HEADER RNA BINDING PROTEIN 27-OCT-10 3PEN TITLE STRUCTURE OF ARCHAEAL INITIATION FACTOR AIF2GAMMA SUBUNIT DELTA 37-47 TITLE 2 FROM SULFOLOBUS SOLFATARICUS IN THE GDP-BOUND FORM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR 2 SUBUNIT GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AIF2-GAMMA, EIF-2-GAMMA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: EIF2G, SSO0412; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS RNA, MET, ARCHAEAL PROTEINS, BINDING SITES, PROKARYOTIC INIT FACTOR- KEYWDS 2 2, GUANOSINE DIPHOSPHATE, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.I.ARKHIPOVA,A.M.LAZOPULO,S.M.LAZOPULO,M.B.GARBER,O.S.NIKONOV, AUTHOR 2 S.V.NIKONOV,A.G.GABDOULKHAKOV REVDAT 2 06-SEP-23 3PEN 1 REMARK SEQADV LINK REVDAT 1 04-MAY-11 3PEN 0 JRNL AUTH V.I.ARKHIPOVA,A.M.LAZOPULO,S.M.LAZOPULO,M.B.GARBER, JRNL AUTH 2 O.S.NIKONOV,S.V.NIKONOV,A.G.GABDOULKHAKOV JRNL TITL STRUCTURE OF ARCHAEAL INITIATION FACTOR AIF2GAMMA SUBUNIT JRNL TITL 2 FROM SULFOLOBUS SOLFATARICUS IN THE GDP-BOUND FORM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.0985 - 5.8611 1.00 2792 147 0.1685 0.1704 REMARK 3 2 5.8611 - 4.6746 1.00 2734 144 0.1484 0.1994 REMARK 3 3 4.6746 - 4.0903 1.00 2703 142 0.1368 0.1514 REMARK 3 4 4.0903 - 3.7193 1.00 2697 142 0.1474 0.1786 REMARK 3 5 3.7193 - 3.4544 1.00 2699 142 0.1627 0.1877 REMARK 3 6 3.4544 - 3.2518 1.00 2686 141 0.1761 0.1920 REMARK 3 7 3.2518 - 3.0897 1.00 2685 142 0.1997 0.2402 REMARK 3 8 3.0897 - 2.9557 1.00 2657 140 0.2172 0.2249 REMARK 3 9 2.9557 - 2.8423 1.00 2705 142 0.2236 0.2602 REMARK 3 10 2.8423 - 2.7445 1.00 2672 140 0.2230 0.2998 REMARK 3 11 2.7445 - 2.6589 1.00 2688 142 0.2303 0.2664 REMARK 3 12 2.6589 - 2.5831 1.00 2668 140 0.2324 0.2551 REMARK 3 13 2.5831 - 2.5152 1.00 2682 142 0.2325 0.2695 REMARK 3 14 2.5152 - 2.4540 1.00 2665 140 0.2352 0.2518 REMARK 3 15 2.4540 - 2.3983 1.00 2664 140 0.2477 0.3075 REMARK 3 16 2.3983 - 2.3474 1.00 2668 140 0.2550 0.2763 REMARK 3 17 2.3474 - 2.3005 1.00 2672 141 0.2745 0.3063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 45.12 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3239 REMARK 3 ANGLE : 1.287 4398 REMARK 3 CHIRALITY : 0.095 513 REMARK 3 PLANARITY : 0.004 547 REMARK 3 DIHEDRAL : 20.771 1210 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PEN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 192.6 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48144 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 3.750 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.77 REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2PMD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M SODIUM FORMATE, 44MM SODIUM REMARK 280 CACODYLATE, GDPNP, GDP, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 301K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 93.56000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 93.56000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 93.56000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 93.56000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 93.56000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 93.56000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 93.56000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 93.56000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 93.56000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 93.56000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 93.56000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 93.56000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 93.56000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 93.56000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 93.56000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 93.56000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 93.56000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 93.56000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 93.56000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 93.56000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 93.56000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 93.56000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 93.56000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 93.56000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 93.56000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 93.56000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 93.56000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 93.56000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 93.56000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 93.56000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 93.56000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 93.56000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 93.56000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 93.56000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 93.56000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 93.56000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 419 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 23 OG1 REMARK 620 2 GDP A 416 O1B 75.3 REMARK 620 3 HOH A 574 O 75.1 74.8 REMARK 620 4 HOH A 589 O 80.6 96.4 155.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 417 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 54 OG1 REMARK 620 2 THR A 70 O 88.0 REMARK 620 3 HOH A 591 O 91.9 96.8 REMARK 620 4 HOH A 594 O 169.4 97.8 96.1 REMARK 620 5 HOH A 603 O 91.9 170.0 93.1 80.8 REMARK 620 6 HOH A 611 O 83.5 84.4 175.3 88.3 85.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 420 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 66 O REMARK 620 2 TYR A 68 O 90.5 REMARK 620 3 ASP A 192 OD2 104.2 103.2 REMARK 620 4 HOH A 581 O 102.5 146.0 103.7 REMARK 620 5 HOH A 617 O 172.8 83.1 80.6 81.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 421 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 111 O REMARK 620 2 HOH A 588 O 83.6 REMARK 620 3 HOH A 601 O 95.3 84.2 REMARK 620 4 HOH A 610 O 94.2 160.8 76.9 REMARK 620 5 HOH A 615 O 177.3 94.4 86.3 88.2 REMARK 620 6 HOH A 616 O 84.7 107.6 168.0 91.1 94.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 418 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 151 O REMARK 620 2 VAL A 154 O 75.1 REMARK 620 3 HOH A 596 O 113.5 112.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 421 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PMD RELATED DB: PDB REMARK 900 AIF2GAMMA IN COMPLEX WITH GDP AND GPP(NH)P REMARK 900 RELATED ID: 2PLF RELATED DB: PDB REMARK 900 AIF2GAMMA IN THE NUCLEOTIDE-FREE FORM DBREF 3PEN A 2 415 UNP Q980A5 IF2G_SULSO 2 415 SEQADV 3PEN A UNP Q980A5 HIS 37 DELETION SEQADV 3PEN A UNP Q980A5 SER 38 DELETION SEQADV 3PEN A UNP Q980A5 GLU 39 DELETION SEQADV 3PEN A UNP Q980A5 GLU 40 DELETION SEQADV 3PEN A UNP Q980A5 LEU 41 DELETION SEQADV 3PEN A UNP Q980A5 LYS 42 DELETION SEQADV 3PEN A UNP Q980A5 ARG 43 DELETION SEQADV 3PEN A UNP Q980A5 GLY 44 DELETION SEQADV 3PEN A UNP Q980A5 MET 45 DELETION SEQADV 3PEN A UNP Q980A5 THR 46 DELETION SEQADV 3PEN A UNP Q980A5 ILE 47 DELETION SEQRES 1 A 403 ALA TRP PRO LYS VAL GLN PRO GLU VAL ASN ILE GLY VAL SEQRES 2 A 403 VAL GLY HIS VAL ASP HIS GLY LYS THR THR LEU VAL GLN SEQRES 3 A 403 ALA ILE THR GLY ILE TRP THR SER LYS LYS LEU GLY TYR SEQRES 4 A 403 ALA GLU THR ASN ILE GLY VAL CYS GLU SER CYS LYS LYS SEQRES 5 A 403 PRO GLU ALA TYR VAL THR GLU PRO SER CYS LYS SER CYS SEQRES 6 A 403 GLY SER ASP ASP GLU PRO LYS PHE LEU ARG ARG ILE SER SEQRES 7 A 403 PHE ILE ASP ALA PRO GLY HIS GLU VAL LEU MET ALA THR SEQRES 8 A 403 MET LEU SER GLY ALA ALA LEU MET ASP GLY ALA ILE LEU SEQRES 9 A 403 VAL VAL ALA ALA ASN GLU PRO PHE PRO GLN PRO GLN THR SEQRES 10 A 403 ARG GLU HIS PHE VAL ALA LEU GLY ILE ILE GLY VAL LYS SEQRES 11 A 403 ASN LEU ILE ILE VAL GLN ASN LYS VAL ASP VAL VAL SER SEQRES 12 A 403 LYS GLU GLU ALA LEU SER GLN TYR ARG GLN ILE LYS GLN SEQRES 13 A 403 PHE THR LYS GLY THR TRP ALA GLU ASN VAL PRO ILE ILE SEQRES 14 A 403 PRO VAL SER ALA LEU HIS LYS ILE ASN ILE ASP SER LEU SEQRES 15 A 403 ILE GLU GLY ILE GLU GLU TYR ILE LYS THR PRO TYR ARG SEQRES 16 A 403 ASP LEU SER GLN LYS PRO VAL MET LEU VAL ILE ARG SER SEQRES 17 A 403 PHE ASP VAL ASN LYS PRO GLY THR GLN PHE ASN GLU LEU SEQRES 18 A 403 LYS GLY GLY VAL ILE GLY GLY SER ILE ILE GLN GLY LEU SEQRES 19 A 403 PHE LYS VAL ASP GLN GLU ILE LYS VAL LEU PRO GLY LEU SEQRES 20 A 403 ARG VAL GLU LYS GLN GLY LYS VAL SER TYR GLU PRO ILE SEQRES 21 A 403 PHE THR LYS ILE SER SER ILE ARG PHE GLY ASP GLU GLU SEQRES 22 A 403 PHE LYS GLU ALA LYS PRO GLY GLY LEU VAL ALA ILE GLY SEQRES 23 A 403 THR TYR LEU ASP PRO SER LEU THR LYS ALA ASP ASN LEU SEQRES 24 A 403 LEU GLY SER ILE ILE THR LEU ALA ASP ALA GLU VAL PRO SEQRES 25 A 403 VAL LEU TRP ASN ILE ARG ILE LYS TYR ASN LEU LEU GLU SEQRES 26 A 403 ARG VAL VAL GLY ALA LYS GLU MET LEU LYS VAL ASP PRO SEQRES 27 A 403 ILE ARG ALA LYS GLU THR LEU MET LEU SER VAL GLY SER SEQRES 28 A 403 SER THR THR LEU GLY ILE VAL THR SER VAL LYS LYS ASP SEQRES 29 A 403 GLU ILE GLU VAL GLU LEU ARG ARG PRO VAL ALA VAL TRP SEQRES 30 A 403 SER ASN ASN ILE ARG THR VAL ILE SER ARG GLN ILE ALA SEQRES 31 A 403 GLY ARG TRP ARG MET ILE GLY TRP GLY LEU VAL GLU ILE HET GDP A 416 28 HET 5GP A 1 24 HET MG A 417 1 HET MG A 418 1 HET MG A 419 1 HET MG A 420 1 HET MG A 421 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 5GP C10 H14 N5 O8 P FORMUL 4 MG 5(MG 2+) FORMUL 9 HOH *313(H2 O) HELIX 1 1 GLY A 21 GLY A 31 1 11 HELIX 2 2 CYS A 74 GLY A 78 5 5 HELIX 3 3 HIS A 97 VAL A 99 5 3 HELIX 4 4 LEU A 100 ALA A 109 1 10 HELIX 5 5 GLN A 126 GLY A 140 1 15 HELIX 6 6 LYS A 150 VAL A 154 5 5 HELIX 7 7 SER A 155 LYS A 171 1 17 HELIX 8 8 ASN A 190 ILE A 202 1 13 HELIX 9 9 GLN A 229 LEU A 233 5 5 HELIX 10 10 ASP A 302 LYS A 307 1 6 HELIX 11 11 ALA A 308 ASN A 310 5 3 SHEET 1 A 7 TYR A 68 VAL A 69 0 SHEET 2 A 7 GLY A 50 VAL A 58 -1 N GLY A 57 O VAL A 69 SHEET 3 A 7 LYS A 84 ASP A 93 -1 O PHE A 91 N ALA A 52 SHEET 4 A 7 ASN A 11 VAL A 15 1 N ILE A 12 O SER A 90 SHEET 5 A 7 GLY A 113 ALA A 119 1 O GLY A 113 N GLY A 13 SHEET 6 A 7 LEU A 144 ASN A 149 1 O VAL A 147 N LEU A 116 SHEET 7 A 7 ILE A 180 PRO A 182 1 O ILE A 181 N ILE A 146 SHEET 1 B 8 SER A 268 LYS A 275 0 SHEET 2 B 8 GLU A 252 VAL A 261 -1 N LEU A 259 O GLU A 270 SHEET 3 B 8 ILE A 315 LEU A 318 -1 O ILE A 315 N LEU A 256 SHEET 4 B 8 VAL A 214 PHE A 221 -1 N MET A 215 O ILE A 316 SHEET 5 B 8 VAL A 237 GLN A 244 -1 O GLY A 239 N ARG A 219 SHEET 6 B 8 VAL A 295 GLY A 298 -1 O ILE A 297 N ILE A 238 SHEET 7 B 8 SER A 278 PHE A 281 -1 N SER A 278 O GLY A 298 SHEET 8 B 8 GLU A 284 PHE A 286 -1 O PHE A 286 N ILE A 279 SHEET 1 C 2 PHE A 247 LYS A 248 0 SHEET 2 C 2 GLU A 288 ALA A 289 -1 O ALA A 289 N PHE A 247 SHEET 1 D 7 VAL A 325 LEU A 335 0 SHEET 2 D 7 GLU A 377 ALA A 387 -1 O ILE A 378 N ILE A 331 SHEET 3 D 7 SER A 364 VAL A 373 -1 N ILE A 369 O GLU A 381 SHEET 4 D 7 THR A 356 VAL A 361 -1 N LEU A 359 O THR A 366 SHEET 5 D 7 ILE A 393 ILE A 401 -1 O SER A 398 N MET A 358 SHEET 6 D 7 ARG A 404 GLU A 414 -1 O ILE A 408 N ILE A 397 SHEET 7 D 7 VAL A 325 LEU A 335 -1 N ARG A 330 O GLU A 414 SSBOND 1 CYS A 59 CYS A 74 1555 1555 2.05 SSBOND 2 CYS A 62 CYS A 77 1555 1555 2.03 LINK OG1 THR A 23 MG MG A 419 1555 1555 2.58 LINK OG1 THR A 54 MG MG A 417 1555 1555 2.52 LINK O GLU A 66 MG MG A 420 1555 1555 2.43 LINK O TYR A 68 MG MG A 420 1555 1555 2.34 LINK O THR A 70 MG MG A 417 1555 1555 2.56 LINK O MET A 111 MG MG A 421 1555 1555 2.45 LINK O VAL A 151 MG MG A 418 1555 1555 2.46 LINK O VAL A 154 MG MG A 418 1555 1555 2.42 LINK OD2 ASP A 192 MG MG A 420 1555 1555 2.39 LINK O1B GDP A 416 MG MG A 419 1555 1555 2.51 LINK MG MG A 417 O HOH A 591 1555 1555 2.65 LINK MG MG A 417 O HOH A 594 1555 1555 2.51 LINK MG MG A 417 O HOH A 603 1555 1555 2.62 LINK MG MG A 417 O HOH A 611 1555 1555 2.64 LINK MG MG A 418 O HOH A 596 1555 1555 2.36 LINK MG MG A 419 O HOH A 574 1555 1555 2.72 LINK MG MG A 419 O HOH A 589 1555 1555 2.64 LINK MG MG A 420 O HOH A 581 1555 1555 2.56 LINK MG MG A 420 O HOH A 617 1555 1555 2.70 LINK MG MG A 421 O HOH A 588 1555 1555 2.75 LINK MG MG A 421 O HOH A 601 1555 1555 2.73 LINK MG MG A 421 O HOH A 610 1555 1555 2.58 LINK MG MG A 421 O HOH A 615 1555 1555 2.59 LINK MG MG A 421 O HOH A 616 1555 1555 2.43 CISPEP 1 LYS A 48 LEU A 49 0 0.53 CISPEP 2 LYS A 64 PRO A 65 0 7.26 CISPEP 3 PHE A 124 PRO A 125 0 0.86 CISPEP 4 LEU A 256 PRO A 257 0 -2.13 CISPEP 5 LYS A 263 GLN A 264 0 -3.29 SITE 1 AC1 22 ASP A 19 HIS A 20 GLY A 21 LYS A 22 SITE 2 AC1 22 THR A 23 THR A 24 HOH A 41 ASN A 149 SITE 3 AC1 22 LYS A 150 ASP A 152 SER A 184 ALA A 185 SITE 4 AC1 22 LEU A 186 MG A 419 HOH A 530 HOH A 574 SITE 5 AC1 22 HOH A 580 HOH A 622 HOH A 626 HOH A 638 SITE 6 AC1 22 HOH A 652 HOH A 660 SITE 1 AC2 10 PHE A 221 VAL A 223 LYS A 234 SER A 278 SITE 2 AC2 10 ARG A 280 GLY A 282 ALA A 296 GLY A 298 SITE 3 AC2 10 HOH A 661 HOH A 668 SITE 1 AC3 6 THR A 54 THR A 70 HOH A 591 HOH A 594 SITE 2 AC3 6 HOH A 603 HOH A 611 SITE 1 AC4 6 VAL A 151 VAL A 154 TRP A 327 ASN A 328 SITE 2 AC4 6 HOH A 582 HOH A 596 SITE 1 AC5 5 THR A 23 LYS A 48 GDP A 416 HOH A 574 SITE 2 AC5 5 HOH A 589 SITE 1 AC6 5 GLU A 66 TYR A 68 ASP A 192 HOH A 581 SITE 2 AC6 5 HOH A 617 SITE 1 AC7 6 MET A 111 HOH A 588 HOH A 601 HOH A 610 SITE 2 AC7 6 HOH A 615 HOH A 616 CRYST1 187.120 187.120 187.120 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005344 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005344 0.00000