HEADER HYDROLASE 27-OCT-10 3PEZ OBSLTE 18-MAY-11 3PEZ 3RRM TITLE S. CEREVISIAE DBP5 L327V BOUND TO NUP159, GLE1 H337R, IP6 AND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE DBP5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEAD BOX PROTEIN 5, HELICASE CA5/6, RIBONUCLEIC ACID- COMPND 5 TRAFFICKING PROTEIN 8; COMPND 6 EC: 3.6.4.13; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEOPORIN GLE1; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: NUCLEAR PORE PROTEIN GLE1, RNA EXPORT FACTOR GLE1; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: NUCLEOPORIN NUP159; COMPND 17 CHAIN: C; COMPND 18 SYNONYM: NUCLEAR PORE PROTEIN NUP159; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: DBP5, RAT8, YOR046C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 GENE: BRR3, D1049, GLE1, RSS1, YDL207W; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 21 ORGANISM_COMMON: YEAST; SOURCE 22 ORGANISM_TAXID: 4932; SOURCE 23 GENE: NUP158, NUP159, RAT7, YIL115C; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 27 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RECA, DEAD-BOX, HEAT-REPEAT, BETA-PROPELLER, ATPASE, HELICASE, MRNA- KEYWDS 2 EXPORT, NUCLEAR PORE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.MONTPETIT,N.D.THOMSEN,K.J.HELMKE,M.A.SEELIGER,J.M.BERGER,K.WEIS REVDAT 3 18-MAY-11 3PEZ 1 OBSLTE REVDAT 2 27-APR-11 3PEZ 1 JRNL REVDAT 1 23-MAR-11 3PEZ 0 JRNL AUTH B.MONTPETIT,N.D.THOMSEN,K.J.HELMKE,M.A.SEELIGER,J.M.BERGER, JRNL AUTH 2 K.WEIS JRNL TITL A CONSERVED MECHANISM OF DEAD-BOX ATPASE ACTIVATION BY JRNL TITL 2 NUCLEOPORINS AND INSP(6) IN MRNA EXPORT. JRNL REF NATURE V. 472 238 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21441902 JRNL DOI 10.1038/NATURE09862 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 29959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2745 - 6.3902 1.00 2701 154 0.2059 0.2295 REMARK 3 2 6.3902 - 5.0739 1.00 2636 148 0.2256 0.2449 REMARK 3 3 5.0739 - 4.4330 1.00 2599 149 0.1789 0.2355 REMARK 3 4 4.4330 - 4.0279 1.00 2623 135 0.1948 0.2321 REMARK 3 5 4.0279 - 3.7393 1.00 2589 144 0.2155 0.2763 REMARK 3 6 3.7393 - 3.5189 1.00 2648 112 0.2308 0.2238 REMARK 3 7 3.5189 - 3.3427 1.00 2590 142 0.2567 0.3020 REMARK 3 8 3.3427 - 3.1973 1.00 2579 146 0.2792 0.3174 REMARK 3 9 3.1973 - 3.0742 1.00 2592 140 0.3001 0.2996 REMARK 3 10 3.0742 - 2.9681 1.00 2596 129 0.3236 0.3636 REMARK 3 11 2.9681 - 2.8753 0.88 2290 117 0.3397 0.3665 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 22.21 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.40730 REMARK 3 B22 (A**2) : -1.22200 REMARK 3 B33 (A**2) : 14.62930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.80280 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 8478 REMARK 3 ANGLE : 0.532 11497 REMARK 3 CHIRALITY : 0.037 1327 REMARK 3 PLANARITY : 0.002 1464 REMARK 3 DIHEDRAL : 16.365 3213 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 90:295 REMARK 3 ORIGIN FOR THE GROUP (A): 77.0591 -25.5171 53.2606 REMARK 3 T TENSOR REMARK 3 T11: 0.8637 T22: 0.6109 REMARK 3 T33: 0.5519 T12: -0.0326 REMARK 3 T13: -0.0969 T23: -0.1311 REMARK 3 L TENSOR REMARK 3 L11: 2.5272 L22: 1.6843 REMARK 3 L33: 3.7361 L12: 0.0626 REMARK 3 L13: 1.2223 L23: -0.2063 REMARK 3 S TENSOR REMARK 3 S11: 0.3979 S12: 0.0916 S13: -0.1888 REMARK 3 S21: -0.2540 S22: -0.4084 S23: 0.2971 REMARK 3 S31: 0.6863 S32: -0.4638 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 299:482 REMARK 3 ORIGIN FOR THE GROUP (A): 93.5322 -9.2630 27.2223 REMARK 3 T TENSOR REMARK 3 T11: 0.4407 T22: 0.4275 REMARK 3 T33: 0.6487 T12: -0.0117 REMARK 3 T13: -0.0314 T23: -0.0834 REMARK 3 L TENSOR REMARK 3 L11: 3.6384 L22: 4.1393 REMARK 3 L33: 2.2536 L12: -0.9942 REMARK 3 L13: 0.4517 L23: -0.5099 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.2794 S13: 0.2540 REMARK 3 S21: 0.2014 S22: -0.2027 S23: -0.2017 REMARK 3 S31: 0.0494 S32: -0.0771 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 65.6947 -9.2196 16.6319 REMARK 3 T TENSOR REMARK 3 T11: 0.3943 T22: 0.4912 REMARK 3 T33: 0.4341 T12: 0.0523 REMARK 3 T13: -0.0678 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 4.9342 L22: 2.5173 REMARK 3 L33: 2.5622 L12: 1.1171 REMARK 3 L13: -1.2182 L23: -0.8490 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: 0.2782 S13: 0.1773 REMARK 3 S21: -0.1415 S22: 0.0594 S23: 0.0440 REMARK 3 S31: 0.1202 S32: -0.3574 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 89.3565 -7.6003 84.8626 REMARK 3 T TENSOR REMARK 3 T11: 0.5072 T22: 0.4310 REMARK 3 T33: 0.4429 T12: -0.0891 REMARK 3 T13: 0.0614 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 4.1839 L22: 1.8559 REMARK 3 L33: 2.4738 L12: -0.2744 REMARK 3 L13: 0.2263 L23: 0.5418 REMARK 3 S TENSOR REMARK 3 S11: 0.0527 S12: -0.4652 S13: 0.1886 REMARK 3 S21: 0.1993 S22: -0.1890 S23: -0.0236 REMARK 3 S31: 0.0883 S32: -0.1787 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 78.0404 -20.9816 38.6346 REMARK 3 T TENSOR REMARK 3 T11: 0.8909 T22: 2.2566 REMARK 3 T33: 0.8674 T12: 0.2257 REMARK 3 T13: 0.0559 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 0.0113 L22: 0.0051 REMARK 3 L33: 0.0108 L12: 0.0025 REMARK 3 L13: -0.0108 L23: -0.0007 REMARK 3 S TENSOR REMARK 3 S11: -0.2822 S12: -0.0496 S13: -0.1707 REMARK 3 S21: 0.1066 S22: -0.2811 S23: -0.2604 REMARK 3 S31: -0.0647 S32: 0.0611 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 78.0598 -12.3215 6.2823 REMARK 3 T TENSOR REMARK 3 T11: 0.6246 T22: 0.7997 REMARK 3 T33: 0.6696 T12: -0.0691 REMARK 3 T13: 0.1465 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 0.0041 L22: 0.0256 REMARK 3 L33: 0.0217 L12: -0.0043 REMARK 3 L13: 0.0053 L23: -0.0026 REMARK 3 S TENSOR REMARK 3 S11: -0.1674 S12: 0.0576 S13: -0.1756 REMARK 3 S21: -0.0811 S22: -0.1292 S23: -0.1502 REMARK 3 S31: 0.1863 S32: 0.0193 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PEZ COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-10. REMARK 100 THE RCSB ID CODE IS RCSB062296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.116 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29961 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.66800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 200 MM KOAC, 20 MM REMARK 280 SARCOSINE, 10 MM HEPES PH 7.5, 100 MM NACL, 1 MM DTT, 0.5 MM IP6, REMARK 280 10 MM MGCL2, 1 MM ADP, 5% GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 93.45600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.99100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 93.45600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.99100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 88 REMARK 465 ALA A 89 REMARK 465 MET A 90 REMARK 465 ALA A 91 REMARK 465 LYS A 92 REMARK 465 SER A 93 REMARK 465 PHE A 94 REMARK 465 ASP A 95 REMARK 465 GLU A 96 REMARK 465 LEU A 97 REMARK 465 GLN A 295 REMARK 465 THR A 296 REMARK 465 ASN A 297 REMARK 465 GLU A 298 REMARK 465 VAL A 389 REMARK 465 LEU A 390 REMARK 465 ALA A 391 REMARK 465 ARG A 392 REMARK 465 GLY A 393 REMARK 465 ILE A 394 REMARK 465 GLY B 242 REMARK 465 ALA B 243 REMARK 465 ILE C 349 REMARK 465 LEU C 350 REMARK 465 GLU C 351 REMARK 465 PRO C 352 REMARK 465 CYS C 353 REMARK 465 SER C 354 REMARK 465 GLY C 355 REMARK 465 VAL C 356 REMARK 465 ASP C 357 REMARK 465 THR C 358 REMARK 465 ILE C 359 REMARK 465 GLU C 360 REMARK 465 VAL C 382 REMARK 465 ALA C 383 REMARK 465 ALA C 384 REMARK 465 ILE C 385 REMARK 465 LYS C 386 REMARK 465 SER C 387 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 196 76.39 -112.58 REMARK 500 PRO A 397 -167.58 -68.75 REMARK 500 PHE A 430 48.78 71.44 REMARK 500 ASP A 458 45.76 -101.45 REMARK 500 ILE B 267 -50.84 -132.42 REMARK 500 ASN B 298 2.81 -69.33 REMARK 500 THR B 341 -68.40 -101.07 REMARK 500 CYS B 379 79.62 -153.09 REMARK 500 ALA B 480 22.50 -156.07 REMARK 500 GLU B 501 -65.17 -107.70 REMARK 500 LYS C 5 -162.28 -124.66 REMARK 500 ASP C 97 30.42 -86.27 REMARK 500 PRO C 127 155.15 -45.32 REMARK 500 ASN C 135 -123.49 54.60 REMARK 500 ASN C 145 25.02 83.18 REMARK 500 ASP C 180 3.40 -68.86 REMARK 500 ARG C 189 75.32 -155.63 REMARK 500 ASP C 244 76.20 -112.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 IHP B 1 O43 REMARK 620 2 IHP B 1 O24 59.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2 DBREF 3PEZ A 91 482 UNP P20449 DBP5_YEAST 91 482 DBREF 3PEZ B 244 538 UNP Q12315 GLE1_YEAST 244 538 DBREF 3PEZ C 2 387 UNP P40477 NU159_YEAST 2 387 SEQADV 3PEZ GLY A 88 UNP P20449 EXPRESSION TAG SEQADV 3PEZ ALA A 89 UNP P20449 EXPRESSION TAG SEQADV 3PEZ MET A 90 UNP P20449 EXPRESSION TAG SEQADV 3PEZ VAL A 327 UNP P20449 LEU 327 ENGINEERED MUTATION SEQADV 3PEZ GLY B 242 UNP Q12315 EXPRESSION TAG SEQADV 3PEZ ALA B 243 UNP Q12315 EXPRESSION TAG SEQADV 3PEZ ARG B 337 UNP Q12315 HIS 337 ENGINEERED MUTATION SEQADV 3PEZ GLY C 0 UNP P40477 EXPRESSION TAG SEQADV 3PEZ ALA C 1 UNP P40477 EXPRESSION TAG SEQRES 1 A 395 GLY ALA MET ALA LYS SER PHE ASP GLU LEU GLY LEU ALA SEQRES 2 A 395 PRO GLU LEU LEU LYS GLY ILE TYR ALA MET LYS PHE GLN SEQRES 3 A 395 LYS PRO SER LYS ILE GLN GLU ARG ALA LEU PRO LEU LEU SEQRES 4 A 395 LEU HIS ASN PRO PRO ARG ASN MET ILE ALA GLN SER GLN SEQRES 5 A 395 SER GLY THR GLY LYS THR ALA ALA PHE SER LEU THR MET SEQRES 6 A 395 LEU THR ARG VAL ASN PRO GLU ASP ALA SER PRO GLN ALA SEQRES 7 A 395 ILE CYS LEU ALA PRO SER ARG GLU LEU ALA ARG GLN THR SEQRES 8 A 395 LEU GLU VAL VAL GLN GLU MET GLY LYS PHE THR LYS ILE SEQRES 9 A 395 THR SER GLN LEU ILE VAL PRO ASP SER PHE GLU LYS ASN SEQRES 10 A 395 LYS GLN ILE ASN ALA GLN VAL ILE VAL GLY THR PRO GLY SEQRES 11 A 395 THR VAL LEU ASP LEU MET ARG ARG LYS LEU MET GLN LEU SEQRES 12 A 395 GLN LYS ILE LYS ILE PHE VAL LEU ASP GLU ALA ASP ASN SEQRES 13 A 395 MET LEU ASP GLN GLN GLY LEU GLY ASP GLN CYS ILE ARG SEQRES 14 A 395 VAL LYS ARG PHE LEU PRO LYS ASP THR GLN LEU VAL LEU SEQRES 15 A 395 PHE SER ALA THR PHE ALA ASP ALA VAL ARG GLN TYR ALA SEQRES 16 A 395 LYS LYS ILE VAL PRO ASN ALA ASN THR LEU GLU LEU GLN SEQRES 17 A 395 THR ASN GLU VAL ASN VAL ASP ALA ILE LYS GLN LEU TYR SEQRES 18 A 395 MET ASP CYS LYS ASN GLU ALA ASP LYS PHE ASP VAL LEU SEQRES 19 A 395 THR GLU LEU TYR GLY VAL MET THR ILE GLY SER SER ILE SEQRES 20 A 395 ILE PHE VAL ALA THR LYS LYS THR ALA ASN VAL LEU TYR SEQRES 21 A 395 GLY LYS LEU LYS SER GLU GLY HIS GLU VAL SER ILE LEU SEQRES 22 A 395 HIS GLY ASP LEU GLN THR GLN GLU ARG ASP ARG LEU ILE SEQRES 23 A 395 ASP ASP PHE ARG GLU GLY ARG SER LYS VAL LEU ILE THR SEQRES 24 A 395 THR ASN VAL LEU ALA ARG GLY ILE ASP ILE PRO THR VAL SEQRES 25 A 395 SER MET VAL VAL ASN TYR ASP LEU PRO THR LEU ALA ASN SEQRES 26 A 395 GLY GLN ALA ASP PRO ALA THR TYR ILE HIS ARG ILE GLY SEQRES 27 A 395 ARG THR GLY ARG PHE GLY ARG LYS GLY VAL ALA ILE SER SEQRES 28 A 395 PHE VAL HIS ASP LYS ASN SER PHE ASN ILE LEU SER ALA SEQRES 29 A 395 ILE GLN LYS TYR PHE GLY ASP ILE GLU MET THR ARG VAL SEQRES 30 A 395 PRO THR ASP ASP TRP ASP GLU VAL GLU LYS ILE VAL LYS SEQRES 31 A 395 LYS VAL LEU LYS ASP SEQRES 1 B 297 GLY ALA THR ASN PHE ASP LYS ILE SER LYS MET PHE TRP SEQRES 2 B 297 HIS TYR LYS ASP LYS ILE ALA GLN ILE LYS GLN ASP ILE SEQRES 3 B 297 VAL LEU PRO ILE LYS LYS ALA ASP VAL ASN VAL ARG ASN SEQRES 4 B 297 LEU LEU SER ARG HIS LYS ARG LYS ILE ASN PRO LYS PHE SEQRES 5 B 297 GLY GLN LEU THR ASN SER ASN GLN GLN LEU PHE LYS ILE SEQRES 6 B 297 GLN ASN GLU LEU THR GLN LEU ILE ASN ASP THR LYS GLY SEQRES 7 B 297 ASP SER LEU ALA TYR HIS TRP ILE LEU ASN PHE ILE ALA SEQRES 8 B 297 LYS ALA VAL VAL ARG GLN ALA GLU THR GLU VAL ARG VAL SEQRES 9 B 297 LYS PRO GLU SER ALA LEU PRO LEU GLY LYS LEU THR LEU SEQRES 10 B 297 TYR LEU LEU VAL GLN PHE PRO GLU LEU GLN GLU LEU PHE SEQRES 11 B 297 MET ALA ARG LEU VAL LYS LYS CYS PRO PHE VAL ILE GLY SEQRES 12 B 297 PHE THR CYS GLU ILE ASP THR GLU LYS GLY ARG GLN ASN SEQRES 13 B 297 MET GLY TRP LYS ARG ASN ASN GLU ASN LYS TRP GLU ASP SEQRES 14 B 297 ASN THR SER TYR ASP GLU ARG MET GLY GLY ILE LEU SER SEQRES 15 B 297 LEU PHE ALA ILE ILE THR ARG LEU GLN LEU PRO GLN GLU SEQRES 16 B 297 PHE ILE THR THR THR SER HIS PRO PHE PRO ILE ALA LEU SEQRES 17 B 297 SER TRP HIS ILE LEU ALA ARG ILE CYS ASN THR PRO LEU SEQRES 18 B 297 ASN LEU ILE THR ASN THR HIS PHE VAL ILE LEU GLY SER SEQRES 19 B 297 TRP TRP ASP ALA ALA ALA VAL GLN PHE LEU GLN ALA TYR SEQRES 20 B 297 GLY ASN GLN ALA SER LYS LEU LEU ILE LEU ILE GLY GLU SEQRES 21 B 297 GLU LEU THR SER ARG MET ALA GLU LYS LYS TYR VAL GLY SEQRES 22 B 297 ALA ALA ARG LEU ARG ILE LEU LEU GLU ALA TRP GLN ASN SEQRES 23 B 297 ASN ASN MET GLU SER PHE PRO GLU MET SER PRO SEQRES 1 C 388 GLY ALA SER SER LEU LYS ASP GLU VAL PRO THR GLU THR SEQRES 2 C 388 SER GLU ASP PHE GLY PHE LYS PHE LEU GLY GLN LYS GLN SEQRES 3 C 388 ILE LEU PRO SER PHE ASN GLU LYS LEU PRO PHE ALA SER SEQRES 4 C 388 LEU GLN ASN LEU ASP ILE SER ASN SER LYS SER LEU PHE SEQRES 5 C 388 VAL ALA ALA SER GLY SER LYS ALA VAL VAL GLY GLU LEU SEQRES 6 C 388 GLN LEU LEU ARG ASP HIS ILE THR SER ASP SER THR PRO SEQRES 7 C 388 LEU THR PHE LYS TRP GLU LYS GLU ILE PRO ASP VAL ILE SEQRES 8 C 388 PHE VAL CYS PHE HIS GLY ASP GLN VAL LEU VAL SER THR SEQRES 9 C 388 ARG ASN ALA LEU TYR SER LEU ASP LEU GLU GLU LEU SER SEQRES 10 C 388 GLU PHE ARG THR VAL THR SER PHE GLU LYS PRO VAL PHE SEQRES 11 C 388 GLN LEU LYS ASN VAL ASN ASN THR LEU VAL ILE LEU ASN SEQRES 12 C 388 SER VAL ASN ASP LEU SER ALA LEU ASP LEU ARG THR LYS SEQRES 13 C 388 SER THR LYS GLN LEU ALA GLN ASN VAL THR SER PHE ASP SEQRES 14 C 388 VAL THR ASN SER GLN LEU ALA VAL LEU LEU LYS ASP ARG SEQRES 15 C 388 SER PHE GLN SER PHE ALA TRP ARG ASN GLY GLU MET GLU SEQRES 16 C 388 LYS GLN PHE GLU PHE SER LEU PRO SER GLU LEU GLU GLU SEQRES 17 C 388 LEU PRO VAL GLU GLU TYR SER PRO LEU SER VAL THR ILE SEQRES 18 C 388 LEU SER PRO GLN ASP PHE LEU ALA VAL PHE GLY ASN VAL SEQRES 19 C 388 ILE SER GLU THR ASP ASP GLU VAL SER TYR ASP GLN LYS SEQRES 20 C 388 MET TYR ILE ILE LYS HIS ILE ASP GLY SER ALA SER PHE SEQRES 21 C 388 GLN GLU THR PHE ASP ILE THR PRO PRO PHE GLY GLN ILE SEQRES 22 C 388 VAL ARG PHE PRO TYR MET TYR LYS VAL THR LEU SER GLY SEQRES 23 C 388 LEU ILE GLU PRO ASP ALA ASN VAL ASN VAL LEU ALA SER SEQRES 24 C 388 SER CYS SER SER GLU VAL SER ILE TRP ASP SER LYS GLN SEQRES 25 C 388 VAL ILE GLU PRO SER GLN ASP SER GLU ARG ALA VAL LEU SEQRES 26 C 388 PRO ILE SER GLU GLU THR ASP LYS ASP THR ASN PRO ILE SEQRES 27 C 388 GLY VAL ALA VAL ASP VAL VAL THR SER GLY THR ILE LEU SEQRES 28 C 388 GLU PRO CYS SER GLY VAL ASP THR ILE GLU ARG LEU PRO SEQRES 29 C 388 LEU VAL TYR ILE LEU ASN ASN GLU GLY SER LEU GLN ILE SEQRES 30 C 388 VAL GLY LEU PHE HIS VAL ALA ALA ILE LYS SER HET ADP A 1 27 HET IHP B 1 36 HET MG B 2 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 IHP C6 H18 O24 P6 FORMUL 6 MG MG 2+ HELIX 1 1 ALA A 100 MET A 110 1 11 HELIX 2 2 SER A 116 HIS A 128 1 13 HELIX 3 3 GLY A 143 VAL A 156 1 14 HELIX 4 4 SER A 171 GLY A 186 1 16 HELIX 5 5 THR A 215 ARG A 225 1 11 HELIX 6 6 GLU A 240 GLN A 247 1 8 HELIX 7 7 GLY A 249 LEU A 261 1 13 HELIX 8 8 ALA A 275 VAL A 286 1 12 HELIX 9 9 ASN A 300 ASP A 302 5 3 HELIX 10 10 ASN A 313 ALA A 315 5 3 HELIX 11 11 ASP A 316 TYR A 325 1 10 HELIX 12 12 THR A 339 GLU A 353 1 15 HELIX 13 13 GLN A 365 GLU A 378 1 14 HELIX 14 14 ASP A 416 ARG A 426 1 11 HELIX 15 15 ASP A 442 GLY A 457 1 16 HELIX 16 16 ASP A 468 ASP A 482 1 15 HELIX 17 17 THR B 244 ILE B 267 1 24 HELIX 18 18 ILE B 267 ALA B 274 1 8 HELIX 19 19 ASP B 275 ASN B 290 1 16 HELIX 20 20 PRO B 291 GLN B 295 5 5 HELIX 21 21 SER B 299 ASP B 316 1 18 HELIX 22 22 ASP B 320 LYS B 346 1 27 HELIX 23 23 SER B 349 PHE B 364 1 16 HELIX 24 24 GLU B 366 CYS B 379 1 14 HELIX 25 25 PRO B 380 GLY B 384 5 5 HELIX 26 26 THR B 391 MET B 398 1 8 HELIX 27 27 ASP B 410 LEU B 431 1 22 HELIX 28 28 PRO B 434 THR B 439 1 6 HELIX 29 29 ILE B 447 THR B 460 1 14 HELIX 30 30 THR B 466 GLY B 489 1 24 HELIX 31 31 GLY B 489 GLU B 501 1 13 HELIX 32 32 GLU B 501 MET B 507 1 7 HELIX 33 33 ALA B 508 LYS B 511 5 4 HELIX 34 34 TYR B 512 ASN B 527 1 16 HELIX 35 35 LEU C 64 SER C 73 1 10 HELIX 36 36 PRO C 202 GLU C 207 1 6 HELIX 37 37 GLN C 317 ARG C 321 5 5 SHEET 1 A 7 SER A 193 ILE A 196 0 SHEET 2 A 7 VAL A 211 GLY A 214 1 O VAL A 211 N GLN A 194 SHEET 3 A 7 ALA A 165 LEU A 168 1 N CYS A 167 O ILE A 212 SHEET 4 A 7 ILE A 235 LEU A 238 1 O VAL A 237 N ILE A 166 SHEET 5 A 7 GLN A 266 PHE A 270 1 O GLN A 266 N PHE A 236 SHEET 6 A 7 MET A 134 GLN A 137 1 N MET A 134 O LEU A 269 SHEET 7 A 7 ASN A 290 GLU A 293 1 O LEU A 292 N GLN A 137 SHEET 1 B 7 VAL A 357 LEU A 360 0 SHEET 2 B 7 VAL A 383 THR A 386 1 O ILE A 385 N LEU A 360 SHEET 3 B 7 SER A 333 PHE A 336 1 N ILE A 335 O LEU A 384 SHEET 4 B 7 MET A 401 ASN A 404 1 O VAL A 403 N PHE A 336 SHEET 5 B 7 GLY A 434 VAL A 440 1 O VAL A 435 N VAL A 402 SHEET 6 B 7 ILE A 304 ASP A 310 1 N LYS A 305 O ALA A 436 SHEET 7 B 7 MET A 461 PRO A 465 1 O VAL A 464 N ASP A 310 SHEET 1 C 5 SER C 3 LEU C 4 0 SHEET 2 C 5 SER C 256 THR C 262 1 O PHE C 259 N SER C 3 SHEET 3 C 5 GLN C 245 ILE C 253 -1 N ILE C 249 O GLN C 260 SHEET 4 C 5 ASP C 225 GLY C 231 -1 N PHE C 230 O LYS C 246 SHEET 5 C 5 SER C 214 ILE C 220 -1 N LEU C 216 O VAL C 229 SHEET 1 D 5 THR C 10 SER C 13 0 SHEET 2 D 5 VAL C 312 PRO C 315 1 O GLU C 314 N GLU C 11 SHEET 3 D 5 SER C 305 TRP C 307 -1 N ILE C 306 O ILE C 313 SHEET 4 D 5 ASN C 292 SER C 298 -1 N LEU C 296 O SER C 305 SHEET 5 D 5 MET C 278 SER C 284 -1 N TYR C 279 O ALA C 297 SHEET 1 E 4 GLY C 17 GLN C 25 0 SHEET 2 E 4 SER C 373 PHE C 380 -1 O LEU C 374 N LYS C 24 SHEET 3 E 4 LEU C 364 LEU C 368 -1 N VAL C 365 O VAL C 377 SHEET 4 E 4 GLY C 338 ASP C 342 -1 N ALA C 340 O TYR C 366 SHEET 1 F 4 LEU C 42 SER C 45 0 SHEET 2 F 4 LEU C 50 SER C 55 -1 O VAL C 52 N ASP C 43 SHEET 3 F 4 LYS C 58 GLU C 63 -1 O VAL C 60 N ALA C 53 SHEET 4 F 4 TRP C 82 GLU C 85 -1 O LYS C 84 N ALA C 59 SHEET 1 G 4 PHE C 91 HIS C 95 0 SHEET 2 G 4 GLN C 98 SER C 102 -1 O LEU C 100 N CYS C 93 SHEET 3 G 4 ALA C 106 ASP C 111 -1 O TYR C 108 N VAL C 101 SHEET 4 G 4 PHE C 118 SER C 123 -1 O THR C 122 N LEU C 107 SHEET 1 H 4 VAL C 128 VAL C 134 0 SHEET 2 H 4 THR C 137 ASN C 142 -1 O LEU C 141 N GLN C 130 SHEET 3 H 4 LEU C 147 ASP C 151 -1 O LEU C 150 N LEU C 138 SHEET 4 H 4 THR C 157 ALA C 161 -1 O LYS C 158 N ALA C 149 SHEET 1 I 4 VAL C 164 VAL C 169 0 SHEET 2 I 4 GLN C 173 LEU C 178 -1 O LEU C 177 N SER C 166 SHEET 3 I 4 PHE C 183 ARG C 189 -1 O PHE C 186 N LEU C 174 SHEET 4 I 4 GLU C 192 PHE C 199 -1 O GLU C 194 N ALA C 187 LINK O43 IHP B 1 MG MG B 2 1555 1555 2.87 LINK O24 IHP B 1 MG MG B 2 1555 1555 2.90 CISPEP 1 ASN A 129 PRO A 130 0 2.52 SITE 1 AC1 14 PHE A 112 LYS A 114 SER A 116 GLN A 119 SITE 2 AC1 14 GLN A 139 SER A 140 GLY A 141 THR A 142 SITE 3 AC1 14 GLY A 143 LYS A 144 THR A 145 ALA A 146 SITE 4 AC1 14 ASP A 395 PHE A 430 SITE 1 AC2 8 LYS A 477 LYS A 481 MG B 2 LYS B 264 SITE 2 AC2 8 LYS B 333 ARG B 374 LYS B 377 LYS B 378 SITE 1 AC3 1 IHP B 1 CRYST1 186.912 67.982 132.392 90.00 127.52 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005350 0.000000 0.004109 0.00000 SCALE2 0.000000 0.014710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009524 0.00000