HEADER HYDROLASE 27-OCT-10 3PEV TITLE S. CEREVISIAE DBP5 L327V C-TERMINAL DOMAIN BOUND TO GLE1 AND IP6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE DBP5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DBP5-CTD; COMPND 5 SYNONYM: DEAD BOX PROTEIN 5, HELICASE CA5/6, RIBONUCLEIC ACID- COMPND 6 TRAFFICKING PROTEIN 8; COMPND 7 EC: 3.6.4.13; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: NUCLEOPORIN GLE1; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: NUCLEAR PORE PROTEIN GLE1, RNA EXPORT FACTOR GLE1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: DBP5, RAT8, YOR046C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 GENE: BRR3, D1049, GLE1, RSS1, YDL207W; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RECA, HEAT, DEAD-BOX, ATPASE, HELICASE, MRNA EXPORT, NUCLEAR PORE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.MONTPETIT,N.D.THOMSEN,K.J.HELMKE,M.A.SEELIGER,J.M.BERGER,K.WEIS REVDAT 4 14-OCT-20 3PEV 1 REMARK SEQADV HETSYN LINK REVDAT 3 08-NOV-17 3PEV 1 REMARK REVDAT 2 27-APR-11 3PEV 1 JRNL REVDAT 1 23-MAR-11 3PEV 0 JRNL AUTH B.MONTPETIT,N.D.THOMSEN,K.J.HELMKE,M.A.SEELIGER,J.M.BERGER, JRNL AUTH 2 K.WEIS JRNL TITL A CONSERVED MECHANISM OF DEAD-BOX ATPASE ACTIVATION BY JRNL TITL 2 NUCLEOPORINS AND INSP(6) IN MRNA EXPORT. JRNL REF NATURE V. 472 238 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21441902 JRNL DOI 10.1038/NATURE09862 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 25940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0157 - 5.1962 1.00 2989 157 0.1890 0.1841 REMARK 3 2 5.1962 - 4.1251 1.00 2804 149 0.1567 0.1874 REMARK 3 3 4.1251 - 3.6039 1.00 2765 144 0.1800 0.2304 REMARK 3 4 3.6039 - 3.2744 1.00 2737 144 0.2119 0.2760 REMARK 3 5 3.2744 - 3.0398 1.00 2730 143 0.2284 0.2766 REMARK 3 6 3.0398 - 2.8606 1.00 2709 142 0.2336 0.3085 REMARK 3 7 2.8606 - 2.7173 1.00 2696 141 0.2502 0.2918 REMARK 3 8 2.7173 - 2.5991 1.00 2674 142 0.2774 0.3511 REMARK 3 9 2.5991 - 2.4990 0.94 2543 131 0.3176 0.3464 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 46.86 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -19.48890 REMARK 3 B22 (A**2) : -19.48890 REMARK 3 B33 (A**2) : 38.97780 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3937 REMARK 3 ANGLE : 0.708 5330 REMARK 3 CHIRALITY : 0.053 602 REMARK 3 PLANARITY : 0.002 666 REMARK 3 DIHEDRAL : 20.501 1506 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 303:389 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8702 61.9268 105.3973 REMARK 3 T TENSOR REMARK 3 T11: 0.4612 T22: 0.5571 REMARK 3 T33: 0.6749 T12: 0.0060 REMARK 3 T13: -0.0575 T23: -0.0841 REMARK 3 L TENSOR REMARK 3 L11: 2.5316 L22: 2.3090 REMARK 3 L33: 2.7340 L12: 0.1418 REMARK 3 L13: -2.3828 L23: -0.9541 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: 0.0491 S13: 0.1177 REMARK 3 S21: -0.1135 S22: 0.0632 S23: 0.2090 REMARK 3 S31: 0.1159 S32: -0.3174 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 390:482 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6082 53.8873 115.7017 REMARK 3 T TENSOR REMARK 3 T11: 0.6508 T22: 0.6863 REMARK 3 T33: 0.7926 T12: -0.0284 REMARK 3 T13: -0.0367 T23: -0.1223 REMARK 3 L TENSOR REMARK 3 L11: 2.4891 L22: 2.2688 REMARK 3 L33: 1.7922 L12: 0.5372 REMARK 3 L13: -0.3720 L23: -1.4161 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: 0.0199 S13: -0.3171 REMARK 3 S21: 0.0930 S22: -0.0859 S23: -0.6656 REMARK 3 S31: 0.3338 S32: 0.3837 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESSEQ 244:379 REMARK 3 ORIGIN FOR THE GROUP (A): 42.9509 71.5307 100.6647 REMARK 3 T TENSOR REMARK 3 T11: 0.4308 T22: 0.4765 REMARK 3 T33: 0.6183 T12: -0.0164 REMARK 3 T13: -0.0158 T23: -0.0743 REMARK 3 L TENSOR REMARK 3 L11: 2.7252 L22: 2.9193 REMARK 3 L33: 2.5310 L12: -0.7727 REMARK 3 L13: -0.1112 L23: 1.1927 REMARK 3 S TENSOR REMARK 3 S11: 0.0300 S12: -0.0470 S13: 0.8444 REMARK 3 S21: 0.0440 S22: 0.1132 S23: -0.1658 REMARK 3 S31: -0.0735 S32: 0.0762 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESSEQ 380:538 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4976 55.0776 87.6943 REMARK 3 T TENSOR REMARK 3 T11: 0.4713 T22: 0.5330 REMARK 3 T33: 0.4041 T12: 0.0222 REMARK 3 T13: -0.0116 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 4.4988 L22: 3.2346 REMARK 3 L33: 2.0276 L12: -0.3344 REMARK 3 L13: 0.5527 L23: 0.3792 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: 0.2416 S13: 0.0720 REMARK 3 S21: -0.2660 S22: 0.0672 S23: 0.0456 REMARK 3 S31: 0.0317 S32: -0.0843 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 47.0289 62.9383 110.2915 REMARK 3 T TENSOR REMARK 3 T11: 0.5433 T22: 0.7389 REMARK 3 T33: 0.5760 T12: -0.0190 REMARK 3 T13: 0.0006 T23: -0.1987 REMARK 3 L TENSOR REMARK 3 L11: 0.2182 L22: 1.7502 REMARK 3 L33: 0.3233 L12: 0.1184 REMARK 3 L13: 0.1364 L23: -0.5593 REMARK 3 S TENSOR REMARK 3 S11: 0.2399 S12: -1.0098 S13: -0.5844 REMARK 3 S21: 0.7470 S22: 0.1689 S23: 0.1597 REMARK 3 S31: 1.4607 S32: -0.2094 S33: 0.0056 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PEV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.116 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26030 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 100 MM HEPES PH 7.8, REMARK 280 200MM LIS04, 10MM HEPES PH 7.5, 150MM NACL, 1MM DTT, 0.5 MM IP6, REMARK 280 5% GLYCEROL , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.30467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.60933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.95700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 168.26167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.65233 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.30467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 134.60933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 168.26167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 100.95700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.65233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 55.43350 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 96.01364 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 201.91400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 295 REMARK 465 ALA A 296 REMARK 465 ASN A 297 REMARK 465 GLU A 298 REMARK 465 VAL A 299 REMARK 465 ASN A 300 REMARK 465 VAL A 301 REMARK 465 ASP A 302 REMARK 465 ARG A 429 REMARK 465 PHE A 430 REMARK 465 GLY B 242 REMARK 465 ALA B 243 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 399 89.80 -66.67 REMARK 500 LYS A 433 -0.78 69.67 REMARK 500 PHE A 456 55.51 -97.55 REMARK 500 THR B 297 -163.70 -128.83 REMARK 500 CYS B 379 76.08 -154.33 REMARK 500 ASN B 406 38.33 74.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1005 DBREF 3PEV A 297 482 UNP P20449 DBP5_YEAST 297 482 DBREF 3PEV B 244 538 UNP Q12315 GLE1_YEAST 244 538 SEQADV 3PEV GLY A 295 UNP P20449 EXPRESSION TAG SEQADV 3PEV ALA A 296 UNP P20449 EXPRESSION TAG SEQADV 3PEV VAL A 327 UNP P20449 LEU 327 ENGINEERED MUTATION SEQADV 3PEV GLY B 242 UNP Q12315 EXPRESSION TAG SEQADV 3PEV ALA B 243 UNP Q12315 EXPRESSION TAG SEQRES 1 A 188 GLY ALA ASN GLU VAL ASN VAL ASP ALA ILE LYS GLN LEU SEQRES 2 A 188 TYR MSE ASP CYS LYS ASN GLU ALA ASP LYS PHE ASP VAL SEQRES 3 A 188 LEU THR GLU LEU TYR GLY VAL MSE THR ILE GLY SER SER SEQRES 4 A 188 ILE ILE PHE VAL ALA THR LYS LYS THR ALA ASN VAL LEU SEQRES 5 A 188 TYR GLY LYS LEU LYS SER GLU GLY HIS GLU VAL SER ILE SEQRES 6 A 188 LEU HIS GLY ASP LEU GLN THR GLN GLU ARG ASP ARG LEU SEQRES 7 A 188 ILE ASP ASP PHE ARG GLU GLY ARG SER LYS VAL LEU ILE SEQRES 8 A 188 THR THR ASN VAL LEU ALA ARG GLY ILE ASP ILE PRO THR SEQRES 9 A 188 VAL SER MSE VAL VAL ASN TYR ASP LEU PRO THR LEU ALA SEQRES 10 A 188 ASN GLY GLN ALA ASP PRO ALA THR TYR ILE HIS ARG ILE SEQRES 11 A 188 GLY ARG THR GLY ARG PHE GLY ARG LYS GLY VAL ALA ILE SEQRES 12 A 188 SER PHE VAL HIS ASP LYS ASN SER PHE ASN ILE LEU SER SEQRES 13 A 188 ALA ILE GLN LYS TYR PHE GLY ASP ILE GLU MSE THR ARG SEQRES 14 A 188 VAL PRO THR ASP ASP TRP ASP GLU VAL GLU LYS ILE VAL SEQRES 15 A 188 LYS LYS VAL LEU LYS ASP SEQRES 1 B 297 GLY ALA THR ASN PHE ASP LYS ILE SER LYS MSE PHE TRP SEQRES 2 B 297 HIS TYR LYS ASP LYS ILE ALA GLN ILE LYS GLN ASP ILE SEQRES 3 B 297 VAL LEU PRO ILE LYS LYS ALA ASP VAL ASN VAL ARG ASN SEQRES 4 B 297 LEU LEU SER ARG HIS LYS ARG LYS ILE ASN PRO LYS PHE SEQRES 5 B 297 GLY GLN LEU THR ASN SER ASN GLN GLN LEU PHE LYS ILE SEQRES 6 B 297 GLN ASN GLU LEU THR GLN LEU ILE ASN ASP THR LYS GLY SEQRES 7 B 297 ASP SER LEU ALA TYR HIS TRP ILE LEU ASN PHE ILE ALA SEQRES 8 B 297 LYS ALA VAL VAL HIS GLN ALA GLU THR GLU VAL ARG VAL SEQRES 9 B 297 LYS PRO GLU SER ALA LEU PRO LEU GLY LYS LEU THR LEU SEQRES 10 B 297 TYR LEU LEU VAL GLN PHE PRO GLU LEU GLN GLU LEU PHE SEQRES 11 B 297 MSE ALA ARG LEU VAL LYS LYS CYS PRO PHE VAL ILE GLY SEQRES 12 B 297 PHE THR CYS GLU ILE ASP THR GLU LYS GLY ARG GLN ASN SEQRES 13 B 297 MSE GLY TRP LYS ARG ASN ASN GLU ASN LYS TRP GLU ASP SEQRES 14 B 297 ASN THR SER TYR ASP GLU ARG MSE GLY GLY ILE LEU SER SEQRES 15 B 297 LEU PHE ALA ILE ILE THR ARG LEU GLN LEU PRO GLN GLU SEQRES 16 B 297 PHE ILE THR THR THR SER HIS PRO PHE PRO ILE ALA LEU SEQRES 17 B 297 SER TRP HIS ILE LEU ALA ARG ILE CYS ASN THR PRO LEU SEQRES 18 B 297 ASN LEU ILE THR ASN THR HIS PHE VAL ILE LEU GLY SER SEQRES 19 B 297 TRP TRP ASP ALA ALA ALA VAL GLN PHE LEU GLN ALA TYR SEQRES 20 B 297 GLY ASN GLN ALA SER LYS LEU LEU ILE LEU ILE GLY GLU SEQRES 21 B 297 GLU LEU THR SER ARG MSE ALA GLU LYS LYS TYR VAL GLY SEQRES 22 B 297 ALA ALA ARG LEU ARG ILE LEU LEU GLU ALA TRP GLN ASN SEQRES 23 B 297 ASN ASN MSE GLU SER PHE PRO GLU MSE SER PRO MODRES 3PEV MSE A 309 MET SELENOMETHIONINE MODRES 3PEV MSE A 328 MET SELENOMETHIONINE MODRES 3PEV MSE A 401 MET SELENOMETHIONINE MODRES 3PEV MSE A 461 MET SELENOMETHIONINE MODRES 3PEV MSE B 252 MET SELENOMETHIONINE MODRES 3PEV MSE B 372 MET SELENOMETHIONINE MODRES 3PEV MSE B 398 MET SELENOMETHIONINE MODRES 3PEV MSE B 418 MET SELENOMETHIONINE MODRES 3PEV MSE B 507 MET SELENOMETHIONINE MODRES 3PEV MSE B 530 MET SELENOMETHIONINE MODRES 3PEV MSE B 536 MET SELENOMETHIONINE HET MSE A 309 8 HET MSE A 328 8 HET MSE A 401 8 HET MSE A 461 8 HET MSE B 252 8 HET MSE B 372 8 HET MSE B 398 8 HET MSE B 418 8 HET MSE B 507 8 HET MSE B 530 8 HET MSE B 536 8 HET SO4 A1001 5 HET GOL A1002 6 HET IHP B1003 36 HET GOL B1004 6 HET GOL B1005 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL 3(C3 H8 O3) FORMUL 5 IHP C6 H18 O24 P6 FORMUL 8 HOH *80(H2 O) HELIX 1 1 ASP A 316 TYR A 325 1 10 HELIX 2 2 THR A 339 GLU A 353 1 15 HELIX 3 3 GLN A 365 GLU A 378 1 14 HELIX 4 4 ASP A 416 GLY A 425 1 10 HELIX 5 5 ARG A 426 GLY A 428 5 3 HELIX 6 6 ASP A 442 PHE A 456 1 15 HELIX 7 7 ASP A 468 ASP A 482 1 15 HELIX 8 8 THR B 244 ILE B 267 1 24 HELIX 9 9 ILE B 267 ALA B 274 1 8 HELIX 10 10 ASP B 275 ASN B 290 1 16 HELIX 11 11 PRO B 291 LEU B 296 1 6 HELIX 12 12 SER B 299 ASP B 316 1 18 HELIX 13 13 ASP B 320 LYS B 346 1 27 HELIX 14 14 SER B 349 PHE B 364 1 16 HELIX 15 15 GLU B 366 CYS B 379 1 14 HELIX 16 16 PRO B 380 GLY B 384 5 5 HELIX 17 17 THR B 391 MSE B 398 1 8 HELIX 18 18 ASP B 410 LEU B 431 1 22 HELIX 19 19 ILE B 447 ASN B 459 1 13 HELIX 20 20 PRO B 461 ILE B 465 5 5 HELIX 21 21 THR B 466 GLY B 489 1 24 HELIX 22 22 GLY B 489 GLU B 501 1 13 HELIX 23 23 GLU B 501 MSE B 507 1 7 HELIX 24 24 ALA B 508 LYS B 511 5 4 HELIX 25 25 TYR B 512 ASN B 527 1 16 SHEET 1 A 7 VAL A 357 LEU A 360 0 SHEET 2 A 7 VAL A 383 THR A 386 1 O ILE A 385 N LEU A 360 SHEET 3 A 7 SER A 332 PHE A 336 1 N ILE A 335 O LEU A 384 SHEET 4 A 7 VAL A 399 ASN A 404 1 O VAL A 403 N ILE A 334 SHEET 5 A 7 VAL A 435 VAL A 440 1 O ILE A 437 N VAL A 402 SHEET 6 A 7 LYS A 305 ASP A 310 1 N LYS A 305 O ALA A 436 SHEET 7 A 7 THR A 462 PRO A 465 1 O VAL A 464 N TYR A 308 LINK C TYR A 308 N MSE A 309 1555 1555 1.33 LINK C MSE A 309 N ASP A 310 1555 1555 1.33 LINK C VAL A 327 N MSE A 328 1555 1555 1.33 LINK C MSE A 328 N THR A 329 1555 1555 1.33 LINK C SER A 400 N MSE A 401 1555 1555 1.33 LINK C MSE A 401 N VAL A 402 1555 1555 1.33 LINK C GLU A 460 N MSE A 461 1555 1555 1.33 LINK C MSE A 461 N THR A 462 1555 1555 1.33 LINK C LYS B 251 N MSE B 252 1555 1555 1.33 LINK C MSE B 252 N PHE B 253 1555 1555 1.33 LINK C PHE B 371 N MSE B 372 1555 1555 1.33 LINK C MSE B 372 N ALA B 373 1555 1555 1.33 LINK C ASN B 397 N MSE B 398 1555 1555 1.33 LINK C MSE B 398 N GLY B 399 1555 1555 1.33 LINK C ARG B 417 N MSE B 418 1555 1555 1.33 LINK C MSE B 418 N GLY B 419 1555 1555 1.33 LINK C ARG B 506 N MSE B 507 1555 1555 1.33 LINK C MSE B 507 N ALA B 508 1555 1555 1.33 LINK C ASN B 529 N MSE B 530 1555 1555 1.33 LINK C MSE B 530 N GLU B 531 1555 1555 1.33 LINK C GLU B 535 N MSE B 536 1555 1555 1.33 LINK C MSE B 536 N SER B 537 1555 1555 1.33 SITE 1 AC1 4 THR A 339 LYS A 340 HOH A1008 LYS B 510 SITE 1 AC2 8 VAL A 389 ASP A 406 LEU A 407 THR A 409 SITE 2 AC2 8 ARG A 423 HOH A1018 LEU B 462 ASN B 463 SITE 1 AC3 12 LYS A 477 LYS A 481 LYS B 264 LYS B 333 SITE 2 AC3 12 HIS B 337 ARG B 374 LYS B 377 LYS B 378 SITE 3 AC3 12 HOH B1037 HOH B1047 HOH B1048 HOH B1076 SITE 1 AC4 6 ILE B 389 ASN B 411 ASP B 415 THR B 466 SITE 2 AC4 6 ASN B 467 HOH B1052 SITE 1 AC5 6 PHE B 246 ILE B 249 GLY B 384 THR B 386 SITE 2 AC5 6 ARG B 456 PRO B 461 CRYST1 110.867 110.867 201.914 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009020 0.005208 0.000000 0.00000 SCALE2 0.000000 0.010415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004953 0.00000