S21: -0.2163 S22: -0.2916 S23: -0.0229 REMARK 3 S31: 0.0349 S32: 0.1745 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 214:225) REMARK 3 ORIGIN FOR THE GROUP (A): -34.2279 -32.0318 -7.2934 REMARK 3 T TENSOR REMARK 3 T11: 0.2745 T22: 0.1724 REMARK 3 T33: 0.2739 T12: -0.0062 REMARK 3 T13: 0.0748 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 0.0552 L22: 0.0246 REMARK 3 L33: 0.0979 L12: 0.0459 REMARK 3 L13: -0.0801 L23: -0.0799 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: -0.2905 S13: -0.2770 REMARK 3 S21: 0.3102 S22: 0.0418 S23: 0.3735 REMARK 3 S31: -0.0841 S32: -0.2196 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 226:239) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8968 -23.7536 -3.6509 REMARK 3 T TENSOR REMARK 3 T11: 0.2498 T22: 0.2739 REMARK 3 T33: 0.1498 T12: -0.0355 REMARK 3 T13: 0.0013 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.3427 L22: 0.1865 REMARK 3 L33: 0.1778 L12: -0.0112 REMARK 3 L13: 0.0376 L23: -0.0679 REMARK 3 S TENSOR REMARK 3 S11: -0.1298 S12: -0.4154 S13: 0.1675 REMARK 3 S21: 0.3313 S22: -0.1449 S23: -0.1410 REMARK 3 S31: -0.3499 S32: -0.0473 S33: -0.0030 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 240:254) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8813 -33.6530 -12.1800 REMARK 3 T TENSOR REMARK 3 T11: 0.1591 T22: 0.1643 REMARK 3 T33: 0.1800 T12: -0.0151 REMARK 3 T13: 0.0379 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 0.1347 L22: 0.0556 REMARK 3 L33: -0.0364 L12: -0.0223 REMARK 3 L13: 0.0346 L23: 0.0190 REMARK 3 S TENSOR REMARK 3 S11: 0.0919 S12: -0.0795 S13: 0.0139 REMARK 3 S21: -0.0070 S22: -0.0928 S23: -0.1776 REMARK 3 S31: 0.0197 S32: 0.0523 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 255:309) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8697 -22.7978 -21.2049 REMARK 3 T TENSOR REMARK 3 T11: 0.1569 T22: 0.2049 REMARK 3 T33: 0.1330 T12: 0.0178 REMARK 3 T13: -0.0069 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.4939 L22: 1.0019 REMARK 3 L33: 0.2569 L12: -0.9443 REMARK 3 L13: 0.6649 L23: -0.7064 REMARK 3 S TENSOR REMARK 3 S11: 0.1781 S12: 0.2153 S13: -0.0227 REMARK 3 S21: -0.1501 S22: -0.2073 S23: 0.2281 REMARK 3 S31: 0.0719 S32: 0.0917 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 310:355) REMARK 3 ORIGIN FOR THE GROUP (A): -47.9829 -14.1732 -13.6388 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.1173 REMARK 3 T33: 0.2228 T12: 0.0275 REMARK 3 T13: -0.0036 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 0.6697 L22: 0.9089 REMARK 3 L33: 1.2109 L12: -0.9576 REMARK 3 L13: -0.4477 L23: -0.1507 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.0390 S13: -0.1139 REMARK 3 S21: 0.1376 S22: -0.0262 S23: 0.3256 REMARK 3 S31: -0.0859 S32: -0.2615 S33: 0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 7:54) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7508 -52.1435 -8.2380 REMARK 3 T TENSOR REMARK 3 T11: 0.3030 T22: 0.1630 REMARK 3 T33: 0.2768 T12: 0.0193 REMARK 3 T13: 0.0872 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.9014 L22: 0.6805 REMARK 3 L33: 0.2889 L12: 0.0810 REMARK 3 L13: -0.2339 L23: -0.4584 REMARK 3 S TENSOR REMARK 3 S11: 0.0799 S12: 0.1494 S13: 0.3593 REMARK 3 S21: -0.2891 S22: -0.0857 S23: -0.5271 REMARK 3 S31: 0.1883 S32: 0.1945 S33: 0.0011 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 55:72) REMARK 3 ORIGIN FOR THE GROUP (A): -51.7276 -64.4131 -8.6820 REMARK 3 T TENSOR REMARK 3 T11: 0.5176 T22: 0.3875 REMARK 3 T33: 0.1789 T12: -0.2660 REMARK 3 T13: -0.1969 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.1079 L22: 1.4537 REMARK 3 L33: 0.3462 L12: -0.0067 REMARK 3 L13: 0.0194 L23: -0.4678 REMARK 3 S TENSOR REMARK 3 S11: -0.1388 S12: 0.4057 S13: 0.0602 REMARK 3 S21: -0.3578 S22: 0.2619 S23: 0.4288 REMARK 3 S31: 0.5226 S32: -0.7041 S33: 0.3177 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 73:91) REMARK 3 ORIGIN FOR THE GROUP (A): -54.4898 -50.8737 10.9058 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.2676 REMARK 3 T33: 0.2443 T12: -0.0648 REMARK 3 T13: -0.0628 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 0.3237 L22: 0.0148 REMARK 3 L33: 0.1287 L12: 0.0033 REMARK 3 L13: -0.2296 L23: -0.0062 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.0159 S13: 0.0939 REMARK 3 S21: 0.1417 S22: 0.1070 S23: 0.2924 REMARK 3 S31: 0.1749 S32: -0.0778 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 92:117) REMARK 3 ORIGIN FOR THE GROUP (A): -56.9181 -49.9531 -6.8152 REMARK 3 T TENSOR REMARK 3 T11: 0.3425 T22: 0.5128 REMARK 3 T33: 0.2848 T12: -0.1754 REMARK 3 T13: -0.1988 T23: 0.1834 REMARK 3 L TENSOR REMARK 3 L11: 0.8923 L22: 0.2743 REMARK 3 L33: 0.9374 L12: -0.3126 REMARK 3 L13: -0.7487 L23: 0.4787 REMARK 3 S TENSOR REMARK 3 S11: -0.0688 S12: 0.3421 S13: 0.1163 REMARK 3 S21: -0.6959 S22: 0.2422 S23: 0.3858 REMARK 3 S31: 0.1087 S32: -0.6751 S33: 0.0731 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 118:213) REMARK 3 ORIGIN FOR THE GROUP (A): -41.7182 -57.9188 -0.3936 REMARK 3 T TENSOR REMARK 3 T11: 0.2647 T22: 0.1127 REMARK 3 T33: 0.1690 T12: -0.0586 REMARK 3 T13: -0.0838 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.9862 L22: 0.6116 REMARK 3 L33: 1.0675 L12: -0.0138 REMARK 3 L13: -0.1966 L23: -0.1295 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: 0.0051 S13: -0.0244 REMARK 3 S21: -0.2221 S22: 0.1428 S23: -0.0862 REMARK 3 S31: 0.3102 S32: -0.1897 S33: 0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 214:240) REMARK 3 ORIGIN FOR THE GROUP (A): -38.3220 -47.9641 18.6962 REMARK 3 T TENSOR REMARK 3 T11: 0.2062 T22: 0.2735 REMARK 3 T33: 0.2174 T12: -0.0041 REMARK 3 T13: -0.0672 T23: -0.0612 REMARK 3 L TENSOR REMARK 3 L11: 0.1116 L22: 0.5066 REMARK 3 L33: 0.4092 L12: -0.2679 REMARK 3 L13: -0.0904 L23: 0.1563 REMARK 3 S TENSOR REMARK 3 S11: -0.1094 S12: -0.5151 S13: 0.0954 REMARK 3 S21: 0.0312 S22: 0.0523 S23: -0.1622 REMARK 3 S31: -0.0916 S32: 0.1295 S33: 0.0001 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 241:253) REMARK 3 ORIGIN FOR THE GROUP (A): -43.1698 -40.8873 11.3147 REMARK 3 T TENSOR REMARK 3 T11: 0.1939 T22: 0.1631 REMARK 3 T33: 0.2700 T12: -0.0400 REMARK 3 T13: -0.0324 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.2736 L22: 0.0680 REMARK 3 L33: 0.2051 L12: -0.0017 REMARK 3 L13: -0.0792 L23: -0.0721 REMARK 3 S TENSOR REMARK 3 S11: 0.1271 S12: -0.0989 S13: 0.0216 REMARK 3 S21: -0.0252 S22: 0.2087 S23: 0.0614 REMARK 3 S31: -0.1109 S32: -0.2069 S33: 0.0022 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN B AND RESID 254:311) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3913 -54.2940 3.9668 REMARK 3 T TENSOR REMARK 3 T11: 0.1805 T22: 0.0830 REMARK 3 T33: 0.1656 T12: -0.0428 REMARK 3 T13: -0.0452 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.9738 L22: 0.5803 REMARK 3 L33: 0.7233 L12: -0.6081 REMARK 3 L13: -0.2744 L23: -0.3295 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: -0.1208 S13: -0.0200 REMARK 3 S21: -0.1404 S22: 0.0706 S23: -0.1112 REMARK 3 S31: 0.1074 S32: -0.0408 S33: 0.0000 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN B AND RESID 312:338) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8820 -66.7306 15.9742 REMARK 3 T TENSOR REMARK 3 T11: 0.2631 T22: 0.2206 REMARK 3 T33: 0.3849 T12: 0.0540 REMARK 3 T13: -0.0027 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 0.0952 L22: 0.2260 REMARK 3 L33: 0.3825 L12: -0.2870 REMARK 3 L13: 0.0709 L23: -0.1460 REMARK 3 S TENSOR REMARK 3 S11: 0.1186 S12: -0.2328 S13: -0.2531 REMARK 3 S21: 0.0221 S22: 0.0298 S23: -0.0221 REMARK 3 S31: -0.0584 S32: -0.0213 S33: 0.0002 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN B AND RESID 339:354) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5128 -53.5277 3.6492 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: 0.3117 REMARK 3 T33: 0.5538 T12: 0.0446 REMARK 3 T13: 0.0255 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.1275 L22: 0.0499 REMARK 3 L33: 0.0627 L12: -0.1500 REMARK 3 L13: 0.0538 L23: -0.0213 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: -0.1209 S13: 0.0994 REMARK 3 S21: 0.0230 S22: -0.1673 S23: -0.6091 REMARK 3 S31: -0.0192 S32: 0.4487 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60331 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.989 REMARK 200 RESOLUTION RANGE LOW (A) : 83.549 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : 0.59900 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2OX0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRATE, 4MM NICL2, 17.5% PEG REMARK 280 3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.38500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.38500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 356 REMARK 465 SER A 357 REMARK 465 GLU A 358 REMARK 465 LEU A 359 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLU B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 LYS B 355 REMARK 465 GLU B 356 REMARK 465 SER B 357 REMARK 465 GLU B 358 REMARK 465 LEU B 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 ARG A 95 CD NE CZ NH1 NH2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ARG A 110 CD NE CZ NH1 NH2 REMARK 470 GLU A 113 CD OE1 OE2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 ARG A 154 NE CZ NH1 NH2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 ASP A 311 CG OD1 OD2 REMARK 470 LYS A 330 CD CE NZ REMARK 470 LYS A 336 CE NZ REMARK 470 LYS A 355 CG CD CE NZ REMARK 470 THR B 7 OG1 CG2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 LYS B 99 CE NZ REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 LYS B 143 CD CE NZ REMARK 470 ARG B 154 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 GLU B 163 CD OE1 OE2 REMARK 470 GLN B 232 CD OE1 NE2 REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 ASP B 311 CG OD1 OD2 REMARK 470 LYS B 336 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 112 -70.78 -94.11 REMARK 500 ARG A 152 69.18 -159.97 REMARK 500 MET A 192 19.70 53.40 REMARK 500 ALA A 236 54.23 -157.83 REMARK 500 ARG B 152 68.07 -158.27 REMARK 500 MET B 192 19.84 53.68 REMARK 500 ALA B 236 54.29 -143.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 188 NE2 REMARK 620 2 GLU A 190 OE2 99.7 REMARK 620 3 HIS A 276 NE2 88.1 83.8 REMARK 620 4 KC6 A 503 N19 81.7 93.5 168.9 REMARK 620 5 KC6 A 503 N06 96.9 162.2 103.4 82.3 REMARK 620 6 HOH A 513 O 169.4 89.6 98.0 92.7 73.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 234 SG REMARK 620 2 HIS A 240 NE2 110.2 REMARK 620 3 CYS A 306 SG 115.6 113.6 REMARK 620 4 CYS A 308 SG 112.4 97.1 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 169 OE1 REMARK 620 2 TYR B 175 OH 90.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 188 NE2 REMARK 620 2 GLU B 190 OE2 99.8 REMARK 620 3 HIS B 276 NE2 89.7 90.0 REMARK 620 4 HOH B 458 O 171.4 87.7 94.4 REMARK 620 5 KC6 B 503 N19 81.1 90.7 170.8 94.8 REMARK 620 6 KC6 B 503 N06 98.2 159.2 100.4 73.7 81.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 234 SG REMARK 620 2 HIS B 240 NE2 110.1 REMARK 620 3 CYS B 306 SG 115.1 114.8 REMARK 620 4 CYS B 308 SG 114.9 89.6 109.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KC6 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KC6 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NJY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJD2A COMPLEXED WITH INHIBITOR REMARK 900 RELATED ID: 2WWJ RELATED DB: PDB REMARK 900 STRUCTURE OF JMJD2A COMPLEXED WITH INHIBITOR 10A REMARK 900 RELATED ID: 2VD7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJD2A COMPLEXED WITH INHIBITOR PYRIDINE-2,4- REMARK 900 DICARBOXYLIC ACID REMARK 900 RELATED ID: 2OQ7 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF JMJD2A COMPLEXED WITH NI AND N- REMARK 900 OXALYLGLYCINE REMARK 900 RELATED ID: 2OX0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJD2A COMPLEXED WITH HISTONE H3 PEPTIDE REMARK 900 DIMETHYLATED AT LYS9 DBREF 3PDQ A 1 359 UNP O75164 KDM4A_HUMAN 1 359 DBREF 3PDQ B 1 359 UNP O75164 KDM4A_HUMAN 1 359 SEQADV 3PDQ MET A -21 UNP O75164 EXPRESSION TAG SEQADV 3PDQ HIS A -20 UNP O75164 EXPRESSION TAG SEQADV 3PDQ HIS A -19 UNP O75164 EXPRESSION TAG SEQADV 3PDQ HIS A -18 UNP O75164 EXPRESSION TAG SEQADV 3PDQ HIS A -17 UNP O75164 EXPRESSION TAG SEQADV 3PDQ HIS A -16 UNP O75164 EXPRESSION TAG SEQADV 3PDQ HIS A -15 UNP O75164 EXPRESSION TAG SEQADV 3PDQ SER A -14 UNP O75164 EXPRESSION TAG SEQADV 3PDQ SER A -13 UNP O75164 EXPRESSION TAG SEQADV 3PDQ GLY A -12 UNP O75164 EXPRESSION TAG SEQADV 3PDQ VAL A -11 UNP O75164 EXPRESSION TAG SEQADV 3PDQ ASP A -10 UNP O75164 EXPRESSION TAG SEQADV 3PDQ LEU A -9 UNP O75164 EXPRESSION TAG SEQADV 3PDQ GLY A -8 UNP O75164 EXPRESSION TAG SEQADV 3PDQ THR A -7 UNP O75164 EXPRESSION TAG SEQADV 3PDQ GLU A -6 UNP O75164 EXPRESSION TAG SEQADV 3PDQ ASN A -5 UNP O75164 EXPRESSION TAG SEQADV 3PDQ LEU A -4 UNP O75164 EXPRESSION TAG SEQADV 3PDQ TYR A -3 UNP O75164 EXPRESSION TAG SEQADV 3PDQ PHE A -2 UNP O75164 EXPRESSION TAG SEQADV 3PDQ GLN A -1 UNP O75164 EXPRESSION TAG SEQADV 3PDQ SER A 0 UNP O75164 EXPRESSION TAG SEQADV 3PDQ MET B -21 UNP O75164 EXPRESSION TAG SEQADV 3PDQ HIS B -20 UNP O75164 EXPRESSION TAG SEQADV 3PDQ HIS B -19 UNP O75164 EXPRESSION TAG SEQADV 3PDQ HIS B -18 UNP O75164 EXPRESSION TAG SEQADV 3PDQ HIS B -17 UNP O75164 EXPRESSION TAG SEQADV 3PDQ HIS B -16 UNP O75164 EXPRESSION TAG SEQADV 3PDQ HIS B -15 UNP O75164 EXPRESSION TAG SEQADV 3PDQ SER B -14 UNP O75164 EXPRESSION TAG SEQADV 3PDQ SER B -13 UNP O75164 EXPRESSION TAG SEQADV 3PDQ GLY B -12 UNP O75164 EXPRESSION TAG SEQADV 3PDQ VAL B -11 UNP O75164 EXPRESSION TAG SEQADV 3PDQ ASP B -10 UNP O75164 EXPRESSION TAG SEQADV 3PDQ LEU B -9 UNP O75164 EXPRESSION TAG SEQADV 3PDQ GLY B -8 UNP O75164 EXPRESSION TAG SEQADV 3PDQ THR B -7 UNP O75164 EXPRESSION TAG SEQADV 3PDQ GLU B -6 UNP O75164 EXPRESSION TAG SEQADV 3PDQ ASN B -5 UNP O75164 EXPRESSION TAG SEQADV 3PDQ LEU B -4 UNP O75164 EXPRESSION TAG SEQADV 3PDQ TYR B -3 UNP O75164 EXPRESSION TAG SEQADV 3PDQ PHE B -2 UNP O75164 EXPRESSION TAG SEQADV 3PDQ GLN B -1 UNP O75164 EXPRESSION TAG SEQADV 3PDQ SER B 0 UNP O75164 EXPRESSION TAG SEQRES 1 A 381 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 381 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA SER GLU SEQRES 3 A 381 SER GLU THR LEU ASN PRO SER ALA ARG ILE MET THR PHE SEQRES 4 A 381 TYR PRO THR MET GLU GLU PHE ARG ASN PHE SER ARG TYR SEQRES 5 A 381 ILE ALA TYR ILE GLU SER GLN GLY ALA HIS ARG ALA GLY SEQRES 6 A 381 LEU ALA LYS VAL VAL PRO PRO LYS GLU TRP LYS PRO ARG SEQRES 7 A 381 ALA SER TYR ASP ASP ILE ASP ASP LEU VAL ILE PRO ALA SEQRES 8 A 381 PRO ILE GLN GLN LEU VAL THR GLY GLN SER GLY LEU PHE SEQRES 9 A 381 THR GLN TYR ASN ILE GLN LYS LYS ALA MET THR VAL ARG SEQRES 10 A 381 GLU PHE ARG LYS ILE ALA ASN SER ASP LYS TYR CYS THR SEQRES 11 A 381 PRO ARG TYR SER GLU PHE GLU GLU LEU GLU ARG LYS TYR SEQRES 12 A 381 TRP LYS ASN LEU THR PHE ASN PRO PRO ILE TYR GLY ALA SEQRES 13 A 381 ASP VAL ASN GLY THR LEU TYR GLU LYS HIS VAL ASP GLU SEQRES 14 A 381 TRP ASN ILE GLY ARG LEU ARG THR ILE LEU ASP LEU VAL SEQRES 15 A 381 GLU LYS GLU SER GLY ILE THR ILE GLU GLY VAL ASN THR SEQRES 16 A 381 PRO TYR LEU TYR PHE GLY MET TRP LYS THR SER PHE ALA SEQRES 17 A 381 TRP HIS THR GLU ASP MET ASP LEU TYR SER ILE ASN TYR SEQRES 18 A 381 LEU HIS PHE GLY GLU PRO LYS SER TRP TYR SER VAL PRO SEQRES 19 A 381 PRO GLU HIS GLY LYS ARG LEU GLU ARG LEU ALA LYS GLY SEQRES 20 A 381 PHE PHE PRO GLY SER ALA GLN SER CYS GLU ALA PHE LEU SEQRES 21 A 381 ARG HIS LYS MET THR LEU ILE SER PRO LEU MET LEU LYS SEQRES 22 A 381 LYS TYR GLY ILE PRO PHE ASP LYS VAL THR GLN GLU ALA SEQRES 23 A 381 GLY GLU PHE MET ILE THR PHE PRO TYR GLY TYR HIS ALA SEQRES 24 A 381 GLY PHE ASN HIS GLY PHE ASN CYS ALA GLU SER THR ASN SEQRES 25 A 381 PHE ALA THR ARG ARG TRP ILE GLU TYR GLY LYS GLN ALA SEQRES 26 A 381 VAL LEU CYS SER CYS ARG LYS ASP MET VAL LYS ILE SER SEQRES 27 A 381 MET ASP VAL PHE VAL ARG LYS PHE GLN PRO GLU ARG TYR SEQRES 28 A 381 LYS LEU TRP LYS ALA GLY LYS ASP ASN THR VAL ILE ASP SEQRES 29 A 381 HIS THR LEU PRO THR PRO GLU ALA ALA GLU PHE LEU LYS SEQRES 30 A 381 GLU SER GLU LEU SEQRES 1 B 381 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 381 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA SER GLU SEQRES 3 B 381 SER GLU THR LEU ASN PRO SER ALA ARG ILE MET THR PHE SEQRES 4 B 381 TYR PRO THR MET GLU GLU PHE ARG ASN PHE SER ARG TYR SEQRES 5 B 381 ILE ALA TYR ILE GLU SER GLN GLY ALA HIS ARG ALA GLY SEQRES 6 B 381 LEU ALA LYS VAL VAL PRO PRO LYS GLU TRP LYS PRO ARG SEQRES 7 B 381 ALA SER TYR ASP ASP ILE ASP ASP LEU VAL ILE PRO ALA SEQRES 8 B 381 PRO ILE GLN GLN LEU VAL THR GLY GLN SER GLY LEU PHE SEQRES 9 B 381 THR GLN TYR ASN ILE GLN LYS LYS ALA MET THR VAL ARG SEQRES 10 B 381 GLU PHE ARG LYS ILE ALA ASN SER ASP LYS TYR CYS THR SEQRES 11 B 381 PRO ARG TYR SER GLU PHE GLU GLU LEU GLU ARG LYS TYR SEQRES 12 B 381 TRP LYS ASN LEU THR PHE ASN PRO PRO ILE TYR GLY ALA SEQRES 13 B 381 ASP VAL ASN GLY THR LEU TYR GLU LYS HIS VAL ASP GLU SEQRES 14 B 381 TRP ASN ILE GLY ARG LEU ARG THR ILE LEU ASP LEU VAL SEQRES 15 B 381 GLU LYS GLU SER GLY ILE THR ILE GLU GLY VAL ASN THR SEQRES 16 B 381 PRO TYR LEU TYR PHE GLY MET TRP LYS THR SER PHE ALA SEQRES 17 B 381 TRP HIS THR GLU ASP MET ASP LEU TYR SER ILE ASN TYR SEQRES 18 B 381 LEU HIS PHE GLY GLU PRO LYS SER TRP TYR SER VAL PRO SEQRES 19 B 381 PRO GLU HIS GLY LYS ARG LEU GLU ARG LEU ALA LYS GLY SEQRES 20 B 381 PHE PHE PRO GLY SER ALA GLN SER CYS GLU ALA PHE LEU SEQRES 21 B 381 ARG HIS LYS MET THR LEU ILE SER PRO LEU MET LEU LYS SEQRES 22 B 381 LYS TYR GLY ILE PRO PHE ASP LYS VAL THR GLN GLU ALA SEQRES 23 B 381 GLY GLU PHE MET ILE THR PHE PRO TYR GLY TYR HIS ALA SEQRES 24 B 381 GLY PHE ASN HIS GLY PHE ASN CYS ALA GLU SER THR ASN SEQRES 25 B 381 PHE ALA THR ARG ARG TRP ILE GLU TYR GLY LYS GLN ALA SEQRES 26 B 381 VAL LEU CYS SER CYS ARG LYS ASP MET VAL LYS ILE SER SEQRES 27 B 381 MET ASP VAL PHE VAL ARG LYS PHE GLN PRO GLU ARG TYR SEQRES 28 B 381 LYS LEU TRP LYS ALA GLY LYS ASP ASN THR VAL ILE ASP SEQRES 29 B 381 HIS THR LEU PRO THR PRO GLU ALA ALA GLU PHE LEU LYS SEQRES 30 B 381 GLU SER GLU LEU HET NI A 501 1 HET ZN A 502 1 HET KC6 A 503 21 HET CL A 504 1 HET CL A 505 1 HET CL A 506 1 HET NA A 507 1 HET CL A 360 1 HET NI B 501 1 HET ZN B 502 1 HET KC6 B 503 21 HET CL B 504 1 HET NA B 506 1 HETNAM NI NICKEL (II) ION HETNAM ZN ZINC ION HETNAM KC6 4'-[(2-AMINOETHYL)CARBAMOYL]-2,2'-BIPYRIDINE-4- HETNAM 2 KC6 CARBOXYLIC ACID HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 3 NI 2(NI 2+) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 KC6 2(C14 H14 N4 O3) FORMUL 6 CL 5(CL 1-) FORMUL 9 NA 2(NA 1+) FORMUL 16 HOH *552(H2 O) HELIX 1 1 GLU A 4 LEU A 8 5 5 HELIX 2 2 THR A 20 ARG A 25 1 6 HELIX 3 3 ASN A 26 GLN A 37 1 12 HELIX 4 4 GLY A 38 ALA A 42 5 5 HELIX 5 5 VAL A 94 SER A 103 1 10 HELIX 6 6 GLU A 113 LEU A 125 1 13 HELIX 7 7 THR A 155 LEU A 157 5 3 HELIX 8 8 ASP A 158 GLY A 165 1 8 HELIX 9 9 GLU A 190 LEU A 194 5 5 HELIX 10 10 PRO A 212 GLU A 214 5 3 HELIX 11 11 HIS A 215 PHE A 227 1 13 HELIX 12 12 PHE A 227 CYS A 234 1 8 HELIX 13 13 ALA A 236 LYS A 241 5 6 HELIX 14 14 SER A 246 TYR A 253 1 8 HELIX 15 15 ARG A 295 ALA A 303 1 9 HELIX 16 16 MET A 317 GLN A 325 1 9 HELIX 17 17 GLN A 325 ALA A 334 1 10 HELIX 18 18 THR A 347 GLU A 349 5 3 HELIX 19 19 ALA A 350 LYS A 355 1 6 HELIX 20 20 THR B 20 ARG B 25 1 6 HELIX 21 21 ASN B 26 GLN B 37 1 12 HELIX 22 22 GLY B 38 ALA B 42 5 5 HELIX 23 23 VAL B 94 SER B 103 1 10 HELIX 24 24 GLU B 113 LEU B 125 1 13 HELIX 25 25 THR B 155 LEU B 157 5 3 HELIX 26 26 ASP B 158 GLY B 165 1 8 HELIX 27 27 GLU B 190 LEU B 194 5 5 HELIX 28 28 PRO B 212 GLU B 214 5 3 HELIX 29 29 HIS B 215 PHE B 227 1 13 HELIX 30 30 PHE B 227 CYS B 234 1 8 HELIX 31 31 ALA B 236 LYS B 241 5 6 HELIX 32 32 SER B 246 TYR B 253 1 8 HELIX 33 33 ARG B 295 ALA B 303 1 9 HELIX 34 34 MET B 317 GLN B 325 1 9 HELIX 35 35 GLN B 325 GLY B 335 1 11 HELIX 36 36 THR B 347 LEU B 354 5 8 SHEET 1 A10 MET A 15 PHE A 17 0 SHEET 2 A10 LEU A 44 VAL A 47 1 O LYS A 46 N PHE A 17 SHEET 3 A10 PHE A 267 THR A 270 -1 O ILE A 269 N ALA A 45 SHEET 4 A10 TYR A 195 GLY A 203 -1 N ASN A 198 O MET A 268 SHEET 5 A10 ASN A 284 PHE A 291 -1 O GLU A 287 N TYR A 199 SHEET 6 A10 TYR A 175 GLY A 179 -1 N TYR A 177 O ALA A 286 SHEET 7 A10 ILE A 131 ASN A 137 -1 N GLY A 133 O PHE A 178 SHEET 8 A10 ILE A 71 GLN A 78 -1 N ILE A 71 O TYR A 132 SHEET 9 A10 LEU A 81 GLN A 88 -1 O TYR A 85 N LEU A 74 SHEET 10 A10 THR A 243 ILE A 245 -1 O LEU A 244 N PHE A 82 SHEET 1 B 2 VAL A 66 ILE A 67 0 SHEET 2 B 2 MET A 92 THR A 93 -1 O MET A 92 N ILE A 67 SHEET 1 C 4 SER A 184 HIS A 188 0 SHEET 2 C 4 TYR A 275 ASN A 280 -1 O GLY A 278 N PHE A 185 SHEET 3 C 4 LYS A 206 VAL A 211 -1 N TYR A 209 O ALA A 277 SHEET 4 C 4 ASP A 258 GLN A 262 -1 O VAL A 260 N TRP A 208 SHEET 1 D10 MET B 15 PHE B 17 0 SHEET 2 D10 LEU B 44 VAL B 47 1 O LYS B 46 N MET B 15 SHEET 3 D10 PHE B 267 THR B 270 -1 O ILE B 269 N ALA B 45 SHEET 4 D10 TYR B 195 GLY B 203 -1 N ASN B 198 O MET B 268 SHEET 5 D10 ASN B 284 PHE B 291 -1 O GLU B 287 N TYR B 199 SHEET 6 D10 TYR B 175 GLY B 179 -1 N TYR B 177 O ALA B 286 SHEET 7 D10 ILE B 131 ASN B 137 -1 N GLY B 133 O PHE B 178 SHEET 8 D10 ILE B 71 GLN B 78 -1 N ILE B 71 O TYR B 132 SHEET 9 D10 LEU B 81 GLN B 88 -1 O ILE B 87 N GLN B 72 SHEET 10 D10 THR B 243 ILE B 245 -1 O LEU B 244 N PHE B 82 SHEET 1 E 2 VAL B 66 ILE B 67 0 SHEET 2 E 2 MET B 92 THR B 93 -1 O MET B 92 N ILE B 67 SHEET 1 F 4 SER B 184 HIS B 188 0 SHEET 2 F 4 TYR B 275 ASN B 280 -1 O GLY B 278 N PHE B 185 SHEET 3 F 4 LYS B 206 VAL B 211 -1 N TYR B 209 O ALA B 277 SHEET 4 F 4 ASP B 258 GLN B 262 -1 O GLN B 262 N LYS B 206 LINK OE1 GLU A 169 NA NA A 507 1555 1555 2.91 LINK NE2 HIS A 188 NI NI A 501 1555 1555 2.24 LINK OE2 GLU A 190 NI NI A 501 1555 1555 2.14 LINK SG CYS A 234 ZN ZN A 502 1555 1555 2.27 LINK NE2 HIS A 240 ZN ZN A 502 1555 1555 2.10 LINK NE2 HIS A 276 NI NI A 501 1555 1555 2.13 LINK SG CYS A 306 ZN ZN A 502 1555 1555 2.17 LINK SG CYS A 308 ZN ZN A 502 1555 1555 2.36 LINK NI NI A 501 N19 KC6 A 503 1555 1555 2.10 LINK NI NI A 501 N06 KC6 A 503 1555 1555 2.21 LINK NI NI A 501 O HOH A 513 1555 1555 2.35 LINK OE1 GLU B 169 NA NA B 506 1555 1555 2.99 LINK OH TYR B 175 NA NA B 506 1555 1555 3.12 LINK NE2 HIS B 188 NI NI B 501 1555 1555 2.23 LINK OE2 GLU B 190 NI NI B 501 1555 1555 2.18 LINK SG CYS B 234 ZN ZN B 502 1555 1555 2.25 LINK NE2 HIS B 240 ZN ZN B 502 1555 1555 2.21 LINK NE2 HIS B 276 NI NI B 501 1555 1555 2.25 LINK SG CYS B 306 ZN ZN B 502 1555 1555 2.23 LINK SG CYS B 308 ZN ZN B 502 1555 1555 2.33 LINK O HOH B 458 NI NI B 501 1555 1555 2.22 LINK NI NI B 501 N19 KC6 B 503 1555 1555 2.15 LINK NI NI B 501 N06 KC6 B 503 1555 1555 2.19 SITE 1 AC1 5 HIS A 188 GLU A 190 HIS A 276 KC6 A 503 SITE 2 AC1 5 HOH A 513 SITE 1 AC2 4 CYS A 234 HIS A 240 CYS A 306 CYS A 308 SITE 1 AC3 13 TYR A 132 ASP A 135 TYR A 177 PHE A 185 SITE 2 AC3 13 HIS A 188 GLU A 190 LYS A 206 TRP A 208 SITE 3 AC3 13 LYS A 241 HIS A 276 HOH A 470 NI A 501 SITE 4 AC3 13 HOH A 513 SITE 1 AC4 4 PHE A 227 PRO A 228 GLY A 229 SER A 230 SITE 1 AC5 4 GLN A 84 ASN A 86 LYS A 241 MET A 242 SITE 1 AC6 1 TYR A 18 SITE 1 AC7 2 GLU A 169 TYR A 175 SITE 1 AC8 6 ARG A 239 LEU A 305 CYS A 306 MET A 312 SITE 2 AC8 6 HOH A 388 HOH A 640 SITE 1 AC9 5 HIS B 188 GLU B 190 HIS B 276 HOH B 458 SITE 2 AC9 5 KC6 B 503 SITE 1 BC1 4 CYS B 234 HIS B 240 CYS B 306 CYS B 308 SITE 1 BC2 13 TYR B 132 ASP B 135 TYR B 177 PHE B 185 SITE 2 BC2 13 HIS B 188 GLU B 190 LYS B 206 TRP B 208 SITE 3 BC2 13 LYS B 241 HIS B 276 HOH B 458 NI B 501 SITE 4 BC2 13 HOH B 566 SITE 1 BC3 3 PHE B 227 GLY B 229 SER B 230 SITE 1 BC4 2 GLU B 169 TYR B 175 CRYST1 100.770 149.440 57.300 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009924 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017452 0.00000