data_3PEB # _entry.id 3PEB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3PEB RCSB RCSB062273 WWPDB D_1000062273 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id apc64016.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3PEB _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-10-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Mack, J.C.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The Structure of a Creatine_N Superfamily domain of a dipeptidase from Streptococcus thermophilus.' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cuff, M.E.' 1 primary 'Mack, J.C.' 2 primary 'Clancy, S.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 70.503 _cell.length_b 70.503 _cell.length_c 160.388 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3PEB _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.entry_id 3PEB _symmetry.Int_Tables_number 178 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Dipeptidase 15816.548 1 ? ? 'N-terminal domain' ? 2 non-polymer syn '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' 207.290 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 10 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 water nat water 18.015 160 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)SKLDRIRHFLNENKSGLAIVSDPVTVNYLTGFDCDPHERQ(MSE)FLFVYENREPALFVPALEVARASSVLD FPVFGYVDSENPWQKIKAGLASTDIPIIYAEFDNLNVTKFQGLQTVFEGRFENLTPFIHK(MSE)RVIK ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMSKLDRIRHFLNENKSGLAIVSDPVTVNYLTGFDCDPHERQMFLFVYENREPALFVPALEVARASSVLDFPVFGYVD SENPWQKIKAGLASTDIPIIYAEFDNLNVTKFQGLQTVFEGRFENLTPFIHKMRVIK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier apc64016.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 SER n 1 6 LYS n 1 7 LEU n 1 8 ASP n 1 9 ARG n 1 10 ILE n 1 11 ARG n 1 12 HIS n 1 13 PHE n 1 14 LEU n 1 15 ASN n 1 16 GLU n 1 17 ASN n 1 18 LYS n 1 19 SER n 1 20 GLY n 1 21 LEU n 1 22 ALA n 1 23 ILE n 1 24 VAL n 1 25 SER n 1 26 ASP n 1 27 PRO n 1 28 VAL n 1 29 THR n 1 30 VAL n 1 31 ASN n 1 32 TYR n 1 33 LEU n 1 34 THR n 1 35 GLY n 1 36 PHE n 1 37 ASP n 1 38 CYS n 1 39 ASP n 1 40 PRO n 1 41 HIS n 1 42 GLU n 1 43 ARG n 1 44 GLN n 1 45 MSE n 1 46 PHE n 1 47 LEU n 1 48 PHE n 1 49 VAL n 1 50 TYR n 1 51 GLU n 1 52 ASN n 1 53 ARG n 1 54 GLU n 1 55 PRO n 1 56 ALA n 1 57 LEU n 1 58 PHE n 1 59 VAL n 1 60 PRO n 1 61 ALA n 1 62 LEU n 1 63 GLU n 1 64 VAL n 1 65 ALA n 1 66 ARG n 1 67 ALA n 1 68 SER n 1 69 SER n 1 70 VAL n 1 71 LEU n 1 72 ASP n 1 73 PHE n 1 74 PRO n 1 75 VAL n 1 76 PHE n 1 77 GLY n 1 78 TYR n 1 79 VAL n 1 80 ASP n 1 81 SER n 1 82 GLU n 1 83 ASN n 1 84 PRO n 1 85 TRP n 1 86 GLN n 1 87 LYS n 1 88 ILE n 1 89 LYS n 1 90 ALA n 1 91 GLY n 1 92 LEU n 1 93 ALA n 1 94 SER n 1 95 THR n 1 96 ASP n 1 97 ILE n 1 98 PRO n 1 99 ILE n 1 100 ILE n 1 101 TYR n 1 102 ALA n 1 103 GLU n 1 104 PHE n 1 105 ASP n 1 106 ASN n 1 107 LEU n 1 108 ASN n 1 109 VAL n 1 110 THR n 1 111 LYS n 1 112 PHE n 1 113 GLN n 1 114 GLY n 1 115 LEU n 1 116 GLN n 1 117 THR n 1 118 VAL n 1 119 PHE n 1 120 GLU n 1 121 GLY n 1 122 ARG n 1 123 PHE n 1 124 GLU n 1 125 ASN n 1 126 LEU n 1 127 THR n 1 128 PRO n 1 129 PHE n 1 130 ILE n 1 131 HIS n 1 132 LYS n 1 133 MSE n 1 134 ARG n 1 135 VAL n 1 136 ILE n 1 137 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'pepQ, stu0629' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'LMG 18311' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 264199 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5M567_STRT2 _struct_ref.pdbx_db_accession Q5M567 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSKLDRIRHFLNENKSGLAIVSDPVTVNYLTGFDCDPHERQMFLFVYENREPALFVPALEVARASSVLDFPVFGYVDSEN PWQKIKAGLASTDIPIIYAEFDNLNVTKFQGLQTVFEGRFENLTPFIHKMRVIK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3PEB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 137 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5M567 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 134 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 134 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3PEB SER A 1 ? UNP Q5M567 ? ? 'EXPRESSION TAG' -2 1 1 3PEB ASN A 2 ? UNP Q5M567 ? ? 'EXPRESSION TAG' -1 2 1 3PEB ALA A 3 ? UNP Q5M567 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NHE non-polymer . '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' 'N-CYCLOHEXYLTAURINE; CHES' 'C8 H17 N O3 S' 207.290 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3PEB _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.64 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 66.19 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M CHES pH 9.5, 1.0M Sodium Citrate, VAPOR DIFFUSION, SITTING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2010-06-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97937 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97937 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM # _reflns.entry_id 3PEB _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 50.000 _reflns.number_obs 20449 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_netI_over_sigmaI 9.900 _reflns.pdbx_chi_squared 1.590 _reflns.pdbx_redundancy 23.800 _reflns.percent_possible_obs 99.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all 20449 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 29.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.850 1.880 ? ? ? 0.782 ? ? 0.628 15.400 ? 917 94.600 ? 1 1.880 1.920 ? ? ? 0.658 ? ? 0.658 16.800 ? 965 96.600 ? 2 1.920 1.950 ? ? ? 0.511 ? ? 0.673 19.000 ? 1016 99.000 ? 3 1.950 1.990 ? ? ? 0.418 ? ? 0.720 21.900 ? 984 100.000 ? 4 1.990 2.040 ? ? ? 0.324 ? ? 0.780 24.100 ? 1006 100.000 ? 5 2.040 2.080 ? ? ? 0.285 ? ? 0.816 25.000 ? 997 100.000 ? 6 2.080 2.140 ? ? ? 0.233 ? ? 0.847 25.100 ? 1014 100.000 ? 7 2.140 2.190 ? ? ? 0.192 ? ? 0.915 25.000 ? 1008 100.000 ? 8 2.190 2.260 ? ? ? 0.170 ? ? 0.956 24.900 ? 1009 100.000 ? 9 2.260 2.330 ? ? ? 0.151 ? ? 1.004 25.100 ? 1014 100.000 ? 10 2.330 2.410 ? ? ? 0.130 ? ? 1.057 25.100 ? 1007 100.000 ? 11 2.410 2.510 ? ? ? 0.122 ? ? 1.163 25.200 ? 1016 100.000 ? 12 2.510 2.630 ? ? ? 0.102 ? ? 1.254 25.500 ? 1019 100.000 ? 13 2.630 2.760 ? ? ? 0.090 ? ? 1.369 25.500 ? 1026 100.000 ? 14 2.760 2.940 ? ? ? 0.077 ? ? 1.614 25.800 ? 1037 100.000 ? 15 2.940 3.160 ? ? ? 0.071 ? ? 1.948 26.000 ? 1030 100.000 ? 16 3.160 3.480 ? ? ? 0.061 ? ? 2.304 26.100 ? 1046 100.000 ? 17 3.480 3.990 ? ? ? 0.054 ? ? 2.762 25.800 ? 1059 99.900 ? 18 3.990 5.020 ? ? ? 0.054 ? ? 3.181 25.100 ? 1094 99.800 ? 19 5.020 50.000 ? ? ? 0.066 ? ? 5.531 22.100 ? 1185 98.800 ? 20 # _refine.entry_id 3PEB _refine.ls_d_res_high 1.8600 _refine.ls_d_res_low 34.4300 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.4700 _refine.ls_number_reflns_obs 20287 _refine.ls_number_reflns_all 20287 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all 0.1713 _refine.ls_R_factor_obs 0.1713 _refine.ls_R_factor_R_work 0.1703 _refine.ls_wR_factor_R_work 0.1660 _refine.ls_R_factor_R_free 0.1904 _refine.ls_wR_factor_R_free 0.1871 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1034 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 35.5082 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.2500 _refine.aniso_B[2][2] 1.2500 _refine.aniso_B[3][3] -1.8800 _refine.aniso_B[1][2] 0.6300 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9660 _refine.correlation_coeff_Fo_to_Fc_free 0.9610 _refine.overall_SU_R_Cruickshank_DPI 0.0999 _refine.overall_SU_R_free 0.0951 _refine.pdbx_overall_ESU_R_Free 0.0950 _refine.overall_SU_ML 0.0570 _refine.overall_SU_B 4.1570 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.9098 _refine.B_iso_max 81.660 _refine.B_iso_min 20.430 _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1068 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.number_atoms_solvent 160 _refine_hist.number_atoms_total 1283 _refine_hist.d_res_high 1.8600 _refine_hist.d_res_low 34.4300 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1192 0.014 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 854 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1607 1.395 1.969 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2046 0.861 3.003 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 144 5.489 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 62 37.190 23.871 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 191 13.011 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 12.224 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 172 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1298 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 253 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 684 0.809 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 270 0.221 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1119 1.484 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 508 2.353 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 481 3.947 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.8600 _refine_ls_shell.d_res_low 1.9080 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 88.2800 _refine_ls_shell.number_reflns_R_work 1231 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2280 _refine_ls_shell.R_factor_R_free 0.2350 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 80 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1311 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3PEB _struct.title 'The Structure of a Creatine_N Superfamily domain of a dipeptidase from Streptococcus thermophilus.' _struct.pdbx_descriptor Dipeptidase _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PEB _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Creatinase_N domain, pfam01321, stu0629, HYDROLASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 4 ? N N N 4 ? O N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 5 ? ASN A 17 ? SER A 2 ASN A 14 1 ? 13 HELX_P HELX_P2 2 ASP A 26 ? GLY A 35 ? ASP A 23 GLY A 32 1 ? 10 HELX_P HELX_P3 3 GLU A 63 ? LEU A 71 ? GLU A 60 LEU A 68 1 ? 9 HELX_P HELX_P4 4 ASN A 83 ? LEU A 92 ? ASN A 80 LEU A 89 1 ? 10 HELX_P HELX_P5 5 ASN A 108 ? PHE A 119 ? ASN A 105 PHE A 116 1 ? 12 HELX_P HELX_P6 6 LEU A 126 ? ARG A 134 ? LEU A 123 ARG A 131 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.336 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A SER 5 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.336 ? covale3 covale ? ? A GLN 44 C ? ? ? 1_555 A MSE 45 N ? ? A GLN 41 A MSE 42 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale ? ? A MSE 45 C ? ? ? 1_555 A PHE 46 N ? ? A MSE 42 A PHE 43 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A LYS 132 C ? ? ? 1_555 A MSE 133 N ? ? A LYS 129 A MSE 130 1_555 ? ? ? ? ? ? ? 1.335 ? covale6 covale ? ? A MSE 133 C ? ? ? 1_555 A ARG 134 N ? ? A MSE 130 A ARG 131 1_555 ? ? ? ? ? ? ? 1.332 ? metalc1 metalc ? ? A PHE 119 O ? ? ? 1_555 M NA . NA ? ? A PHE 116 A NA 146 1_555 ? ? ? ? ? ? ? 2.319 ? metalc2 metalc ? ? N NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 147 A HOH 304 1_555 ? ? ? ? ? ? ? 2.321 ? metalc3 metalc ? ? A LEU 71 O ? ? ? 1_555 N NA . NA ? ? A LEU 68 A NA 147 1_555 ? ? ? ? ? ? ? 2.342 ? metalc4 metalc ? ? M NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 146 A HOH 203 1_555 ? ? ? ? ? ? ? 2.345 ? metalc5 metalc ? ? A SER 68 O ? ? ? 1_555 N NA . NA ? ? A SER 65 A NA 147 1_555 ? ? ? ? ? ? ? 2.387 ? metalc6 metalc ? ? M NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 146 A HOH 267 1_555 ? ? ? ? ? ? ? 2.423 ? metalc7 metalc ? ? N NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 147 A HOH 278 1_555 ? ? ? ? ? ? ? 2.447 ? metalc8 metalc ? ? N NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 147 A HOH 305 1_555 ? ? ? ? ? ? ? 2.479 ? metalc9 metalc ? ? N NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 147 A HOH 279 1_555 ? ? ? ? ? ? ? 2.492 ? metalc10 metalc ? ? M NA . NA ? ? ? 1_555 O HOH . O ? ? A NA 146 A HOH 262 1_555 ? ? ? ? ? ? ? 2.548 ? metalc11 metalc ? ? A GLN 116 O ? ? ? 1_555 M NA . NA ? ? A GLN 113 A NA 146 1_555 ? ? ? ? ? ? ? 2.552 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 75 ? TYR A 78 ? VAL A 72 TYR A 75 A 2 ALA A 56 ? PRO A 60 ? ALA A 53 PRO A 57 A 3 PHE A 46 ? TYR A 50 ? PHE A 43 TYR A 47 A 4 LEU A 21 ? VAL A 24 ? LEU A 18 VAL A 21 A 5 ASP A 96 ? ALA A 102 ? ASP A 93 ALA A 99 A 6 GLU A 120 ? ASN A 125 ? GLU A 117 ASN A 122 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 76 ? O PHE A 73 N LEU A 57 ? N LEU A 54 A 2 3 O ALA A 56 ? O ALA A 53 N PHE A 48 ? N PHE A 45 A 3 4 O LEU A 47 ? O LEU A 44 N VAL A 24 ? N VAL A 21 A 4 5 N ILE A 23 ? N ILE A 20 O TYR A 101 ? O TYR A 98 A 5 6 N ILE A 100 ? N ILE A 97 O ARG A 122 ? O ARG A 119 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NHE A 135' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE EDO A 136' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 137' AC4 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE EDO A 138' AC5 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 139' AC6 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 140' AC7 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 141' AC8 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 142' AC9 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 143' BC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EDO A 144' BC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EDO A 145' BC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA A 146' BC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE NA A 147' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ARG A 11 ? ARG A 8 . ? 1_555 ? 2 AC1 5 ARG A 53 ? ARG A 50 . ? 1_555 ? 3 AC1 5 PRO A 55 ? PRO A 52 . ? 1_555 ? 4 AC1 5 HOH O . ? HOH A 155 . ? 1_555 ? 5 AC1 5 HOH O . ? HOH A 156 . ? 1_555 ? 6 AC2 1 GLY A 91 ? GLY A 88 . ? 1_555 ? 7 AC3 4 ARG A 53 ? ARG A 50 . ? 1_555 ? 8 AC3 4 SER A 81 ? SER A 78 . ? 6_555 ? 9 AC3 4 ALA A 93 ? ALA A 90 . ? 1_555 ? 10 AC3 4 HOH O . ? HOH A 197 . ? 1_555 ? 11 AC4 9 ASN A 106 ? ASN A 103 . ? 1_555 ? 12 AC4 9 ASN A 106 ? ASN A 103 . ? 10_664 ? 13 AC4 9 ASN A 108 ? ASN A 105 . ? 1_555 ? 14 AC4 9 ASN A 108 ? ASN A 105 . ? 10_664 ? 15 AC4 9 HOH O . ? HOH A 159 . ? 1_555 ? 16 AC4 9 HOH O . ? HOH A 159 . ? 10_664 ? 17 AC4 9 HOH O . ? HOH A 160 . ? 1_555 ? 18 AC4 9 HOH O . ? HOH A 225 . ? 10_664 ? 19 AC4 9 HOH O . ? HOH A 225 . ? 1_555 ? 20 AC5 3 PRO A 27 ? PRO A 24 . ? 1_555 ? 21 AC5 3 ASP A 37 ? ASP A 34 . ? 1_555 ? 22 AC5 3 HOH O . ? HOH A 297 . ? 1_555 ? 23 AC6 3 GLY A 35 ? GLY A 32 . ? 1_555 ? 24 AC6 3 ASP A 37 ? ASP A 34 . ? 1_555 ? 25 AC6 3 ARG A 66 ? ARG A 63 . ? 1_555 ? 26 AC7 5 LYS A 89 ? LYS A 86 . ? 1_555 ? 27 AC7 5 LEU A 92 ? LEU A 89 . ? 1_555 ? 28 AC7 5 ALA A 93 ? ALA A 90 . ? 1_555 ? 29 AC7 5 THR A 95 ? THR A 92 . ? 1_555 ? 30 AC7 5 HOH O . ? HOH A 233 . ? 1_555 ? 31 AC8 7 MSE A 4 ? MSE A 1 . ? 5_554 ? 32 AC8 7 HIS A 12 ? HIS A 9 . ? 5_554 ? 33 AC8 7 LEU A 62 ? LEU A 59 . ? 1_555 ? 34 AC8 7 GLU A 63 ? GLU A 60 . ? 1_555 ? 35 AC8 7 ARG A 66 ? ARG A 63 . ? 1_555 ? 36 AC8 7 HOH O . ? HOH A 152 . ? 5_554 ? 37 AC8 7 HOH O . ? HOH A 244 . ? 1_555 ? 38 AC9 4 GLN A 116 ? GLN A 113 . ? 1_555 ? 39 AC9 4 GLY A 121 ? GLY A 118 . ? 1_555 ? 40 AC9 4 ARG A 122 ? ARG A 119 . ? 1_555 ? 41 AC9 4 PHE A 123 ? PHE A 120 . ? 1_555 ? 42 BC1 2 GLU A 42 ? GLU A 39 . ? 1_555 ? 43 BC1 2 HOH O . ? HOH A 182 . ? 1_555 ? 44 BC2 2 TRP A 85 ? TRP A 82 . ? 1_555 ? 45 BC2 2 THR A 117 ? THR A 114 . ? 1_555 ? 46 BC3 5 GLN A 116 ? GLN A 113 . ? 1_555 ? 47 BC3 5 PHE A 119 ? PHE A 116 . ? 1_555 ? 48 BC3 5 HOH O . ? HOH A 203 . ? 1_555 ? 49 BC3 5 HOH O . ? HOH A 262 . ? 1_555 ? 50 BC3 5 HOH O . ? HOH A 267 . ? 1_555 ? 51 BC4 6 SER A 68 ? SER A 65 . ? 1_555 ? 52 BC4 6 LEU A 71 ? LEU A 68 . ? 1_555 ? 53 BC4 6 HOH O . ? HOH A 278 . ? 1_555 ? 54 BC4 6 HOH O . ? HOH A 279 . ? 1_555 ? 55 BC4 6 HOH O . ? HOH A 304 . ? 1_555 ? 56 BC4 6 HOH O . ? HOH A 305 . ? 1_555 ? # _atom_sites.entry_id 3PEB _atom_sites.fract_transf_matrix[1][1] 0.014184 _atom_sites.fract_transf_matrix[1][2] 0.008189 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016378 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006235 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 SER 5 2 2 SER SER A . n A 1 6 LYS 6 3 3 LYS LYS A . n A 1 7 LEU 7 4 4 LEU LEU A . n A 1 8 ASP 8 5 5 ASP ASP A . n A 1 9 ARG 9 6 6 ARG ARG A . n A 1 10 ILE 10 7 7 ILE ILE A . n A 1 11 ARG 11 8 8 ARG ARG A . n A 1 12 HIS 12 9 9 HIS HIS A . n A 1 13 PHE 13 10 10 PHE PHE A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 ASN 15 12 12 ASN ASN A . n A 1 16 GLU 16 13 13 GLU GLU A . n A 1 17 ASN 17 14 14 ASN ASN A . n A 1 18 LYS 18 15 15 LYS LYS A . n A 1 19 SER 19 16 16 SER SER A . n A 1 20 GLY 20 17 17 GLY GLY A . n A 1 21 LEU 21 18 18 LEU LEU A . n A 1 22 ALA 22 19 19 ALA ALA A . n A 1 23 ILE 23 20 20 ILE ILE A . n A 1 24 VAL 24 21 21 VAL VAL A . n A 1 25 SER 25 22 22 SER SER A . n A 1 26 ASP 26 23 23 ASP ASP A . n A 1 27 PRO 27 24 24 PRO PRO A . n A 1 28 VAL 28 25 25 VAL VAL A . n A 1 29 THR 29 26 26 THR THR A . n A 1 30 VAL 30 27 27 VAL VAL A . n A 1 31 ASN 31 28 28 ASN ASN A . n A 1 32 TYR 32 29 29 TYR TYR A . n A 1 33 LEU 33 30 30 LEU LEU A . n A 1 34 THR 34 31 31 THR THR A . n A 1 35 GLY 35 32 32 GLY GLY A . n A 1 36 PHE 36 33 33 PHE PHE A . n A 1 37 ASP 37 34 34 ASP ASP A . n A 1 38 CYS 38 35 35 CYS CYS A . n A 1 39 ASP 39 36 36 ASP ASP A . n A 1 40 PRO 40 37 37 PRO PRO A . n A 1 41 HIS 41 38 38 HIS HIS A . n A 1 42 GLU 42 39 39 GLU GLU A . n A 1 43 ARG 43 40 40 ARG ARG A . n A 1 44 GLN 44 41 41 GLN GLN A . n A 1 45 MSE 45 42 42 MSE MSE A . n A 1 46 PHE 46 43 43 PHE PHE A . n A 1 47 LEU 47 44 44 LEU LEU A . n A 1 48 PHE 48 45 45 PHE PHE A . n A 1 49 VAL 49 46 46 VAL VAL A . n A 1 50 TYR 50 47 47 TYR TYR A . n A 1 51 GLU 51 48 48 GLU GLU A . n A 1 52 ASN 52 49 49 ASN ASN A . n A 1 53 ARG 53 50 50 ARG ARG A . n A 1 54 GLU 54 51 51 GLU GLU A . n A 1 55 PRO 55 52 52 PRO PRO A . n A 1 56 ALA 56 53 53 ALA ALA A . n A 1 57 LEU 57 54 54 LEU LEU A . n A 1 58 PHE 58 55 55 PHE PHE A . n A 1 59 VAL 59 56 56 VAL VAL A . n A 1 60 PRO 60 57 57 PRO PRO A . n A 1 61 ALA 61 58 58 ALA ALA A . n A 1 62 LEU 62 59 59 LEU LEU A . n A 1 63 GLU 63 60 60 GLU GLU A . n A 1 64 VAL 64 61 61 VAL VAL A . n A 1 65 ALA 65 62 62 ALA ALA A . n A 1 66 ARG 66 63 63 ARG ARG A . n A 1 67 ALA 67 64 64 ALA ALA A . n A 1 68 SER 68 65 65 SER SER A . n A 1 69 SER 69 66 66 SER SER A . n A 1 70 VAL 70 67 67 VAL VAL A . n A 1 71 LEU 71 68 68 LEU LEU A . n A 1 72 ASP 72 69 69 ASP ASP A . n A 1 73 PHE 73 70 70 PHE PHE A . n A 1 74 PRO 74 71 71 PRO PRO A . n A 1 75 VAL 75 72 72 VAL VAL A . n A 1 76 PHE 76 73 73 PHE PHE A . n A 1 77 GLY 77 74 74 GLY GLY A . n A 1 78 TYR 78 75 75 TYR TYR A . n A 1 79 VAL 79 76 76 VAL VAL A . n A 1 80 ASP 80 77 77 ASP ASP A . n A 1 81 SER 81 78 78 SER SER A . n A 1 82 GLU 82 79 79 GLU GLU A . n A 1 83 ASN 83 80 80 ASN ASN A . n A 1 84 PRO 84 81 81 PRO PRO A . n A 1 85 TRP 85 82 82 TRP TRP A . n A 1 86 GLN 86 83 83 GLN GLN A . n A 1 87 LYS 87 84 84 LYS LYS A . n A 1 88 ILE 88 85 85 ILE ILE A . n A 1 89 LYS 89 86 86 LYS LYS A . n A 1 90 ALA 90 87 87 ALA ALA A . n A 1 91 GLY 91 88 88 GLY GLY A . n A 1 92 LEU 92 89 89 LEU LEU A . n A 1 93 ALA 93 90 90 ALA ALA A . n A 1 94 SER 94 91 91 SER SER A . n A 1 95 THR 95 92 92 THR THR A . n A 1 96 ASP 96 93 93 ASP ASP A . n A 1 97 ILE 97 94 94 ILE ILE A . n A 1 98 PRO 98 95 95 PRO PRO A . n A 1 99 ILE 99 96 96 ILE ILE A . n A 1 100 ILE 100 97 97 ILE ILE A . n A 1 101 TYR 101 98 98 TYR TYR A . n A 1 102 ALA 102 99 99 ALA ALA A . n A 1 103 GLU 103 100 100 GLU GLU A . n A 1 104 PHE 104 101 101 PHE PHE A . n A 1 105 ASP 105 102 102 ASP ASP A . n A 1 106 ASN 106 103 103 ASN ASN A . n A 1 107 LEU 107 104 104 LEU LEU A . n A 1 108 ASN 108 105 105 ASN ASN A . n A 1 109 VAL 109 106 106 VAL VAL A . n A 1 110 THR 110 107 107 THR THR A . n A 1 111 LYS 111 108 108 LYS LYS A . n A 1 112 PHE 112 109 109 PHE PHE A . n A 1 113 GLN 113 110 110 GLN GLN A . n A 1 114 GLY 114 111 111 GLY GLY A . n A 1 115 LEU 115 112 112 LEU LEU A . n A 1 116 GLN 116 113 113 GLN GLN A . n A 1 117 THR 117 114 114 THR THR A . n A 1 118 VAL 118 115 115 VAL VAL A . n A 1 119 PHE 119 116 116 PHE PHE A . n A 1 120 GLU 120 117 117 GLU GLU A . n A 1 121 GLY 121 118 118 GLY GLY A . n A 1 122 ARG 122 119 119 ARG ARG A . n A 1 123 PHE 123 120 120 PHE PHE A . n A 1 124 GLU 124 121 121 GLU GLU A . n A 1 125 ASN 125 122 122 ASN ASN A . n A 1 126 LEU 126 123 123 LEU LEU A . n A 1 127 THR 127 124 124 THR THR A . n A 1 128 PRO 128 125 125 PRO PRO A . n A 1 129 PHE 129 126 126 PHE PHE A . n A 1 130 ILE 130 127 127 ILE ILE A . n A 1 131 HIS 131 128 128 HIS HIS A . n A 1 132 LYS 132 129 129 LYS LYS A . n A 1 133 MSE 133 130 130 MSE MSE A . n A 1 134 ARG 134 131 131 ARG ARG A . n A 1 135 VAL 135 132 ? ? ? A . n A 1 136 ILE 136 133 ? ? ? A . n A 1 137 LYS 137 134 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NHE 1 135 1 NHE NHE A . C 3 EDO 1 136 1 EDO EDO A . D 3 EDO 1 137 1 EDO EDO A . E 3 EDO 1 138 1 EDO EDO A . F 3 EDO 1 139 1 EDO EDO A . G 3 EDO 1 140 1 EDO EDO A . H 3 EDO 1 141 1 EDO EDO A . I 3 EDO 1 142 1 EDO EDO A . J 3 EDO 1 143 1 EDO EDO A . K 3 EDO 1 144 1 EDO EDO A . L 3 EDO 1 145 1 EDO EDO A . M 4 NA 1 146 1 NA NA A . N 4 NA 1 147 1 NA NA A . O 5 HOH 1 148 148 HOH HOH A . O 5 HOH 2 149 149 HOH HOH A . O 5 HOH 3 150 150 HOH HOH A . O 5 HOH 4 151 151 HOH HOH A . O 5 HOH 5 152 152 HOH HOH A . O 5 HOH 6 153 153 HOH HOH A . O 5 HOH 7 154 154 HOH HOH A . O 5 HOH 8 155 155 HOH HOH A . O 5 HOH 9 156 156 HOH HOH A . O 5 HOH 10 157 157 HOH HOH A . O 5 HOH 11 158 158 HOH HOH A . O 5 HOH 12 159 159 HOH HOH A . O 5 HOH 13 160 160 HOH HOH A . O 5 HOH 14 161 1 HOH HOH A . O 5 HOH 15 162 2 HOH HOH A . O 5 HOH 16 163 3 HOH HOH A . O 5 HOH 17 164 4 HOH HOH A . O 5 HOH 18 165 5 HOH HOH A . O 5 HOH 19 166 6 HOH HOH A . O 5 HOH 20 167 7 HOH HOH A . O 5 HOH 21 168 8 HOH HOH A . O 5 HOH 22 169 9 HOH HOH A . O 5 HOH 23 170 10 HOH HOH A . O 5 HOH 24 171 11 HOH HOH A . O 5 HOH 25 172 12 HOH HOH A . O 5 HOH 26 173 13 HOH HOH A . O 5 HOH 27 174 14 HOH HOH A . O 5 HOH 28 175 15 HOH HOH A . O 5 HOH 29 176 16 HOH HOH A . O 5 HOH 30 177 17 HOH HOH A . O 5 HOH 31 178 18 HOH HOH A . O 5 HOH 32 179 19 HOH HOH A . O 5 HOH 33 180 20 HOH HOH A . O 5 HOH 34 181 21 HOH HOH A . O 5 HOH 35 182 22 HOH HOH A . O 5 HOH 36 183 23 HOH HOH A . O 5 HOH 37 184 24 HOH HOH A . O 5 HOH 38 185 25 HOH HOH A . O 5 HOH 39 186 26 HOH HOH A . O 5 HOH 40 187 27 HOH HOH A . O 5 HOH 41 188 28 HOH HOH A . O 5 HOH 42 189 29 HOH HOH A . O 5 HOH 43 190 30 HOH HOH A . O 5 HOH 44 191 31 HOH HOH A . O 5 HOH 45 192 32 HOH HOH A . O 5 HOH 46 193 33 HOH HOH A . O 5 HOH 47 194 34 HOH HOH A . O 5 HOH 48 195 35 HOH HOH A . O 5 HOH 49 196 36 HOH HOH A . O 5 HOH 50 197 37 HOH HOH A . O 5 HOH 51 198 38 HOH HOH A . O 5 HOH 52 199 39 HOH HOH A . O 5 HOH 53 200 40 HOH HOH A . O 5 HOH 54 201 41 HOH HOH A . O 5 HOH 55 202 42 HOH HOH A . O 5 HOH 56 203 43 HOH HOH A . O 5 HOH 57 204 44 HOH HOH A . O 5 HOH 58 205 45 HOH HOH A . O 5 HOH 59 206 46 HOH HOH A . O 5 HOH 60 207 47 HOH HOH A . O 5 HOH 61 208 48 HOH HOH A . O 5 HOH 62 209 49 HOH HOH A . O 5 HOH 63 210 50 HOH HOH A . O 5 HOH 64 211 51 HOH HOH A . O 5 HOH 65 212 52 HOH HOH A . O 5 HOH 66 213 53 HOH HOH A . O 5 HOH 67 214 54 HOH HOH A . O 5 HOH 68 215 55 HOH HOH A . O 5 HOH 69 216 56 HOH HOH A . O 5 HOH 70 217 57 HOH HOH A . O 5 HOH 71 218 58 HOH HOH A . O 5 HOH 72 219 59 HOH HOH A . O 5 HOH 73 220 60 HOH HOH A . O 5 HOH 74 221 61 HOH HOH A . O 5 HOH 75 222 62 HOH HOH A . O 5 HOH 76 223 63 HOH HOH A . O 5 HOH 77 224 64 HOH HOH A . O 5 HOH 78 225 65 HOH HOH A . O 5 HOH 79 226 66 HOH HOH A . O 5 HOH 80 227 67 HOH HOH A . O 5 HOH 81 228 68 HOH HOH A . O 5 HOH 82 229 69 HOH HOH A . O 5 HOH 83 230 70 HOH HOH A . O 5 HOH 84 231 71 HOH HOH A . O 5 HOH 85 232 72 HOH HOH A . O 5 HOH 86 233 73 HOH HOH A . O 5 HOH 87 234 74 HOH HOH A . O 5 HOH 88 235 75 HOH HOH A . O 5 HOH 89 236 76 HOH HOH A . O 5 HOH 90 237 77 HOH HOH A . O 5 HOH 91 238 78 HOH HOH A . O 5 HOH 92 239 79 HOH HOH A . O 5 HOH 93 240 80 HOH HOH A . O 5 HOH 94 241 81 HOH HOH A . O 5 HOH 95 242 82 HOH HOH A . O 5 HOH 96 243 83 HOH HOH A . O 5 HOH 97 244 84 HOH HOH A . O 5 HOH 98 245 85 HOH HOH A . O 5 HOH 99 246 86 HOH HOH A . O 5 HOH 100 247 87 HOH HOH A . O 5 HOH 101 248 88 HOH HOH A . O 5 HOH 102 249 89 HOH HOH A . O 5 HOH 103 250 90 HOH HOH A . O 5 HOH 104 251 91 HOH HOH A . O 5 HOH 105 252 92 HOH HOH A . O 5 HOH 106 253 93 HOH HOH A . O 5 HOH 107 254 94 HOH HOH A . O 5 HOH 108 255 95 HOH HOH A . O 5 HOH 109 256 96 HOH HOH A . O 5 HOH 110 257 97 HOH HOH A . O 5 HOH 111 258 98 HOH HOH A . O 5 HOH 112 259 99 HOH HOH A . O 5 HOH 113 260 100 HOH HOH A . O 5 HOH 114 261 101 HOH HOH A . O 5 HOH 115 262 102 HOH HOH A . O 5 HOH 116 263 103 HOH HOH A . O 5 HOH 117 264 104 HOH HOH A . O 5 HOH 118 265 105 HOH HOH A . O 5 HOH 119 266 106 HOH HOH A . O 5 HOH 120 267 107 HOH HOH A . O 5 HOH 121 268 108 HOH HOH A . O 5 HOH 122 269 109 HOH HOH A . O 5 HOH 123 270 110 HOH HOH A . O 5 HOH 124 271 111 HOH HOH A . O 5 HOH 125 272 112 HOH HOH A . O 5 HOH 126 273 113 HOH HOH A . O 5 HOH 127 274 114 HOH HOH A . O 5 HOH 128 275 115 HOH HOH A . O 5 HOH 129 276 116 HOH HOH A . O 5 HOH 130 277 117 HOH HOH A . O 5 HOH 131 278 118 HOH HOH A . O 5 HOH 132 279 119 HOH HOH A . O 5 HOH 133 280 120 HOH HOH A . O 5 HOH 134 281 121 HOH HOH A . O 5 HOH 135 282 122 HOH HOH A . O 5 HOH 136 283 123 HOH HOH A . O 5 HOH 137 284 124 HOH HOH A . O 5 HOH 138 285 125 HOH HOH A . O 5 HOH 139 286 126 HOH HOH A . O 5 HOH 140 287 127 HOH HOH A . O 5 HOH 141 288 128 HOH HOH A . O 5 HOH 142 289 129 HOH HOH A . O 5 HOH 143 290 130 HOH HOH A . O 5 HOH 144 291 131 HOH HOH A . O 5 HOH 145 292 132 HOH HOH A . O 5 HOH 146 293 133 HOH HOH A . O 5 HOH 147 294 134 HOH HOH A . O 5 HOH 148 295 135 HOH HOH A . O 5 HOH 149 296 136 HOH HOH A . O 5 HOH 150 297 137 HOH HOH A . O 5 HOH 151 298 138 HOH HOH A . O 5 HOH 152 299 139 HOH HOH A . O 5 HOH 153 300 140 HOH HOH A . O 5 HOH 154 301 141 HOH HOH A . O 5 HOH 155 302 142 HOH HOH A . O 5 HOH 156 303 143 HOH HOH A . O 5 HOH 157 304 144 HOH HOH A . O 5 HOH 158 305 145 HOH HOH A . O 5 HOH 159 306 146 HOH HOH A . O 5 HOH 160 307 147 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 45 A MSE 42 ? MET SELENOMETHIONINE 3 A MSE 133 A MSE 130 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 151 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id O _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A PHE 119 ? A PHE 116 ? 1_555 NA ? M NA . ? A NA 146 ? 1_555 O ? O HOH . ? A HOH 203 ? 1_555 172.7 ? 2 O ? A PHE 119 ? A PHE 116 ? 1_555 NA ? M NA . ? A NA 146 ? 1_555 O ? O HOH . ? A HOH 267 ? 1_555 81.1 ? 3 O ? O HOH . ? A HOH 203 ? 1_555 NA ? M NA . ? A NA 146 ? 1_555 O ? O HOH . ? A HOH 267 ? 1_555 104.5 ? 4 O ? A PHE 119 ? A PHE 116 ? 1_555 NA ? M NA . ? A NA 146 ? 1_555 O ? O HOH . ? A HOH 262 ? 1_555 86.2 ? 5 O ? O HOH . ? A HOH 203 ? 1_555 NA ? M NA . ? A NA 146 ? 1_555 O ? O HOH . ? A HOH 262 ? 1_555 89.7 ? 6 O ? O HOH . ? A HOH 267 ? 1_555 NA ? M NA . ? A NA 146 ? 1_555 O ? O HOH . ? A HOH 262 ? 1_555 159.5 ? 7 O ? A PHE 119 ? A PHE 116 ? 1_555 NA ? M NA . ? A NA 146 ? 1_555 O ? A GLN 116 ? A GLN 113 ? 1_555 89.3 ? 8 O ? O HOH . ? A HOH 203 ? 1_555 NA ? M NA . ? A NA 146 ? 1_555 O ? A GLN 116 ? A GLN 113 ? 1_555 84.0 ? 9 O ? O HOH . ? A HOH 267 ? 1_555 NA ? M NA . ? A NA 146 ? 1_555 O ? A GLN 116 ? A GLN 113 ? 1_555 116.5 ? 10 O ? O HOH . ? A HOH 262 ? 1_555 NA ? M NA . ? A NA 146 ? 1_555 O ? A GLN 116 ? A GLN 113 ? 1_555 79.1 ? 11 O ? O HOH . ? A HOH 304 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? A LEU 71 ? A LEU 68 ? 1_555 170.7 ? 12 O ? O HOH . ? A HOH 304 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? A SER 68 ? A SER 65 ? 1_555 82.8 ? 13 O ? A LEU 71 ? A LEU 68 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? A SER 68 ? A SER 65 ? 1_555 92.1 ? 14 O ? O HOH . ? A HOH 304 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? O HOH . ? A HOH 278 ? 1_555 100.7 ? 15 O ? A LEU 71 ? A LEU 68 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? O HOH . ? A HOH 278 ? 1_555 87.8 ? 16 O ? A SER 68 ? A SER 65 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? O HOH . ? A HOH 278 ? 1_555 100.5 ? 17 O ? O HOH . ? A HOH 304 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? O HOH . ? A HOH 305 ? 1_555 88.1 ? 18 O ? A LEU 71 ? A LEU 68 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? O HOH . ? A HOH 305 ? 1_555 95.7 ? 19 O ? A SER 68 ? A SER 65 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? O HOH . ? A HOH 305 ? 1_555 167.3 ? 20 O ? O HOH . ? A HOH 278 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? O HOH . ? A HOH 305 ? 1_555 89.8 ? 21 O ? O HOH . ? A HOH 304 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? O HOH . ? A HOH 279 ? 1_555 89.8 ? 22 O ? A LEU 71 ? A LEU 68 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? O HOH . ? A HOH 279 ? 1_555 82.0 ? 23 O ? A SER 68 ? A SER 65 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? O HOH . ? A HOH 279 ? 1_555 85.0 ? 24 O ? O HOH . ? A HOH 278 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? O HOH . ? A HOH 279 ? 1_555 168.6 ? 25 O ? O HOH . ? A HOH 305 ? 1_555 NA ? N NA . ? A NA 147 ? 1_555 O ? O HOH . ? A HOH 279 ? 1_555 86.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-11-03 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.850 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 20449 _diffrn_reflns.pdbx_Rmerge_I_obs 0.074 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.59 _diffrn_reflns.av_sigmaI_over_netI 64.13 _diffrn_reflns.pdbx_redundancy 23.80 _diffrn_reflns.pdbx_percent_possible_obs 99.40 _diffrn_reflns.number 486484 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.02 50.00 ? ? 0.066 ? 5.531 22.10 98.80 1 3.99 5.02 ? ? 0.054 ? 3.181 25.10 99.80 1 3.48 3.99 ? ? 0.054 ? 2.762 25.80 99.90 1 3.16 3.48 ? ? 0.061 ? 2.304 26.10 100.00 1 2.94 3.16 ? ? 0.071 ? 1.948 26.00 100.00 1 2.76 2.94 ? ? 0.077 ? 1.614 25.80 100.00 1 2.63 2.76 ? ? 0.090 ? 1.369 25.50 100.00 1 2.51 2.63 ? ? 0.102 ? 1.254 25.50 100.00 1 2.41 2.51 ? ? 0.122 ? 1.163 25.20 100.00 1 2.33 2.41 ? ? 0.130 ? 1.057 25.10 100.00 1 2.26 2.33 ? ? 0.151 ? 1.004 25.10 100.00 1 2.19 2.26 ? ? 0.170 ? 0.956 24.90 100.00 1 2.14 2.19 ? ? 0.192 ? 0.915 25.00 100.00 1 2.08 2.14 ? ? 0.233 ? 0.847 25.10 100.00 1 2.04 2.08 ? ? 0.285 ? 0.816 25.00 100.00 1 1.99 2.04 ? ? 0.324 ? 0.780 24.10 100.00 1 1.95 1.99 ? ? 0.418 ? 0.720 21.90 100.00 1 1.92 1.95 ? ? 0.511 ? 0.673 19.00 99.00 1 1.88 1.92 ? ? 0.658 ? 0.658 16.80 96.60 1 1.85 1.88 ? ? 0.782 ? 0.628 15.40 94.60 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 11.7707 _pdbx_refine_tls.origin_y 19.5791 _pdbx_refine_tls.origin_z -5.1925 _pdbx_refine_tls.T[1][1] 0.0809 _pdbx_refine_tls.T[2][2] 0.0191 _pdbx_refine_tls.T[3][3] 0.0259 _pdbx_refine_tls.T[1][2] -0.0180 _pdbx_refine_tls.T[1][3] 0.0276 _pdbx_refine_tls.T[2][3] 0.0058 _pdbx_refine_tls.L[1][1] 2.1761 _pdbx_refine_tls.L[2][2] 1.9064 _pdbx_refine_tls.L[3][3] 2.7434 _pdbx_refine_tls.L[1][2] -0.1526 _pdbx_refine_tls.L[1][3] -0.7847 _pdbx_refine_tls.L[2][3] 0.6892 _pdbx_refine_tls.S[1][1] -0.0751 _pdbx_refine_tls.S[2][2] 0.0128 _pdbx_refine_tls.S[3][3] 0.0623 _pdbx_refine_tls.S[1][2] 0.0301 _pdbx_refine_tls.S[1][3] -0.0302 _pdbx_refine_tls.S[2][3] 0.0392 _pdbx_refine_tls.S[2][1] 0.2011 _pdbx_refine_tls.S[3][1] -0.0232 _pdbx_refine_tls.S[3][2] 0.0482 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -10 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 9999 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _pdbx_phasing_MAD_set.id 1 _pdbx_phasing_MAD_set.d_res_high 1.90 _pdbx_phasing_MAD_set.d_res_low 50.00 _pdbx_phasing_MAD_set.reflns_acentric 15730 _pdbx_phasing_MAD_set.loc_acentric 0.100 _pdbx_phasing_MAD_set.power_acentric 0.000 _pdbx_phasing_MAD_set.R_cullis_acentric 1.820 _pdbx_phasing_MAD_set.reflns_centric 3558 _pdbx_phasing_MAD_set.loc_centric 0.100 _pdbx_phasing_MAD_set.power_centric 0.000 _pdbx_phasing_MAD_set.R_cullis_centric 1.000 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.loc_acentric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.loc_centric _pdbx_phasing_MAD_set_shell.power_centric _pdbx_phasing_MAD_set_shell.R_cullis_centric 1 12.01 50.00 30 0.400 0.000 1.530 69 0.200 0.000 1.000 1 6.82 12.01 217 0.300 0.000 1.640 181 0.200 0.000 1.000 1 4.76 6.82 592 0.300 0.000 1.570 290 0.100 0.000 1.000 1 3.66 4.76 1145 0.200 0.000 1.080 393 0.200 0.000 1.000 1 2.97 3.66 1887 0.100 0.000 1.340 498 0.100 0.000 1.000 1 2.50 2.97 2801 0.100 0.000 2.360 613 0.000 0.000 1.000 1 2.16 2.50 3894 0.100 0.000 3.010 718 0.000 0.000 1.000 1 1.90 2.16 5164 0.000 0.000 4.760 796 0.000 0.000 1.000 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso _pdbx_phasing_MAD_set_site.occupancy_iso _pdbx_phasing_MAD_set_site.occupancy 1 Se 0.136 0.765 0.054 37.8733 0.000 4.066 2 Se 0.068 0.631 -0.036 54.8932 0.000 3.432 3 Se 0.021 0.673 -0.085 105.2141 0.000 3.171 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric 12.01 50.00 99 0.165 69 0.000 30 0.544 6.82 12.01 398 0.359 181 0.000 217 0.658 4.76 6.82 882 0.405 290 0.000 592 0.604 3.66 4.76 1538 0.447 393 0.000 1145 0.601 2.97 3.66 2385 0.448 498 0.000 1887 0.566 2.50 2.97 3414 0.398 613 0.000 2801 0.485 2.16 2.50 4612 0.293 718 0.000 3894 0.347 1.90 2.16 5960 0.135 796 0.000 5164 0.156 # _pdbx_phasing_dm.entry_id 3PEB _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 20352 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 6.800 100.000 73.400 ? ? ? 0.753 ? ? 506 5.320 6.800 63.900 ? ? ? 0.860 ? ? 504 4.610 5.320 59.600 ? ? ? 0.880 ? ? 511 4.160 4.610 65.200 ? ? ? 0.894 ? ? 509 3.840 4.160 57.800 ? ? ? 0.889 ? ? 524 3.590 3.840 58.600 ? ? ? 0.898 ? ? 541 3.380 3.590 60.400 ? ? ? 0.884 ? ? 579 3.200 3.380 61.600 ? ? ? 0.895 ? ? 608 3.050 3.200 60.800 ? ? ? 0.892 ? ? 648 2.920 3.050 59.100 ? ? ? 0.880 ? ? 660 2.800 2.920 64.500 ? ? ? 0.886 ? ? 702 2.700 2.800 59.900 ? ? ? 0.874 ? ? 722 2.600 2.700 60.300 ? ? ? 0.883 ? ? 740 2.520 2.600 61.200 ? ? ? 0.892 ? ? 756 2.440 2.520 61.900 ? ? ? 0.878 ? ? 799 2.380 2.440 61.300 ? ? ? 0.885 ? ? 815 2.310 2.380 61.400 ? ? ? 0.890 ? ? 835 2.250 2.310 67.400 ? ? ? 0.880 ? ? 849 2.200 2.250 67.000 ? ? ? 0.898 ? ? 856 2.150 2.200 62.000 ? ? ? 0.886 ? ? 894 2.100 2.150 67.100 ? ? ? 0.873 ? ? 909 2.050 2.100 69.700 ? ? ? 0.869 ? ? 939 2.010 2.050 72.000 ? ? ? 0.884 ? ? 925 1.970 2.010 75.900 ? ? ? 0.862 ? ? 976 1.940 1.970 76.900 ? ? ? 0.844 ? ? 974 1.900 1.940 76.800 ? ? ? 0.808 ? ? 976 1.850 1.900 88.500 ? ? ? 0.751 ? ? 1095 # _phasing.method SAD # _phasing_MAD.entry_id 3PEB _phasing_MAD.pdbx_d_res_high 1.90 _phasing_MAD.pdbx_d_res_low 50.00 _phasing_MAD.pdbx_reflns 19288 _phasing_MAD.pdbx_fom 0.300 _phasing_MAD.pdbx_reflns_centric 3558 _phasing_MAD.pdbx_fom_centric 0.000 _phasing_MAD.pdbx_reflns_acentric 15730 _phasing_MAD.pdbx_fom_acentric 0.368 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MLPHARE . ? other 'Eleanor J. Dodson' ccp4@ccp4.ac.uk phasing http://www.ccp4.ac.uk/dist/html/mlphare.html Fortran_77 ? 4 DM 6.1 ? program 'Kevin Cowtan' kowtan@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/dm.html Fortran_77 ? 5 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 8 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 9 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 10 HKL-3000 . ? ? ? ? phasing ? ? ? 11 SHELXD . ? ? ? ? phasing ? ? ? 12 SHELXE . ? ? ? ? 'model building' ? ? ? 13 SOLVE . ? ? ? ? phasing ? ? ? 14 RESOLVE . ? ? ? ? phasing ? ? ? 15 ARP/wARP . ? ? ? ? 'model building' ? ? ? 16 CCP4 . ? ? ? ? phasing ? ? ? 17 O . ? ? ? ? 'model building' ? ? ? 18 Coot . ? ? ? ? 'model building' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NE2 A GLN 110 ? ? O A HOH 154 ? ? 2.07 2 1 O1 A NHE 135 ? ? O A HOH 155 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 38 ? ? 58.43 -115.54 2 1 HIS A 38 ? ? 58.26 -115.38 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A VAL 132 ? A VAL 135 4 1 Y 1 A ILE 133 ? A ILE 136 5 1 Y 1 A LYS 134 ? A LYS 137 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' NHE 3 1,2-ETHANEDIOL EDO 4 'SODIUM ION' NA 5 water HOH #