HEADER LYASE 25-OCT-10 3PE8 TITLE CRYSTAL STRUCTURE OF ENOYL-COA HYDRATASE FROM MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-COA HYDRATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084/MC2 155; SOURCE 5 GENE: MSMEG_2641; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS EMERALD BIOSTRUCTURES, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 2 GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 06-SEP-23 3PE8 1 REMARK SEQADV LINK REVDAT 3 22-APR-15 3PE8 1 JRNL VERSN REVDAT 2 16-FEB-11 3PE8 1 KEYWDS REVDAT 1 08-DEC-10 3PE8 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 35962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1812 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2314 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1618 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : -0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.178 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1677 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1089 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2293 ; 1.514 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2655 ; 0.966 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ; 5.358 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;34.666 ;23.521 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 260 ;11.581 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.607 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 276 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1916 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 336 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1101 ; 0.796 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 449 ; 0.250 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1756 ; 1.447 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 576 ; 2.380 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 532 ; 3.857 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8490 15.6780 74.5990 REMARK 3 T TENSOR REMARK 3 T11: 0.0159 T22: 0.0547 REMARK 3 T33: 0.0832 T12: -0.0173 REMARK 3 T13: -0.0126 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 1.7078 L22: 1.6681 REMARK 3 L33: 0.6333 L12: -0.6279 REMARK 3 L13: -0.0171 L23: -0.0130 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.1271 S13: 0.1925 REMARK 3 S21: 0.0581 S22: 0.0358 S23: -0.2975 REMARK 3 S31: -0.0690 S32: 0.1412 S33: -0.0361 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3560 7.9970 73.8520 REMARK 3 T TENSOR REMARK 3 T11: 0.0129 T22: 0.0313 REMARK 3 T33: 0.0239 T12: -0.0030 REMARK 3 T13: -0.0028 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.9580 L22: 1.0477 REMARK 3 L33: 0.6443 L12: -0.0434 REMARK 3 L13: 0.0680 L23: 0.1296 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: -0.0796 S13: 0.0369 REMARK 3 S21: 0.0467 S22: 0.0009 S23: -0.1097 REMARK 3 S31: 0.0102 S32: 0.0494 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9980 -3.9850 67.4800 REMARK 3 T TENSOR REMARK 3 T11: 0.0417 T22: 0.0343 REMARK 3 T33: 0.0385 T12: 0.0120 REMARK 3 T13: 0.0202 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.5324 L22: 5.0431 REMARK 3 L33: 5.4136 L12: -1.0675 REMARK 3 L13: 0.7515 L23: -4.2856 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: 0.0574 S13: -0.0760 REMARK 3 S21: -0.3939 S22: -0.2471 S23: -0.2554 REMARK 3 S31: 0.3578 S32: 0.3390 S33: 0.1896 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7910 -5.2960 76.4770 REMARK 3 T TENSOR REMARK 3 T11: 0.0161 T22: 0.0253 REMARK 3 T33: 0.0208 T12: 0.0037 REMARK 3 T13: -0.0042 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.4496 L22: 1.7993 REMARK 3 L33: 1.4825 L12: 0.2710 REMARK 3 L13: -0.1494 L23: 0.5045 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: -0.0380 S13: -0.0752 REMARK 3 S21: 0.0212 S22: 0.0073 S23: -0.0935 REMARK 3 S31: -0.0145 S32: 0.0337 S33: 0.0109 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7870 12.8020 68.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.0230 T22: 0.0208 REMARK 3 T33: 0.0216 T12: 0.0014 REMARK 3 T13: -0.0130 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.7938 L22: 1.0365 REMARK 3 L33: 0.5597 L12: -0.1002 REMARK 3 L13: -0.4323 L23: 0.2152 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: 0.0249 S13: 0.0937 REMARK 3 S21: -0.0265 S22: 0.0131 S23: 0.0192 REMARK 3 S31: -0.0171 S32: -0.0157 S33: -0.0276 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 210 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4380 -1.5390 89.3080 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.0869 REMARK 3 T33: 0.0155 T12: 0.0211 REMARK 3 T13: -0.0139 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.7673 L22: 6.5186 REMARK 3 L33: 2.2941 L12: -1.3626 REMARK 3 L13: 0.6474 L23: 0.2619 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: -0.1306 S13: -0.0939 REMARK 3 S21: 0.2687 S22: 0.1041 S23: 0.0853 REMARK 3 S31: -0.0476 S32: -0.0323 S33: -0.1280 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5880 -11.7550 89.4900 REMARK 3 T TENSOR REMARK 3 T11: 0.2526 T22: 0.2125 REMARK 3 T33: 0.2871 T12: 0.1229 REMARK 3 T13: -0.2371 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 18.1423 L22: 32.4882 REMARK 3 L33: 26.9830 L12: -14.3852 REMARK 3 L13: -8.8660 L23: 17.7836 REMARK 3 S TENSOR REMARK 3 S11: -0.7289 S12: -0.8164 S13: 0.2999 REMARK 3 S21: 1.7057 S22: 1.3109 S23: -1.7655 REMARK 3 S31: 0.8896 S32: 1.3457 S33: -0.5820 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : ASYMMETRIC CUT SINGLE CRYSTAL REMARK 200 SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35962 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.46 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3H81 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INTERNAL TRACKING NUMBER 217319A12. REMARK 280 PACT SCREEN CONDITION A12: 0.01 M ZNCL2, 0.1 M NA OAC PH 5, 20% REMARK 280 PEG6000 MYSMA.01566.A.A1 PW29040 AT 25.27 MG/ML, VAPOR DIFFUSION, REMARK 280 SITTING DROP, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 43.70500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.23309 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 61.73000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 43.70500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.23309 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 61.73000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 43.70500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.23309 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 61.73000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 43.70500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.23309 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.73000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 43.70500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.23309 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.73000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 43.70500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.23309 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 61.73000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.46619 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 123.46000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 50.46619 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 123.46000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 50.46619 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 123.46000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 50.46619 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 123.46000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 50.46619 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 123.46000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 50.46619 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 123.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -343.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 185.19000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 185.19000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 185.19000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 331 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 440 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 72 REMARK 465 ASP A 73 REMARK 465 THR A 74 REMARK 465 THR A 75 REMARK 465 GLU A 76 REMARK 465 LEU A 77 REMARK 465 PRO A 78 REMARK 465 ASP A 79 REMARK 465 ILE A 80 REMARK 465 SER A 232 REMARK 465 GLY A 233 REMARK 465 ASP A 234 REMARK 465 ASP A 235 REMARK 465 ILE A 236 REMARK 465 ALA A 237 REMARK 465 ALA A 238 REMARK 465 SER A 239 REMARK 465 ARG A 240 REMARK 465 ALA A 241 REMARK 465 SER A 242 REMARK 465 VAL A 243 REMARK 465 ILE A 244 REMARK 465 GLU A 245 REMARK 465 ARG A 246 REMARK 465 GLY A 247 REMARK 465 ARG A 248 REMARK 465 SER A 249 REMARK 465 GLN A 250 REMARK 465 VAL A 251 REMARK 465 ARG A 252 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 4 OG REMARK 470 LEU A 68 CG CD1 CD2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LEU A 71 CG CD1 CD2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 226 CG CD OE1 NE2 REMARK 470 ARG A 229 CG CD NE CZ NH1 NH2 REMARK 470 THR A 231 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 280 O HOH A 350 1.98 REMARK 500 CB ALA A 40 O HOH A 280 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 101 -112.08 62.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 254 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 105 OE2 REMARK 620 2 HIS A 125 NE2 109.0 REMARK 620 3 HOH A 324 O 112.5 94.6 REMARK 620 4 HOH A 325 O 115.0 113.8 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 254 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 125 NE2 REMARK 620 2 HOH A 324 O 99.9 REMARK 620 3 HOH A 325 O 103.4 105.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 254 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYSMA.01566.A RELATED DB: TARGETDB DBREF 3PE8 A 1 252 UNP A0QVP0 A0QVP0_MYCS2 1 252 SEQADV 3PE8 GLY A -3 UNP A0QVP0 EXPRESSION TAG SEQADV 3PE8 PRO A -2 UNP A0QVP0 EXPRESSION TAG SEQADV 3PE8 GLY A -1 UNP A0QVP0 EXPRESSION TAG SEQADV 3PE8 SER A 0 UNP A0QVP0 EXPRESSION TAG SEQRES 1 A 256 GLY PRO GLY SER MET ALA ASP SER PRO VAL LEU LEU VAL SEQRES 2 A 256 ASP THR THR ASP ARG VAL ARG THR LEU THR LEU ASN ARG SEQRES 3 A 256 PRO GLN SER ARG ASN ALA LEU SER ALA GLU LEU ARG SER SEQRES 4 A 256 THR PHE PHE ARG ALA LEU SER ASP ALA GLN ASN ASP ASP SEQRES 5 A 256 ASP VAL ASP VAL VAL ILE VAL THR GLY ALA ASP PRO VAL SEQRES 6 A 256 PHE CYS ALA GLY LEU ASP LEU LYS GLU LEU GLY ASP THR SEQRES 7 A 256 THR GLU LEU PRO ASP ILE SER PRO LYS TRP PRO ASP MET SEQRES 8 A 256 THR LYS PRO VAL ILE GLY ALA ILE ASN GLY ALA ALA VAL SEQRES 9 A 256 THR GLY GLY LEU GLU LEU ALA LEU TYR CYS ASP ILE LEU SEQRES 10 A 256 ILE ALA SER GLU ASN ALA LYS PHE ALA ASP THR HIS ALA SEQRES 11 A 256 ARG VAL GLY LEU MET PRO THR TRP GLY LEU SER VAL ARG SEQRES 12 A 256 LEU PRO GLN LYS VAL GLY VAL GLY LEU ALA ARG ARG MET SEQRES 13 A 256 SER LEU THR GLY ASP TYR LEU SER ALA GLN ASP ALA LEU SEQRES 14 A 256 ARG ALA GLY LEU VAL THR GLU VAL VAL ALA HIS ASP ASP SEQRES 15 A 256 LEU LEU THR ALA ALA ARG ARG VAL ALA ALA SER ILE VAL SEQRES 16 A 256 GLY ASN ASN GLN LYS ALA VAL ARG ALA LEU LEU ASP SER SEQRES 17 A 256 TYR HIS ARG ILE ASP ALA LEU GLN THR GLY GLY ALA LEU SEQRES 18 A 256 TRP ALA GLU ALA GLU ALA ALA ARG GLN TRP MET ARG SER SEQRES 19 A 256 THR SER GLY ASP ASP ILE ALA ALA SER ARG ALA SER VAL SEQRES 20 A 256 ILE GLU ARG GLY ARG SER GLN VAL ARG HET EDO A 253 4 HET ZN A 254 2 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *297(H2 O) HELIX 1 1 ARG A 22 ARG A 26 5 5 HELIX 2 2 SER A 30 ASP A 47 1 18 HELIX 3 3 THR A 101 CYS A 110 1 10 HELIX 4 4 THR A 124 GLY A 129 1 6 HELIX 5 5 GLY A 135 GLY A 145 1 11 HELIX 6 6 GLY A 145 GLY A 156 1 12 HELIX 7 7 ALA A 161 GLY A 168 1 8 HELIX 8 8 ALA A 175 ASP A 177 5 3 HELIX 9 9 ASP A 178 GLY A 192 1 15 HELIX 10 10 ASN A 194 THR A 231 1 38 SHEET 1 A 6 LEU A 7 THR A 12 0 SHEET 2 A 6 VAL A 15 LEU A 20 -1 O THR A 19 N LEU A 8 SHEET 3 A 6 VAL A 52 GLY A 57 1 O ILE A 54 N LEU A 18 SHEET 4 A 6 VAL A 91 ILE A 95 1 O ILE A 92 N VAL A 53 SHEET 5 A 6 ILE A 112 SER A 116 1 O ILE A 112 N GLY A 93 SHEET 6 A 6 VAL A 173 VAL A 174 1 O VAL A 174 N ALA A 115 SHEET 1 B 3 ALA A 98 VAL A 100 0 SHEET 2 B 3 LYS A 120 ALA A 122 1 O LYS A 120 N ALA A 99 SHEET 3 B 3 LEU A 159 SER A 160 -1 O LEU A 159 N PHE A 121 LINK OE2 GLU A 105 ZN A ZN A 254 1555 1555 2.04 LINK NE2 HIS A 125 ZN B ZN A 254 1555 1555 2.33 LINK NE2 HIS A 125 ZN A ZN A 254 1555 1555 2.34 LINK ZN B ZN A 254 O HOH A 324 1555 1555 2.07 LINK ZN A ZN A 254 O HOH A 324 1555 1555 2.25 LINK ZN A ZN A 254 O HOH A 325 1555 1555 1.89 LINK ZN B ZN A 254 O HOH A 325 1555 1555 2.19 CISPEP 1 ASP A 59 PRO A 60 0 4.74 SITE 1 AC1 5 LYS A 143 GLY A 145 ALA A 167 HOH A 369 SITE 2 AC1 5 HOH A 428 SITE 1 AC2 4 GLU A 105 HIS A 125 HOH A 324 HOH A 325 CRYST1 87.410 87.410 185.190 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011440 0.006605 0.000000 0.00000 SCALE2 0.000000 0.013210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005400 0.00000