HEADER HYDROLASE 27-OCT-10 3PEU TITLE S. CEREVISIAE DBP5 L327V C-TERMINAL DOMAIN BOUND TO GLE1 H337R AND IP6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE DBP5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DBP5-CTD; COMPND 5 SYNONYM: DEAD BOX PROTEIN 5, HELICASE CA5/6, RIBONUCLEIC ACID- COMPND 6 TRAFFICKING PROTEIN 8; COMPND 7 EC: 3.6.4.13; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: NUCLEOPORIN GLE1; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: NUCLEAR PORE PROTEIN GLE1, RNA EXPORT FACTOR GLE1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: DBP5, RAT8, YOR046C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 GENE: BRR3, D1049, GLE1, RSS1, YDL207W; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RECA, HEAT, DEAD-BOX, ATPASE, HELICASE, MRNA EXPORT, NUCLEAR PORE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.MONTPETIT,N.D.THOMSEN,K.J.HELMKE,M.A.SEELIGER,J.M.BERGER,K.WEIS REVDAT 5 14-OCT-20 3PEU 1 REMARK SEQADV HETSYN LINK REVDAT 4 08-NOV-17 3PEU 1 REMARK REVDAT 3 10-AUG-11 3PEU 1 REMARK VERSN REVDAT 2 27-APR-11 3PEU 1 JRNL REVDAT 1 23-MAR-11 3PEU 0 JRNL AUTH B.MONTPETIT,N.D.THOMSEN,K.J.HELMKE,M.A.SEELIGER,J.M.BERGER, JRNL AUTH 2 K.WEIS JRNL TITL A CONSERVED MECHANISM OF DEAD-BOX ATPASE ACTIVATION BY JRNL TITL 2 NUCLEOPORINS AND INSP(6) IN MRNA EXPORT. JRNL REF NATURE V. 472 238 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21441902 JRNL DOI 10.1038/NATURE09862 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 39606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4011 - 6.2611 0.99 2862 152 0.1636 0.1570 REMARK 3 2 6.2611 - 4.9713 0.99 2851 143 0.1825 0.2086 REMARK 3 3 4.9713 - 4.3433 1.00 2858 151 0.1408 0.1523 REMARK 3 4 4.3433 - 3.9464 0.99 2829 148 0.1536 0.1991 REMARK 3 5 3.9464 - 3.6637 0.99 2865 146 0.1593 0.1861 REMARK 3 6 3.6637 - 3.4477 0.98 2816 144 0.1796 0.2267 REMARK 3 7 3.4477 - 3.2751 0.97 2801 143 0.2032 0.2123 REMARK 3 8 3.2751 - 3.1325 0.95 2731 150 0.2084 0.2597 REMARK 3 9 3.1325 - 3.0120 0.94 2697 135 0.2399 0.2490 REMARK 3 10 3.0120 - 2.9081 0.89 2548 131 0.2428 0.3092 REMARK 3 11 2.9081 - 2.8171 0.88 2531 136 0.2601 0.3007 REMARK 3 12 2.8171 - 2.7366 0.86 2449 139 0.2648 0.3631 REMARK 3 13 2.7366 - 2.6646 0.84 2390 135 0.2793 0.2989 REMARK 3 14 2.6646 - 2.5996 0.83 2404 121 0.2917 0.3305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 40.93 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.81690 REMARK 3 B22 (A**2) : -14.81690 REMARK 3 B33 (A**2) : 29.63370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3937 REMARK 3 ANGLE : 0.677 5329 REMARK 3 CHIRALITY : 0.047 602 REMARK 3 PLANARITY : 0.002 666 REMARK 3 DIHEDRAL : 21.968 1509 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 303:389 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9464 61.7387 105.2015 REMARK 3 T TENSOR REMARK 3 T11: 0.4106 T22: 0.5471 REMARK 3 T33: 0.6189 T12: -0.0149 REMARK 3 T13: -0.0437 T23: -0.0991 REMARK 3 L TENSOR REMARK 3 L11: 2.6353 L22: 2.7534 REMARK 3 L33: 2.9037 L12: -0.1840 REMARK 3 L13: -1.9525 L23: -1.3744 REMARK 3 S TENSOR REMARK 3 S11: 0.0519 S12: 0.0746 S13: 0.1674 REMARK 3 S21: -0.0341 S22: 0.0285 S23: 0.1946 REMARK 3 S31: 0.1092 S32: -0.3855 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 390:482 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7276 53.6898 115.5027 REMARK 3 T TENSOR REMARK 3 T11: 0.6186 T22: 0.6660 REMARK 3 T33: 0.7138 T12: -0.0049 REMARK 3 T13: -0.0275 T23: -0.1247 REMARK 3 L TENSOR REMARK 3 L11: 2.2172 L22: 2.0309 REMARK 3 L33: 1.8307 L12: 1.0037 REMARK 3 L13: -0.8438 L23: -1.6365 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: -0.0962 S13: -0.3149 REMARK 3 S21: 0.0614 S22: -0.0851 S23: -0.6792 REMARK 3 S31: 0.3088 S32: 0.3773 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESSEQ 244:379 REMARK 3 ORIGIN FOR THE GROUP (A): 42.9515 71.2632 100.3666 REMARK 3 T TENSOR REMARK 3 T11: 0.3955 T22: 0.4342 REMARK 3 T33: 0.6137 T12: -0.0263 REMARK 3 T13: -0.0234 T23: -0.0631 REMARK 3 L TENSOR REMARK 3 L11: 2.5198 L22: 2.6243 REMARK 3 L33: 2.6306 L12: -0.6014 REMARK 3 L13: -0.1029 L23: 1.0071 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: -0.1218 S13: 0.7872 REMARK 3 S21: 0.0643 S22: 0.1336 S23: -0.1350 REMARK 3 S31: -0.1126 S32: 0.0350 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESSEQ 380:538 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4418 54.8198 87.4052 REMARK 3 T TENSOR REMARK 3 T11: 0.4368 T22: 0.4962 REMARK 3 T33: 0.3592 T12: 0.0247 REMARK 3 T13: -0.0091 T23: -0.0498 REMARK 3 L TENSOR REMARK 3 L11: 4.1014 L22: 2.8687 REMARK 3 L33: 2.0157 L12: -0.0499 REMARK 3 L13: 0.5620 L23: 0.2570 REMARK 3 S TENSOR REMARK 3 S11: 0.0331 S12: 0.2787 S13: 0.0406 REMARK 3 S21: -0.2084 S22: 0.0876 S23: 0.0373 REMARK 3 S31: 0.0658 S32: -0.0859 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESSEQ 3001 REMARK 3 ORIGIN FOR THE GROUP (A): 47.2029 62.7045 110.0244 REMARK 3 T TENSOR REMARK 3 T11: 0.5499 T22: 0.7611 REMARK 3 T33: 0.7120 T12: -0.0208 REMARK 3 T13: -0.0549 T23: -0.1554 REMARK 3 L TENSOR REMARK 3 L11: 0.0069 L22: 0.0045 REMARK 3 L33: 0.0250 L12: -0.0054 REMARK 3 L13: 0.0007 L23: -0.0028 REMARK 3 S TENSOR REMARK 3 S11: 0.4020 S12: -1.1000 S13: -0.6607 REMARK 3 S21: 1.1081 S22: 0.1086 S23: 0.0707 REMARK 3 S31: 0.7526 S32: -0.3672 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PEU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796, 0.9798, 1.020 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42284 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.13, RESOLVE 2.14 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 100 MM HEPES PH 8.0, 50 REMARK 280 MM NAOAC, 200MM LIS04, 10 MM HEPES PH 7.5, 100MM NACL, 1MM DTT, REMARK 280 0.5 MM IP6, 5% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.15100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.30200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.72650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 167.87750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.57550 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.15100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 134.30200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 167.87750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 100.72650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.57550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 55.17800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 95.57110 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 201.45300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 295 REMARK 465 ALA A 296 REMARK 465 ASN A 297 REMARK 465 GLU A 298 REMARK 465 VAL A 299 REMARK 465 ASN A 300 REMARK 465 VAL A 301 REMARK 465 ASP A 302 REMARK 465 ARG A 429 REMARK 465 PHE A 430 REMARK 465 GLY B 242 REMARK 465 ALA B 243 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 399 92.57 -68.41 REMARK 500 LYS A 433 -3.19 74.35 REMARK 500 THR B 297 -167.93 -126.34 REMARK 500 CYS B 379 79.61 -155.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1005 DBREF 3PEU A 297 482 UNP P20449 DBP5_YEAST 297 482 DBREF 3PEU B 244 538 UNP Q12315 GLE1_YEAST 244 538 SEQADV 3PEU GLY A 295 UNP P20449 EXPRESSION TAG SEQADV 3PEU ALA A 296 UNP P20449 EXPRESSION TAG SEQADV 3PEU VAL A 327 UNP P20449 LEU 327 EXPRESSION TAG SEQADV 3PEU GLY B 242 UNP Q12315 EXPRESSION TAG SEQADV 3PEU ALA B 243 UNP Q12315 EXPRESSION TAG SEQADV 3PEU ARG B 337 UNP Q12315 HIS 337 ENGINEERED MUTATION SEQRES 1 A 188 GLY ALA ASN GLU VAL ASN VAL ASP ALA ILE LYS GLN LEU SEQRES 2 A 188 TYR MSE ASP CYS LYS ASN GLU ALA ASP LYS PHE ASP VAL SEQRES 3 A 188 LEU THR GLU LEU TYR GLY VAL MSE THR ILE GLY SER SER SEQRES 4 A 188 ILE ILE PHE VAL ALA THR LYS LYS THR ALA ASN VAL LEU SEQRES 5 A 188 TYR GLY LYS LEU LYS SER GLU GLY HIS GLU VAL SER ILE SEQRES 6 A 188 LEU HIS GLY ASP LEU GLN THR GLN GLU ARG ASP ARG LEU SEQRES 7 A 188 ILE ASP ASP PHE ARG GLU GLY ARG SER LYS VAL LEU ILE SEQRES 8 A 188 THR THR ASN VAL LEU ALA ARG GLY ILE ASP ILE PRO THR SEQRES 9 A 188 VAL SER MSE VAL VAL ASN TYR ASP LEU PRO THR LEU ALA SEQRES 10 A 188 ASN GLY GLN ALA ASP PRO ALA THR TYR ILE HIS ARG ILE SEQRES 11 A 188 GLY ARG THR GLY ARG PHE GLY ARG LYS GLY VAL ALA ILE SEQRES 12 A 188 SER PHE VAL HIS ASP LYS ASN SER PHE ASN ILE LEU SER SEQRES 13 A 188 ALA ILE GLN LYS TYR PHE GLY ASP ILE GLU MSE THR ARG SEQRES 14 A 188 VAL PRO THR ASP ASP TRP ASP GLU VAL GLU LYS ILE VAL SEQRES 15 A 188 LYS LYS VAL LEU LYS ASP SEQRES 1 B 297 GLY ALA THR ASN PHE ASP LYS ILE SER LYS MSE PHE TRP SEQRES 2 B 297 HIS TYR LYS ASP LYS ILE ALA GLN ILE LYS GLN ASP ILE SEQRES 3 B 297 VAL LEU PRO ILE LYS LYS ALA ASP VAL ASN VAL ARG ASN SEQRES 4 B 297 LEU LEU SER ARG HIS LYS ARG LYS ILE ASN PRO LYS PHE SEQRES 5 B 297 GLY GLN LEU THR ASN SER ASN GLN GLN LEU PHE LYS ILE SEQRES 6 B 297 GLN ASN GLU LEU THR GLN LEU ILE ASN ASP THR LYS GLY SEQRES 7 B 297 ASP SER LEU ALA TYR HIS TRP ILE LEU ASN PHE ILE ALA SEQRES 8 B 297 LYS ALA VAL VAL ARG GLN ALA GLU THR GLU VAL ARG VAL SEQRES 9 B 297 LYS PRO GLU SER ALA LEU PRO LEU GLY LYS LEU THR LEU SEQRES 10 B 297 TYR LEU LEU VAL GLN PHE PRO GLU LEU GLN GLU LEU PHE SEQRES 11 B 297 MSE ALA ARG LEU VAL LYS LYS CYS PRO PHE VAL ILE GLY SEQRES 12 B 297 PHE THR CYS GLU ILE ASP THR GLU LYS GLY ARG GLN ASN SEQRES 13 B 297 MSE GLY TRP LYS ARG ASN ASN GLU ASN LYS TRP GLU ASP SEQRES 14 B 297 ASN THR SER TYR ASP GLU ARG MSE GLY GLY ILE LEU SER SEQRES 15 B 297 LEU PHE ALA ILE ILE THR ARG LEU GLN LEU PRO GLN GLU SEQRES 16 B 297 PHE ILE THR THR THR SER HIS PRO PHE PRO ILE ALA LEU SEQRES 17 B 297 SER TRP HIS ILE LEU ALA ARG ILE CYS ASN THR PRO LEU SEQRES 18 B 297 ASN LEU ILE THR ASN THR HIS PHE VAL ILE LEU GLY SER SEQRES 19 B 297 TRP TRP ASP ALA ALA ALA VAL GLN PHE LEU GLN ALA TYR SEQRES 20 B 297 GLY ASN GLN ALA SER LYS LEU LEU ILE LEU ILE GLY GLU SEQRES 21 B 297 GLU LEU THR SER ARG MSE ALA GLU LYS LYS TYR VAL GLY SEQRES 22 B 297 ALA ALA ARG LEU ARG ILE LEU LEU GLU ALA TRP GLN ASN SEQRES 23 B 297 ASN ASN MSE GLU SER PHE PRO GLU MSE SER PRO MODRES 3PEU MSE A 309 MET SELENOMETHIONINE MODRES 3PEU MSE A 328 MET SELENOMETHIONINE MODRES 3PEU MSE A 401 MET SELENOMETHIONINE MODRES 3PEU MSE A 461 MET SELENOMETHIONINE MODRES 3PEU MSE B 252 MET SELENOMETHIONINE MODRES 3PEU MSE B 372 MET SELENOMETHIONINE MODRES 3PEU MSE B 398 MET SELENOMETHIONINE MODRES 3PEU MSE B 418 MET SELENOMETHIONINE MODRES 3PEU MSE B 507 MET SELENOMETHIONINE MODRES 3PEU MSE B 530 MET SELENOMETHIONINE MODRES 3PEU MSE B 536 MET SELENOMETHIONINE HET MSE A 309 8 HET MSE A 328 8 HET MSE A 401 8 HET MSE A 461 8 HET MSE B 252 8 HET MSE B 372 8 HET MSE B 398 8 HET MSE B 418 8 HET MSE B 507 8 HET MSE B 530 8 HET MSE B 536 8 HET SO4 A1001 5 HET GOL A1002 6 HET IHP B1003 36 HET GOL B1004 6 HET GOL B1005 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL 3(C3 H8 O3) FORMUL 5 IHP C6 H18 O24 P6 FORMUL 8 HOH *57(H2 O) HELIX 1 1 ASP A 316 TYR A 325 1 10 HELIX 2 2 THR A 339 SER A 352 1 14 HELIX 3 3 GLN A 365 GLU A 378 1 14 HELIX 4 4 ASP A 416 ILE A 424 1 9 HELIX 5 5 GLY A 425 GLY A 428 5 4 HELIX 6 6 ASP A 442 PHE A 456 1 15 HELIX 7 7 ASP A 468 ASP A 482 1 15 HELIX 8 8 THR B 244 ILE B 267 1 24 HELIX 9 9 ILE B 267 ALA B 274 1 8 HELIX 10 10 ASP B 275 ASN B 290 1 16 HELIX 11 11 PRO B 291 LEU B 296 1 6 HELIX 12 12 SER B 299 ASP B 316 1 18 HELIX 13 13 ASP B 320 LYS B 346 1 27 HELIX 14 14 SER B 349 PHE B 364 1 16 HELIX 15 15 PRO B 365 CYS B 379 1 15 HELIX 16 16 PRO B 380 GLY B 384 5 5 HELIX 17 17 THR B 391 MSE B 398 1 8 HELIX 18 18 ASP B 410 LEU B 431 1 22 HELIX 19 19 ILE B 447 ASN B 459 1 13 HELIX 20 20 PRO B 461 ILE B 465 5 5 HELIX 21 21 THR B 466 GLY B 489 1 24 HELIX 22 22 GLY B 489 GLU B 501 1 13 HELIX 23 23 GLU B 501 MSE B 507 1 7 HELIX 24 24 ALA B 508 LYS B 511 5 4 HELIX 25 25 TYR B 512 ASN B 527 1 16 SHEET 1 A 7 VAL A 357 LEU A 360 0 SHEET 2 A 7 VAL A 383 THR A 386 1 O ILE A 385 N LEU A 360 SHEET 3 A 7 SER A 332 PHE A 336 1 N ILE A 335 O LEU A 384 SHEET 4 A 7 VAL A 399 ASN A 404 1 O VAL A 403 N ILE A 334 SHEET 5 A 7 VAL A 435 VAL A 440 1 O ILE A 437 N ASN A 404 SHEET 6 A 7 LYS A 305 ASP A 310 1 N LYS A 305 O ALA A 436 SHEET 7 A 7 THR A 462 PRO A 465 1 O VAL A 464 N TYR A 308 LINK C TYR A 308 N MSE A 309 1555 1555 1.33 LINK C MSE A 309 N ASP A 310 1555 1555 1.33 LINK C VAL A 327 N MSE A 328 1555 1555 1.33 LINK C MSE A 328 N THR A 329 1555 1555 1.33 LINK C SER A 400 N MSE A 401 1555 1555 1.33 LINK C MSE A 401 N VAL A 402 1555 1555 1.33 LINK C GLU A 460 N MSE A 461 1555 1555 1.33 LINK C MSE A 461 N THR A 462 1555 1555 1.33 LINK C LYS B 251 N MSE B 252 1555 1555 1.33 LINK C MSE B 252 N PHE B 253 1555 1555 1.33 LINK C PHE B 371 N MSE B 372 1555 1555 1.33 LINK C MSE B 372 N ALA B 373 1555 1555 1.33 LINK C ASN B 397 N MSE B 398 1555 1555 1.33 LINK C MSE B 398 N GLY B 399 1555 1555 1.33 LINK C ARG B 417 N MSE B 418 1555 1555 1.33 LINK C MSE B 418 N GLY B 419 1555 1555 1.33 LINK C ARG B 506 N MSE B 507 1555 1555 1.33 LINK C MSE B 507 N ALA B 508 1555 1555 1.33 LINK C ASN B 529 N MSE B 530 1555 1555 1.33 LINK C MSE B 530 N GLU B 531 1555 1555 1.33 LINK C GLU B 535 N MSE B 536 1555 1555 1.33 LINK C MSE B 536 N SER B 537 1555 1555 1.33 SITE 1 AC1 2 LYS A 340 LYS B 510 SITE 1 AC2 8 VAL A 389 ASP A 406 LEU A 407 PRO A 408 SITE 2 AC2 8 THR A 409 ARG A 423 HOH A1008 ASN B 463 SITE 1 AC3 13 LYS A 477 LYS A 481 LYS B 264 LYS B 333 SITE 2 AC3 13 ARG B 337 ARG B 374 LYS B 377 LYS B 378 SITE 3 AC3 13 HOH B1025 HOH B1043 HOH B1044 HOH B1051 SITE 4 AC3 13 HOH B1052 SITE 1 AC4 5 ILE B 389 ASN B 411 ASP B 415 ASN B 467 SITE 2 AC4 5 HOH B1031 SITE 1 AC5 8 PHE B 246 ILE B 249 GLY B 384 THR B 386 SITE 2 AC5 8 ARG B 456 THR B 460 PRO B 461 LEU B 464 CRYST1 110.356 110.356 201.453 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009062 0.005232 0.000000 0.00000 SCALE2 0.000000 0.010463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004964 0.00000