HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-OCT-10 3PE5 TITLE THREE-DIMENSIONAL STRUCTURE OF PROTEIN A7VV38_9CLOT FROM CLOSTRIDIUM TITLE 2 LEPTUM DSM 753, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 QLR103 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM LEPTUM; SOURCE 3 ORGANISM_TAXID: 428125; SOURCE 4 STRAIN: DSM 753; SOURCE 5 GENE: CLOLEP_02443; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.KUZIN,M.SU,J.SEETHARAMAN,S.SAHDEV,R.XIAO,C.CICCOSANTI,D.WANG, AUTHOR 2 J.K.EVERETT,R.NAIR,T.B.ACTON,B.ROST,G.T.MONTELIONE,J.F.HUNT,L.TONG, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 2 22-FEB-12 3PE5 1 VERSN KEYWDS REVDAT 1 10-NOV-10 3PE5 0 JRNL AUTH A.KUZIN,M.SU,J.SEETHARAMAN,S.SAHDEV,R.XIAO,C.CICCOSANTI, JRNL AUTH 2 D.WANG,J.K.EVERETT,R.NAIR,T.B.ACTON,B.ROST,G.T.MONTELIONE, JRNL AUTH 3 J.F.HUNT,L.TONG JRNL TITL NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET QLR103 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 28649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 42.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 25.20400 REMARK 3 B22 (A**2) : -15.59200 REMARK 3 B33 (A**2) : -9.61200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -17.89500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: all REMARK 3 ORIGIN FOR THE GROUP (A): -22.1897 35.9299 75.5461 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.1714 REMARK 3 T33: 0.1457 T12: -0.0160 REMARK 3 T13: 0.0282 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.5303 L22: 0.2630 REMARK 3 L33: 0.3980 L12: -0.2648 REMARK 3 L13: 0.5291 L23: -0.2120 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.0165 S13: -0.0129 REMARK 3 S21: 0.0313 S22: 0.0040 S23: 0.0256 REMARK 3 S31: -0.0407 S32: -0.0031 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-10. REMARK 100 THE RCSB ID CODE IS RCSB062267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97903 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52123 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.33700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 100MM NACL, 5MM DTT, REMARK 280 0.02% NAN3, 10MM TRIS-HCL (PH 7.5). RESERVOIR SOLUTION:0.1M REMARK 280 MGCL2, 0.1M MES, PEG 4000 20% /W/V), MICROBATCH UNDER OIL, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.80850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER,40.22 KD,95.6% REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 TYR A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 9 REMARK 465 PRO A 10 REMARK 465 GLN A 11 REMARK 465 ASN A 12 REMARK 465 ARG A 13 REMARK 465 ASP A 14 REMARK 465 ILE A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 ARG A 18 REMARK 465 SER A 19 REMARK 465 ASN A 20 REMARK 465 GLY A 21 REMARK 465 LYS A 22 REMARK 465 ASN A 23 REMARK 465 PRO A 24 REMARK 465 PHE A 25 REMARK 465 LYS A 26 REMARK 465 ARG A 27 REMARK 465 SER A 28 REMARK 465 THR A 29 REMARK 465 GLY A 30 REMARK 465 ARG A 31 REMARK 465 LYS A 32 REMARK 465 VAL A 33 REMARK 465 SER A 34 REMARK 465 ASN A 35 REMARK 465 VAL A 36 REMARK 465 ILE A 37 REMARK 465 ILE A 38 REMARK 465 ILE A 39 REMARK 465 ILE A 40 REMARK 465 LEU A 41 REMARK 465 CYS A 42 REMARK 465 VAL A 43 REMARK 465 VAL A 44 REMARK 465 PHE A 45 REMARK 465 SER A 46 REMARK 465 GLY A 47 REMARK 465 LEU A 48 REMARK 465 GLY A 49 REMARK 465 GLY A 50 REMARK 465 VAL A 51 REMARK 465 ILE A 52 REMARK 465 VAL A 53 REMARK 465 TYR A 54 REMARK 465 ALA A 55 REMARK 465 HIS A 56 REMARK 465 GLY A 57 REMARK 465 LEU A 58 REMARK 465 LEU A 59 REMARK 465 ALA A 60 REMARK 465 GLY A 61 REMARK 465 MSE A 62 REMARK 465 TYR A 63 REMARK 465 GLN A 64 REMARK 465 ASN A 65 REMARK 465 LEU A 66 REMARK 465 ASP A 67 REMARK 465 SER A 68 REMARK 465 THR A 69 REMARK 465 VAL A 70 REMARK 465 LEU A 71 REMARK 465 ASP A 72 REMARK 465 SER A 73 REMARK 465 SER A 74 REMARK 465 ALA A 75 REMARK 465 LYS A 76 REMARK 465 GLU A 77 REMARK 465 SER A 78 REMARK 465 LEU A 79 REMARK 465 THR A 80 REMARK 465 ALA A 81 REMARK 465 SER A 82 REMARK 465 SER A 83 REMARK 465 ASN A 84 REMARK 465 SER A 85 REMARK 465 SER A 86 REMARK 465 ASN A 87 REMARK 465 THR A 88 REMARK 465 SER A 89 REMARK 465 SER A 90 REMARK 465 ILE A 91 REMARK 465 ALA A 92 REMARK 465 GLU A 93 REMARK 465 ILE A 94 REMARK 465 PRO A 95 REMARK 465 ALA A 96 REMARK 465 ASN A 97 REMARK 465 ILE A 98 REMARK 465 ASP A 99 REMARK 465 GLY A 100 REMARK 465 GLY A 379 REMARK 465 SER A 380 REMARK 465 SER A 381 REMARK 465 LYS A 382 REMARK 465 THR A 383 REMARK 465 ALA A 384 REMARK 465 GLY A 385 REMARK 465 SER A 386 REMARK 465 SER A 387 REMARK 465 SER A 388 REMARK 465 LEU A 389 REMARK 465 SER A 390 REMARK 465 GLY A 391 REMARK 465 TYR A 392 REMARK 465 SER A 393 REMARK 465 GLU A 394 REMARK 465 ASP A 395 REMARK 465 LEU A 396 REMARK 465 GLU A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 ASN B 4 REMARK 465 ARG B 5 REMARK 465 ARG B 6 REMARK 465 TYR B 7 REMARK 465 GLN B 8 REMARK 465 GLU B 9 REMARK 465 PRO B 10 REMARK 465 GLN B 11 REMARK 465 ASN B 12 REMARK 465 ARG B 13 REMARK 465 ASP B 14 REMARK 465 ILE B 15 REMARK 465 SER B 16 REMARK 465 SER B 17 REMARK 465 ARG B 18 REMARK 465 SER B 19 REMARK 465 ASN B 20 REMARK 465 GLY B 21 REMARK 465 LYS B 22 REMARK 465 ASN B 23 REMARK 465 PRO B 24 REMARK 465 PHE B 25 REMARK 465 LYS B 26 REMARK 465 ARG B 27 REMARK 465 SER B 28 REMARK 465 THR B 29 REMARK 465 GLY B 30 REMARK 465 ARG B 31 REMARK 465 LYS B 32 REMARK 465 VAL B 33 REMARK 465 SER B 34 REMARK 465 ASN B 35 REMARK 465 VAL B 36 REMARK 465 ILE B 37 REMARK 465 ILE B 38 REMARK 465 ILE B 39 REMARK 465 ILE B 40 REMARK 465 LEU B 41 REMARK 465 CYS B 42 REMARK 465 VAL B 43 REMARK 465 VAL B 44 REMARK 465 PHE B 45 REMARK 465 SER B 46 REMARK 465 GLY B 47 REMARK 465 LEU B 48 REMARK 465 GLY B 49 REMARK 465 GLY B 50 REMARK 465 VAL B 51 REMARK 465 ILE B 52 REMARK 465 VAL B 53 REMARK 465 TYR B 54 REMARK 465 ALA B 55 REMARK 465 HIS B 56 REMARK 465 GLY B 57 REMARK 465 LEU B 58 REMARK 465 LEU B 59 REMARK 465 ALA B 60 REMARK 465 GLY B 61 REMARK 465 MSE B 62 REMARK 465 TYR B 63 REMARK 465 GLN B 64 REMARK 465 ASN B 65 REMARK 465 LEU B 66 REMARK 465 ASP B 67 REMARK 465 SER B 68 REMARK 465 THR B 69 REMARK 465 VAL B 70 REMARK 465 LEU B 71 REMARK 465 ASP B 72 REMARK 465 SER B 73 REMARK 465 SER B 74 REMARK 465 ALA B 75 REMARK 465 LYS B 76 REMARK 465 GLU B 77 REMARK 465 SER B 78 REMARK 465 LEU B 79 REMARK 465 THR B 80 REMARK 465 ALA B 81 REMARK 465 SER B 82 REMARK 465 SER B 83 REMARK 465 ASN B 84 REMARK 465 SER B 85 REMARK 465 SER B 86 REMARK 465 ASN B 87 REMARK 465 THR B 88 REMARK 465 SER B 89 REMARK 465 SER B 90 REMARK 465 ILE B 91 REMARK 465 ALA B 92 REMARK 465 GLU B 93 REMARK 465 ILE B 94 REMARK 465 PRO B 95 REMARK 465 ALA B 96 REMARK 465 ASN B 97 REMARK 465 ILE B 98 REMARK 465 ASP B 99 REMARK 465 GLY B 100 REMARK 465 GLY B 379 REMARK 465 SER B 380 REMARK 465 SER B 381 REMARK 465 LYS B 382 REMARK 465 THR B 383 REMARK 465 ALA B 384 REMARK 465 GLY B 385 REMARK 465 SER B 386 REMARK 465 SER B 387 REMARK 465 SER B 388 REMARK 465 LEU B 389 REMARK 465 SER B 390 REMARK 465 GLY B 391 REMARK 465 TYR B 392 REMARK 465 SER B 393 REMARK 465 GLU B 394 REMARK 465 ASP B 395 REMARK 465 LEU B 396 REMARK 465 GLU B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 122 -15.51 82.92 REMARK 500 LYS A 141 70.40 45.79 REMARK 500 GLU A 158 -0.33 69.21 REMARK 500 THR A 214 -175.51 -49.68 REMARK 500 ASP A 219 -71.79 -58.83 REMARK 500 ALA A 230 102.89 -58.96 REMARK 500 ASN A 231 26.62 -140.62 REMARK 500 THR A 233 -130.71 -112.65 REMARK 500 SER A 314 -70.20 -134.73 REMARK 500 GLU A 360 -125.02 50.09 REMARK 500 PRO B 120 -165.59 -57.61 REMARK 500 PRO B 157 -59.18 -27.91 REMARK 500 SER B 224 22.85 -151.99 REMARK 500 VAL B 225 -67.02 -137.06 REMARK 500 PHE B 229 107.91 -51.19 REMARK 500 ALA B 230 28.26 -164.19 REMARK 500 SER B 314 -64.71 -104.81 REMARK 500 VAL B 336 -169.18 -111.63 REMARK 500 GLU B 360 -121.11 43.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 122 THR A 123 137.14 REMARK 500 GLY A 329 ALA A 330 -142.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: QLR103 RELATED DB: TARGETDB DBREF 3PE5 A 1 395 UNP A7VV38 A7VV38_9CLOT 1 395 DBREF 3PE5 B 1 395 UNP A7VV38 A7VV38_9CLOT 1 395 SEQADV 3PE5 LEU A 396 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 GLU A 397 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 HIS A 398 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 HIS A 399 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 HIS A 400 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 HIS A 401 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 HIS A 402 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 HIS A 403 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 LEU B 396 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 GLU B 397 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 HIS B 398 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 HIS B 399 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 HIS B 400 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 HIS B 401 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 HIS B 402 UNP A7VV38 EXPRESSION TAG SEQADV 3PE5 HIS B 403 UNP A7VV38 EXPRESSION TAG SEQRES 1 A 403 MSE ALA SER ASN ARG ARG TYR GLN GLU PRO GLN ASN ARG SEQRES 2 A 403 ASP ILE SER SER ARG SER ASN GLY LYS ASN PRO PHE LYS SEQRES 3 A 403 ARG SER THR GLY ARG LYS VAL SER ASN VAL ILE ILE ILE SEQRES 4 A 403 ILE LEU CYS VAL VAL PHE SER GLY LEU GLY GLY VAL ILE SEQRES 5 A 403 VAL TYR ALA HIS GLY LEU LEU ALA GLY MSE TYR GLN ASN SEQRES 6 A 403 LEU ASP SER THR VAL LEU ASP SER SER ALA LYS GLU SER SEQRES 7 A 403 LEU THR ALA SER SER ASN SER SER ASN THR SER SER ILE SEQRES 8 A 403 ALA GLU ILE PRO ALA ASN ILE ASP GLY THR LEU ILE LYS SEQRES 9 A 403 ASP PRO MSE VAL LEU ASN ILE MSE LEU PHE GLY SER ASP SEQRES 10 A 403 GLU ARG PRO GLY GLU THR GLY TYR GLY ARG SER ASP THR SEQRES 11 A 403 MSE MSE LEU LEU SER ILE ASP ASN ARG ASN LYS LYS LEU SEQRES 12 A 403 LYS LEU THR SER PHE MSE ARG ASP THR TYR VAL ASN VAL SEQRES 13 A 403 PRO GLU TRP GLY ASP THR LYS LEU THR HIS ALA TYR SER SEQRES 14 A 403 TYR GLY GLY PRO ALA LEU ALA ILE GLU THR ILE GLU ARG SEQRES 15 A 403 ASN PHE GLY ILE ASP ILE ASP ARG TYR ALA VAL VAL TYR SEQRES 16 A 403 PHE ASP THR PHE PRO GLY ILE VAL ASP THR LEU GLY GLY SEQRES 17 A 403 ILE GLU VAL GLU MSE THR GLN THR GLU ALA ASP VAL MSE SEQRES 18 A 403 ASN GLU SER VAL GLY PRO GLU PHE ALA ASN PHE THR GLU SEQRES 19 A 403 GLY LYS ASN THR LEU ASN GLY ALA THR ALA LEU VAL TYR SEQRES 20 A 403 VAL ARG ILE ARG TYR GLY VAL GLY ASP ASP PHE GLY ARG SEQRES 21 A 403 THR GLN ARG GLN ARG ASP PHE MSE LEU GLN VAL LEU ASN SEQRES 22 A 403 LYS VAL LYS GLY THR ARG ASP VAL GLY THR LEU LEU THR SEQRES 23 A 403 LEU LEU THR LYS ILE LEU PRO GLY VAL THR THR ASN ILE SEQRES 24 A 403 SER VAL ASN GLU MSE ALA GLY LEU ALA GLY GLY ALA ILE SEQRES 25 A 403 SER SER TYR MSE ASP TYR PRO MSE TYR GLN PHE ARG LEU SEQRES 26 A 403 PRO GLU ASP GLY ALA PHE SER ALA VAL ASP VAL ASP ALA SEQRES 27 A 403 GLY ASN VAL LEU ALA ILE ASP ASP TRP ASP ALA ALA ARG SEQRES 28 A 403 GLU HIS LEU GLN ARG PHE ILE TYR GLU ASP THR VAL ASP SEQRES 29 A 403 PRO ILE TYR GLY PRO SER THR GLU THR TYR GLY SER GLU SEQRES 30 A 403 MSE GLY SER SER LYS THR ALA GLY SER SER SER LEU SER SEQRES 31 A 403 GLY TYR SER GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 403 MSE ALA SER ASN ARG ARG TYR GLN GLU PRO GLN ASN ARG SEQRES 2 B 403 ASP ILE SER SER ARG SER ASN GLY LYS ASN PRO PHE LYS SEQRES 3 B 403 ARG SER THR GLY ARG LYS VAL SER ASN VAL ILE ILE ILE SEQRES 4 B 403 ILE LEU CYS VAL VAL PHE SER GLY LEU GLY GLY VAL ILE SEQRES 5 B 403 VAL TYR ALA HIS GLY LEU LEU ALA GLY MSE TYR GLN ASN SEQRES 6 B 403 LEU ASP SER THR VAL LEU ASP SER SER ALA LYS GLU SER SEQRES 7 B 403 LEU THR ALA SER SER ASN SER SER ASN THR SER SER ILE SEQRES 8 B 403 ALA GLU ILE PRO ALA ASN ILE ASP GLY THR LEU ILE LYS SEQRES 9 B 403 ASP PRO MSE VAL LEU ASN ILE MSE LEU PHE GLY SER ASP SEQRES 10 B 403 GLU ARG PRO GLY GLU THR GLY TYR GLY ARG SER ASP THR SEQRES 11 B 403 MSE MSE LEU LEU SER ILE ASP ASN ARG ASN LYS LYS LEU SEQRES 12 B 403 LYS LEU THR SER PHE MSE ARG ASP THR TYR VAL ASN VAL SEQRES 13 B 403 PRO GLU TRP GLY ASP THR LYS LEU THR HIS ALA TYR SER SEQRES 14 B 403 TYR GLY GLY PRO ALA LEU ALA ILE GLU THR ILE GLU ARG SEQRES 15 B 403 ASN PHE GLY ILE ASP ILE ASP ARG TYR ALA VAL VAL TYR SEQRES 16 B 403 PHE ASP THR PHE PRO GLY ILE VAL ASP THR LEU GLY GLY SEQRES 17 B 403 ILE GLU VAL GLU MSE THR GLN THR GLU ALA ASP VAL MSE SEQRES 18 B 403 ASN GLU SER VAL GLY PRO GLU PHE ALA ASN PHE THR GLU SEQRES 19 B 403 GLY LYS ASN THR LEU ASN GLY ALA THR ALA LEU VAL TYR SEQRES 20 B 403 VAL ARG ILE ARG TYR GLY VAL GLY ASP ASP PHE GLY ARG SEQRES 21 B 403 THR GLN ARG GLN ARG ASP PHE MSE LEU GLN VAL LEU ASN SEQRES 22 B 403 LYS VAL LYS GLY THR ARG ASP VAL GLY THR LEU LEU THR SEQRES 23 B 403 LEU LEU THR LYS ILE LEU PRO GLY VAL THR THR ASN ILE SEQRES 24 B 403 SER VAL ASN GLU MSE ALA GLY LEU ALA GLY GLY ALA ILE SEQRES 25 B 403 SER SER TYR MSE ASP TYR PRO MSE TYR GLN PHE ARG LEU SEQRES 26 B 403 PRO GLU ASP GLY ALA PHE SER ALA VAL ASP VAL ASP ALA SEQRES 27 B 403 GLY ASN VAL LEU ALA ILE ASP ASP TRP ASP ALA ALA ARG SEQRES 28 B 403 GLU HIS LEU GLN ARG PHE ILE TYR GLU ASP THR VAL ASP SEQRES 29 B 403 PRO ILE TYR GLY PRO SER THR GLU THR TYR GLY SER GLU SEQRES 30 B 403 MSE GLY SER SER LYS THR ALA GLY SER SER SER LEU SER SEQRES 31 B 403 GLY TYR SER GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS MODRES 3PE5 MSE A 107 MET SELENOMETHIONINE MODRES 3PE5 MSE A 112 MET SELENOMETHIONINE MODRES 3PE5 MSE A 131 MET SELENOMETHIONINE MODRES 3PE5 MSE A 132 MET SELENOMETHIONINE MODRES 3PE5 MSE A 149 MET SELENOMETHIONINE MODRES 3PE5 MSE A 213 MET SELENOMETHIONINE MODRES 3PE5 MSE A 221 MET SELENOMETHIONINE MODRES 3PE5 MSE A 268 MET SELENOMETHIONINE MODRES 3PE5 MSE A 304 MET SELENOMETHIONINE MODRES 3PE5 MSE A 316 MET SELENOMETHIONINE MODRES 3PE5 MSE A 320 MET SELENOMETHIONINE MODRES 3PE5 MSE A 378 MET SELENOMETHIONINE MODRES 3PE5 MSE B 107 MET SELENOMETHIONINE MODRES 3PE5 MSE B 112 MET SELENOMETHIONINE MODRES 3PE5 MSE B 131 MET SELENOMETHIONINE MODRES 3PE5 MSE B 132 MET SELENOMETHIONINE MODRES 3PE5 MSE B 149 MET SELENOMETHIONINE MODRES 3PE5 MSE B 213 MET SELENOMETHIONINE MODRES 3PE5 MSE B 221 MET SELENOMETHIONINE MODRES 3PE5 MSE B 268 MET SELENOMETHIONINE MODRES 3PE5 MSE B 304 MET SELENOMETHIONINE MODRES 3PE5 MSE B 316 MET SELENOMETHIONINE MODRES 3PE5 MSE B 320 MET SELENOMETHIONINE MODRES 3PE5 MSE B 378 MET SELENOMETHIONINE HET MSE A 107 8 HET MSE A 112 8 HET MSE A 131 8 HET MSE A 132 8 HET MSE A 149 8 HET MSE A 213 8 HET MSE A 221 8 HET MSE A 268 8 HET MSE A 304 8 HET MSE A 316 8 HET MSE A 320 8 HET MSE A 378 8 HET MSE B 107 8 HET MSE B 112 8 HET MSE B 131 8 HET MSE B 132 8 HET MSE B 149 8 HET MSE B 213 8 HET MSE B 221 8 HET MSE B 268 8 HET MSE B 304 8 HET MSE B 316 8 HET MSE B 320 8 HET MSE B 378 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 24(C5 H11 N O2 SE) FORMUL 3 HOH *64(H2 O) HELIX 1 1 LEU A 164 GLY A 185 1 22 HELIX 2 2 THR A 198 GLY A 207 1 10 HELIX 3 3 THR A 214 GLU A 223 1 10 HELIX 4 4 ASN A 240 ILE A 250 1 11 HELIX 5 5 ASP A 256 THR A 278 1 23 HELIX 6 6 ASP A 280 LEU A 292 1 13 HELIX 7 7 SER A 300 SER A 314 1 15 HELIX 8 8 TYR A 315 TYR A 318 5 4 HELIX 9 9 ASP A 346 GLU A 360 1 15 HELIX 10 10 VAL A 363 GLY A 368 1 6 HELIX 11 11 LEU B 164 GLY B 185 1 22 HELIX 12 12 THR B 198 LEU B 206 1 9 HELIX 13 13 THR B 214 ASN B 222 1 9 HELIX 14 14 ASN B 240 ILE B 250 1 11 HELIX 15 15 ASP B 256 GLY B 277 1 22 HELIX 16 16 ASP B 280 LEU B 292 1 13 HELIX 17 17 SER B 300 SER B 314 1 15 HELIX 18 18 TYR B 315 TYR B 318 5 4 HELIX 19 19 ASP B 346 GLU B 360 1 15 HELIX 20 20 VAL B 363 GLY B 368 1 6 SHEET 1 A 7 VAL A 295 THR A 297 0 SHEET 2 A 7 ARG A 190 TYR A 195 -1 N VAL A 193 O THR A 296 SHEET 3 A 7 VAL A 108 SER A 116 1 N PHE A 114 O VAL A 194 SHEET 4 A 7 THR A 130 ASP A 137 -1 O ILE A 136 N LEU A 109 SHEET 5 A 7 LYS A 142 PHE A 148 -1 O LYS A 144 N SER A 135 SHEET 6 A 7 MSE A 320 LEU A 325 1 O TYR A 321 N LEU A 143 SHEET 7 A 7 SER A 376 GLU A 377 -1 O SER A 376 N GLN A 322 SHEET 1 B 2 TYR A 153 VAL A 156 0 SHEET 2 B 2 GLY A 160 LYS A 163 -1 O THR A 162 N VAL A 154 SHEET 1 C 2 ILE A 209 GLU A 212 0 SHEET 2 C 2 LYS A 236 LEU A 239 -1 O LEU A 239 N ILE A 209 SHEET 1 D 2 PHE A 331 VAL A 336 0 SHEET 2 D 2 GLY A 339 ILE A 344 -1 O GLY A 339 N VAL A 336 SHEET 1 E 7 VAL B 295 THR B 297 0 SHEET 2 E 7 ARG B 190 TYR B 195 -1 N VAL B 193 O THR B 296 SHEET 3 E 7 VAL B 108 SER B 116 1 N MSE B 112 O ARG B 190 SHEET 4 E 7 THR B 130 ASP B 137 -1 O MSE B 132 N LEU B 113 SHEET 5 E 7 LYS B 142 PHE B 148 -1 O LYS B 144 N SER B 135 SHEET 6 E 7 MSE B 320 LEU B 325 1 O TYR B 321 N LEU B 145 SHEET 7 E 7 SER B 376 GLU B 377 -1 O SER B 376 N GLN B 322 SHEET 1 F 2 TYR B 153 VAL B 156 0 SHEET 2 F 2 GLY B 160 LYS B 163 -1 O THR B 162 N VAL B 154 SHEET 1 G 2 ILE B 209 MSE B 213 0 SHEET 2 G 2 GLY B 235 LEU B 239 -1 O LEU B 239 N ILE B 209 SHEET 1 H 2 PHE B 331 VAL B 336 0 SHEET 2 H 2 GLY B 339 ILE B 344 -1 O GLY B 339 N VAL B 336 LINK C PRO A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N VAL A 108 1555 1555 1.33 LINK C ILE A 111 N MSE A 112 1555 1555 1.32 LINK C MSE A 112 N LEU A 113 1555 1555 1.33 LINK C THR A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N MSE A 132 1555 1555 1.32 LINK C MSE A 132 N LEU A 133 1555 1555 1.32 LINK C PHE A 148 N MSE A 149 1555 1555 1.32 LINK C MSE A 149 N ARG A 150 1555 1555 1.33 LINK C GLU A 212 N MSE A 213 1555 1555 1.33 LINK C MSE A 213 N THR A 214 1555 1555 1.33 LINK C VAL A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N ASN A 222 1555 1555 1.33 LINK C PHE A 267 N MSE A 268 1555 1555 1.33 LINK C MSE A 268 N LEU A 269 1555 1555 1.33 LINK C GLU A 303 N MSE A 304 1555 1555 1.33 LINK C MSE A 304 N ALA A 305 1555 1555 1.33 LINK C TYR A 315 N MSE A 316 1555 1555 1.33 LINK C MSE A 316 N ASP A 317 1555 1555 1.33 LINK C PRO A 319 N MSE A 320 1555 1555 1.32 LINK C MSE A 320 N TYR A 321 1555 1555 1.33 LINK C GLU A 377 N MSE A 378 1555 1555 1.32 LINK C PRO B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N VAL B 108 1555 1555 1.34 LINK C ILE B 111 N MSE B 112 1555 1555 1.33 LINK C MSE B 112 N LEU B 113 1555 1555 1.32 LINK C THR B 130 N MSE B 131 1555 1555 1.33 LINK C MSE B 131 N MSE B 132 1555 1555 1.32 LINK C MSE B 132 N LEU B 133 1555 1555 1.33 LINK C PHE B 148 N MSE B 149 1555 1555 1.32 LINK C MSE B 149 N ARG B 150 1555 1555 1.33 LINK C GLU B 212 N MSE B 213 1555 1555 1.33 LINK C MSE B 213 N THR B 214 1555 1555 1.33 LINK C VAL B 220 N MSE B 221 1555 1555 1.33 LINK C MSE B 221 N ASN B 222 1555 1555 1.33 LINK C PHE B 267 N MSE B 268 1555 1555 1.33 LINK C MSE B 268 N LEU B 269 1555 1555 1.33 LINK C GLU B 303 N MSE B 304 1555 1555 1.33 LINK C MSE B 304 N ALA B 305 1555 1555 1.33 LINK C TYR B 315 N MSE B 316 1555 1555 1.33 LINK C MSE B 316 N ASP B 317 1555 1555 1.33 LINK C PRO B 319 N MSE B 320 1555 1555 1.33 LINK C MSE B 320 N TYR B 321 1555 1555 1.33 LINK C GLU B 377 N MSE B 378 1555 1555 1.33 CISPEP 1 LEU A 325 PRO A 326 0 -5.10 CISPEP 2 GLY B 226 PRO B 227 0 -5.28 CISPEP 3 LEU B 325 PRO B 326 0 -6.30 CRYST1 70.778 49.617 105.282 90.00 106.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014129 0.000000 0.004144 0.00000 SCALE2 0.000000 0.020154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009898 0.00000