data_3PF5 # _entry.id 3PF5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3PF5 pdb_00003pf5 10.2210/pdb3pf5/pdb NDB NA0829 ? ? RCSB RCSB062302 ? ? WWPDB D_1000062302 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1CSP 'CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS MAJOR COLD SHOCK PROTEIN, CSPB: A UNIVERSAL NUCLEIC-ACID BINDING DOMAIN' unspecified PDB 2HAX 'Crystal structure of Bacillus caldolyticus cold shock protein in complex with hexathymidine' unspecified PDB 2ES2 'Crystal Structure Analysis of the Bacillus Subtilis Cold Shock Protein Bs-CspB in Complex with Hexathymidine' unspecified PDB 2F52 'Solution structure of cold shock protein CspB from Bacillus subtilis in complex with heptathymidine' unspecified PDB 1C9O 'CRYSTAL STRUCTURE ANALYSIS OF THE BACILLUS CALDOLYTICUS COLD SHOCK PROTEIN BC-CSP' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3PF5 _pdbx_database_status.recvd_initial_deposition_date 2010-10-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sachs, R.' 1 'Max, K.E.A.' 2 'Heinemann, U.' 3 # _citation.id primary _citation.title 'RNA single strands bind to a conserved surface of the major cold shock protein in crystals and solution.' _citation.journal_abbrev Rna _citation.journal_volume 18 _citation.page_first 65 _citation.page_last 76 _citation.year 2012 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22128343 _citation.pdbx_database_id_DOI 10.1261/rna.02809212 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sachs, R.' 1 ? primary 'Max, K.E.' 2 ? primary 'Heinemann, U.' 3 ? primary 'Balbach, J.' 4 ? # _cell.entry_id 3PF5 _cell.length_a 49.038 _cell.length_b 49.769 _cell.length_c 57.380 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3PF5 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cold shock protein cspB' 7372.126 2 ? ? ? ? 2 polymer syn 'hexaribouracil (rU6)' 1792.037 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 178 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Major cold shock protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MLEGKVKWFNSEKGFGFIEVEGQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNRGPQAANVTKEA MLEGKVKWFNSEKGFGFIEVEGQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNRGPQAANVTKEA A,B ? 2 polyribonucleotide no no UUUUUU UUUUUU R,S ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 GLU n 1 4 GLY n 1 5 LYS n 1 6 VAL n 1 7 LYS n 1 8 TRP n 1 9 PHE n 1 10 ASN n 1 11 SER n 1 12 GLU n 1 13 LYS n 1 14 GLY n 1 15 PHE n 1 16 GLY n 1 17 PHE n 1 18 ILE n 1 19 GLU n 1 20 VAL n 1 21 GLU n 1 22 GLY n 1 23 GLN n 1 24 ASP n 1 25 ASP n 1 26 VAL n 1 27 PHE n 1 28 VAL n 1 29 HIS n 1 30 PHE n 1 31 SER n 1 32 ALA n 1 33 ILE n 1 34 GLN n 1 35 GLY n 1 36 GLU n 1 37 GLY n 1 38 PHE n 1 39 LYS n 1 40 THR n 1 41 LEU n 1 42 GLU n 1 43 GLU n 1 44 GLY n 1 45 GLN n 1 46 ALA n 1 47 VAL n 1 48 SER n 1 49 PHE n 1 50 GLU n 1 51 ILE n 1 52 VAL n 1 53 GLU n 1 54 GLY n 1 55 ASN n 1 56 ARG n 1 57 GLY n 1 58 PRO n 1 59 GLN n 1 60 ALA n 1 61 ALA n 1 62 ASN n 1 63 VAL n 1 64 THR n 1 65 LYS n 1 66 GLU n 1 67 ALA n 2 1 U n 2 2 U n 2 3 U n 2 4 U n 2 5 U n 2 6 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BSU09100, cspA, cspB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'chemically synthesized' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CSPB_BACSU P32081 1 MLEGKVKWFNSEKGFGFIEVEGQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNRGPQAANVTKEA 1 ? 2 PDB 3PF5 3PF5 2 UUUUUU ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3PF5 A 1 ? 67 ? P32081 1 ? 67 ? 1 67 2 1 3PF5 B 1 ? 67 ? P32081 1 ? 67 ? 1 67 3 2 3PF5 R 1 ? 6 ? 3PF5 0 ? 5 ? 0 5 4 2 3PF5 S 1 ? 6 ? 3PF5 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3PF5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_percent_sol 35.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details ;protein buffer: 50mM TRIS, 20mM Na-HEPES, pH 7.5; Bs-CspB.rU6 complex concentration: 70mg/ml; crystallization buffer: 31% PEG 3350, 0.25M MgCl2, 0.1M TRIS pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293.15K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2009-02-12 _diffrn_detector.details 'mirrors, slits' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si-111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3PF5 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 17.50 _reflns.d_resolution_high 1.68 _reflns.number_obs 15961 _reflns.number_all 15961 _reflns.percent_possible_obs 96.08 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.079 _reflns.pdbx_netI_over_sigmaI 10.48 _reflns.B_iso_Wilson_estimate 25.148 _reflns.pdbx_redundancy 2.87 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.68 _reflns_shell.d_res_low 1.72 _reflns_shell.percent_possible_all 93.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.545 _reflns_shell.meanI_over_sigI_obs 1.85 _reflns_shell.pdbx_redundancy 2.84 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1033 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3PF5 _refine.ls_number_reflns_obs 15162 _refine.ls_number_reflns_all 15162 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 17.46 _refine.ls_d_res_high 1.68 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.18252 _refine.ls_R_factor_all 0.18252 _refine.ls_R_factor_R_work 0.17980 _refine.ls_R_factor_R_free 0.23466 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 798 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.927 _refine.B_iso_mean 16.765 _refine.aniso_B[1][1] -0.44 _refine.aniso_B[2][2] 1.65 _refine.aniso_B[3][3] -1.21 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1CSP' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'ISOTROPIC + TLS' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.120 _refine.overall_SU_ML 0.081 _refine.overall_SU_B 4.445 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.115 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3PF5 _refine_analyze.Luzzati_coordinate_error_obs 0.217 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1036 _refine_hist.pdbx_number_atoms_nucleic_acid 117 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 178 _refine_hist.number_atoms_total 1332 _refine_hist.d_res_high 1.68 _refine_hist.d_res_low 17.46 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1219 'X-RAY DIFFRACTION' ? r_bond_other_d 0.004 0.020 ? 791 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.459 2.062 ? 1673 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.981 3.000 ? 1949 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.846 5.000 ? 143 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.330 26.207 ? 58 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.619 15.000 ? 186 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 24.603 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.068 0.200 ? 185 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1311 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 245 'X-RAY DIFFRACTION' ? r_nbd_refined 0.187 0.200 ? 178 'X-RAY DIFFRACTION' ? r_nbd_other 0.173 0.200 ? 797 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.183 0.200 ? 585 'X-RAY DIFFRACTION' ? r_nbtor_other 0.086 0.200 ? 658 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.108 0.200 ? 127 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.009 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.149 0.200 ? 25 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.237 0.200 ? 59 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.094 0.200 ? 15 'X-RAY DIFFRACTION' ? r_mcbond_it 1.093 2.000 ? 862 'X-RAY DIFFRACTION' ? r_mcbond_other 0.283 2.000 ? 286 'X-RAY DIFFRACTION' ? r_mcangle_it 1.341 3.000 ? 1064 'X-RAY DIFFRACTION' ? r_scbond_it 2.603 4.500 ? 654 'X-RAY DIFFRACTION' ? r_scangle_it 3.465 6.000 ? 601 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.680 _refine_ls_shell.d_res_low 1.723 _refine_ls_shell.number_reflns_R_work 1071 _refine_ls_shell.R_factor_R_work 0.220 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.332 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 56 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3PF5 _struct.title 'Crystal structure of Bs-CspB in complex with rU6' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PF5 _struct_keywords.pdbx_keywords 'GENE REGULATION/RNA' _struct_keywords.text ;BETA BARREL, PROTEIN-RNA complex, COLD SHOCK RESPONSE, TRANSCRIPTION REGULATION, TRANSLATION REGULATION, OB fold, cold shock domain, RNA/DNA binding, single-stranded RNA and DNA, cytosol, GENE REGULATION-RNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 31 ? ILE A 33 ? SER A 31 ILE A 33 5 ? 3 HELX_P HELX_P2 2 SER B 31 ? ILE B 33 ? SER B 31 ILE B 33 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 68 A HOH 87 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc2 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 68 A HOH 88 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc3 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 68 A HOH 89 1_555 ? ? ? ? ? ? ? 1.981 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 68 A HOH 93 1_555 ? ? ? ? ? ? ? 1.998 ? ? metalc5 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 68 A HOH 161 1_555 ? ? ? ? ? ? ? 2.210 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 68 A HOH 170 1_555 ? ? ? ? ? ? ? 2.038 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 26 ? HIS A 29 ? VAL A 26 HIS A 29 A 2 PHE A 15 ? GLU A 19 ? PHE A 15 GLU A 19 A 3 LEU A 2 ? ASN A 10 ? LEU A 2 ASN A 10 A 4 ALA A 46 ? GLY A 54 ? ALA A 46 GLY A 54 A 5 ALA B 46 ? GLY B 54 ? ALA B 46 GLY B 54 A 6 LEU B 2 ? ASN B 10 ? LEU B 2 ASN B 10 A 7 PHE B 15 ? VAL B 20 ? PHE B 15 VAL B 20 A 8 GLN B 23 ? HIS B 29 ? GLN B 23 HIS B 29 B 1 GLY A 57 ? GLU A 66 ? GLY A 57 GLU A 66 B 2 ALA A 46 ? GLY A 54 ? ALA A 46 GLY A 54 B 3 ALA B 46 ? GLY B 54 ? ALA B 46 GLY B 54 B 4 GLY B 57 ? LYS B 65 ? GLY B 57 LYS B 65 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 26 ? O VAL A 26 N ILE A 18 ? N ILE A 18 A 2 3 O PHE A 15 ? O PHE A 15 N ASN A 10 ? N ASN A 10 A 3 4 N LEU A 2 ? N LEU A 2 O PHE A 49 ? O PHE A 49 A 4 5 N GLU A 53 ? N GLU A 53 O ILE B 51 ? O ILE B 51 A 5 6 O PHE B 49 ? O PHE B 49 N LEU B 2 ? N LEU B 2 A 6 7 N LYS B 5 ? N LYS B 5 O GLU B 19 ? O GLU B 19 A 7 8 N ILE B 18 ? N ILE B 18 O VAL B 26 ? O VAL B 26 B 1 2 O GLN A 59 ? O GLN A 59 N VAL A 52 ? N VAL A 52 B 2 3 N GLU A 53 ? N GLU A 53 O ILE B 51 ? O ILE B 51 B 3 4 N VAL B 52 ? N VAL B 52 O GLN B 59 ? O GLN B 59 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 68 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 68' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH F . ? HOH A 87 . ? 1_555 ? 2 AC1 6 HOH F . ? HOH A 88 . ? 1_555 ? 3 AC1 6 HOH F . ? HOH A 89 . ? 1_555 ? 4 AC1 6 HOH F . ? HOH A 93 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 161 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 170 . ? 1_555 ? # _database_PDB_matrix.entry_id 3PF5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3PF5 _atom_sites.fract_transf_matrix[1][1] 0.020392 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020093 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017428 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 HIS 29 29 29 HIS HIS A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 ALA 67 67 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 LEU 2 2 2 LEU LEU B . n B 1 3 GLU 3 3 3 GLU GLU B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 LYS 5 5 5 LYS LYS B . n B 1 6 VAL 6 6 6 VAL VAL B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 TRP 8 8 8 TRP TRP B . n B 1 9 PHE 9 9 9 PHE PHE B . n B 1 10 ASN 10 10 10 ASN ASN B . n B 1 11 SER 11 11 11 SER SER B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 LYS 13 13 13 LYS LYS B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 PHE 15 15 15 PHE PHE B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 PHE 17 17 17 PHE PHE B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 GLU 19 19 19 GLU GLU B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 GLN 23 23 23 GLN GLN B . n B 1 24 ASP 24 24 24 ASP ASP B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 VAL 26 26 26 VAL VAL B . n B 1 27 PHE 27 27 27 PHE PHE B . n B 1 28 VAL 28 28 28 VAL VAL B . n B 1 29 HIS 29 29 29 HIS HIS B . n B 1 30 PHE 30 30 30 PHE PHE B . n B 1 31 SER 31 31 31 SER SER B . n B 1 32 ALA 32 32 32 ALA ALA B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 GLN 34 34 34 GLN GLN B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 GLU 36 36 36 GLU GLU B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 PHE 38 38 38 PHE PHE B . n B 1 39 LYS 39 39 39 LYS LYS B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 LEU 41 41 41 LEU LEU B . n B 1 42 GLU 42 42 42 GLU GLU B . n B 1 43 GLU 43 43 43 GLU GLU B . n B 1 44 GLY 44 44 44 GLY GLY B . n B 1 45 GLN 45 45 45 GLN GLN B . n B 1 46 ALA 46 46 46 ALA ALA B . n B 1 47 VAL 47 47 47 VAL VAL B . n B 1 48 SER 48 48 48 SER SER B . n B 1 49 PHE 49 49 49 PHE PHE B . n B 1 50 GLU 50 50 50 GLU GLU B . n B 1 51 ILE 51 51 51 ILE ILE B . n B 1 52 VAL 52 52 52 VAL VAL B . n B 1 53 GLU 53 53 53 GLU GLU B . n B 1 54 GLY 54 54 54 GLY GLY B . n B 1 55 ASN 55 55 55 ASN ASN B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 GLY 57 57 57 GLY GLY B . n B 1 58 PRO 58 58 58 PRO PRO B . n B 1 59 GLN 59 59 59 GLN GLN B . n B 1 60 ALA 60 60 60 ALA ALA B . n B 1 61 ALA 61 61 61 ALA ALA B . n B 1 62 ASN 62 62 62 ASN ASN B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 THR 64 64 64 THR THR B . n B 1 65 LYS 65 65 65 LYS LYS B . n B 1 66 GLU 66 66 66 GLU GLU B . n B 1 67 ALA 67 67 67 ALA ALA B . n C 2 1 U 1 0 ? ? ? R . n C 2 2 U 2 1 1 U U R . n C 2 3 U 3 2 2 U U R . n C 2 4 U 4 3 3 U U R . n C 2 5 U 5 4 4 U U R . n C 2 6 U 6 5 5 U U R . n D 2 1 U 1 1 1 U U S . n D 2 2 U 2 2 ? ? ? S . n D 2 3 U 3 3 ? ? ? S . n D 2 4 U 4 4 ? ? ? S . n D 2 5 U 5 5 ? ? ? S . n D 2 6 U 6 6 ? ? ? S . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG 1 68 1 MG MG A . F 4 HOH 1 69 69 HOH HOH A . F 4 HOH 2 70 70 HOH HOH A . F 4 HOH 3 71 71 HOH HOH A . F 4 HOH 4 72 72 HOH HOH A . F 4 HOH 5 73 73 HOH HOH A . F 4 HOH 6 74 74 HOH HOH A . F 4 HOH 7 75 75 HOH HOH A . F 4 HOH 8 76 76 HOH HOH A . F 4 HOH 9 77 1 HOH HOH A . F 4 HOH 10 78 78 HOH HOH A . F 4 HOH 11 79 79 HOH HOH A . F 4 HOH 12 80 80 HOH HOH A . F 4 HOH 13 81 81 HOH HOH A . F 4 HOH 14 82 82 HOH HOH A . F 4 HOH 15 83 83 HOH HOH A . F 4 HOH 16 84 84 HOH HOH A . F 4 HOH 17 85 2 HOH HOH A . F 4 HOH 18 86 3 HOH HOH A . F 4 HOH 19 87 4 HOH HOH A . F 4 HOH 20 88 5 HOH HOH A . F 4 HOH 21 89 6 HOH HOH A . F 4 HOH 22 90 7 HOH HOH A . F 4 HOH 23 91 8 HOH HOH A . F 4 HOH 24 92 9 HOH HOH A . F 4 HOH 25 93 93 HOH HOH A . F 4 HOH 26 94 94 HOH HOH A . F 4 HOH 27 95 95 HOH HOH A . F 4 HOH 28 96 96 HOH HOH A . F 4 HOH 29 97 97 HOH HOH A . F 4 HOH 30 98 10 HOH HOH A . F 4 HOH 31 99 11 HOH HOH A . F 4 HOH 32 100 12 HOH HOH A . F 4 HOH 33 101 13 HOH HOH A . F 4 HOH 34 102 14 HOH HOH A . F 4 HOH 35 103 15 HOH HOH A . F 4 HOH 36 104 104 HOH HOH A . F 4 HOH 37 105 105 HOH HOH A . F 4 HOH 38 106 106 HOH HOH A . F 4 HOH 39 107 18 HOH HOH A . F 4 HOH 40 108 19 HOH HOH A . F 4 HOH 41 109 109 HOH HOH A . F 4 HOH 42 110 20 HOH HOH A . F 4 HOH 43 111 111 HOH HOH A . F 4 HOH 44 112 112 HOH HOH A . F 4 HOH 45 113 113 HOH HOH A . F 4 HOH 46 114 114 HOH HOH A . F 4 HOH 47 115 21 HOH HOH A . F 4 HOH 48 116 22 HOH HOH A . F 4 HOH 49 117 117 HOH HOH A . F 4 HOH 50 118 118 HOH HOH A . F 4 HOH 51 119 119 HOH HOH A . F 4 HOH 52 120 120 HOH HOH A . F 4 HOH 53 121 121 HOH HOH A . F 4 HOH 54 122 122 HOH HOH A . F 4 HOH 55 123 24 HOH HOH A . F 4 HOH 56 124 124 HOH HOH A . F 4 HOH 57 125 125 HOH HOH A . F 4 HOH 58 126 26 HOH HOH A . F 4 HOH 59 127 28 HOH HOH A . F 4 HOH 60 128 29 HOH HOH A . F 4 HOH 61 129 63 HOH HOH A . F 4 HOH 62 130 130 HOH HOH A . F 4 HOH 63 131 68 HOH HOH A . F 4 HOH 64 132 132 HOH HOH A . F 4 HOH 65 133 61 HOH HOH A . F 4 HOH 66 134 134 HOH HOH A . F 4 HOH 67 140 140 HOH HOH A . F 4 HOH 68 141 141 HOH HOH A . F 4 HOH 69 142 142 HOH HOH A . F 4 HOH 70 146 146 HOH HOH A . F 4 HOH 71 148 148 HOH HOH A . F 4 HOH 72 154 154 HOH HOH A . F 4 HOH 73 158 158 HOH HOH A . F 4 HOH 74 159 159 HOH HOH A . F 4 HOH 75 161 161 HOH HOH A . F 4 HOH 76 163 163 HOH HOH A . F 4 HOH 77 169 169 HOH HOH A . F 4 HOH 78 170 170 HOH HOH A . F 4 HOH 79 171 171 HOH HOH A . F 4 HOH 80 174 174 HOH HOH A . F 4 HOH 81 177 177 HOH HOH A . F 4 HOH 82 181 181 HOH HOH A . F 4 HOH 83 183 183 HOH HOH A . F 4 HOH 84 185 185 HOH HOH A . F 4 HOH 85 186 186 HOH HOH A . G 4 HOH 1 68 16 HOH HOH B . G 4 HOH 2 69 17 HOH HOH B . G 4 HOH 3 70 23 HOH HOH B . G 4 HOH 4 71 25 HOH HOH B . G 4 HOH 5 72 30 HOH HOH B . G 4 HOH 6 73 31 HOH HOH B . G 4 HOH 7 74 32 HOH HOH B . G 4 HOH 8 75 33 HOH HOH B . G 4 HOH 9 76 34 HOH HOH B . G 4 HOH 10 77 77 HOH HOH B . G 4 HOH 11 78 36 HOH HOH B . G 4 HOH 12 79 37 HOH HOH B . G 4 HOH 13 80 38 HOH HOH B . G 4 HOH 14 81 41 HOH HOH B . G 4 HOH 15 82 42 HOH HOH B . G 4 HOH 16 83 43 HOH HOH B . G 4 HOH 17 84 44 HOH HOH B . G 4 HOH 18 85 45 HOH HOH B . G 4 HOH 19 86 86 HOH HOH B . G 4 HOH 20 87 87 HOH HOH B . G 4 HOH 21 88 88 HOH HOH B . G 4 HOH 22 89 89 HOH HOH B . G 4 HOH 23 90 90 HOH HOH B . G 4 HOH 24 91 91 HOH HOH B . G 4 HOH 25 92 46 HOH HOH B . G 4 HOH 26 93 48 HOH HOH B . G 4 HOH 27 94 49 HOH HOH B . G 4 HOH 28 95 50 HOH HOH B . G 4 HOH 29 96 51 HOH HOH B . G 4 HOH 30 97 52 HOH HOH B . G 4 HOH 31 98 98 HOH HOH B . G 4 HOH 32 99 99 HOH HOH B . G 4 HOH 33 100 100 HOH HOH B . G 4 HOH 34 101 101 HOH HOH B . G 4 HOH 35 102 54 HOH HOH B . G 4 HOH 36 103 103 HOH HOH B . G 4 HOH 37 104 55 HOH HOH B . G 4 HOH 38 105 56 HOH HOH B . G 4 HOH 39 106 57 HOH HOH B . G 4 HOH 40 107 58 HOH HOH B . G 4 HOH 41 108 108 HOH HOH B . G 4 HOH 42 109 59 HOH HOH B . G 4 HOH 43 110 110 HOH HOH B . G 4 HOH 44 111 60 HOH HOH B . G 4 HOH 45 112 64 HOH HOH B . G 4 HOH 46 113 65 HOH HOH B . G 4 HOH 47 114 66 HOH HOH B . G 4 HOH 48 115 115 HOH HOH B . G 4 HOH 49 116 116 HOH HOH B . G 4 HOH 50 117 67 HOH HOH B . G 4 HOH 51 118 102 HOH HOH B . G 4 HOH 52 123 123 HOH HOH B . G 4 HOH 53 126 126 HOH HOH B . G 4 HOH 54 127 127 HOH HOH B . G 4 HOH 55 128 128 HOH HOH B . G 4 HOH 56 129 129 HOH HOH B . G 4 HOH 57 131 131 HOH HOH B . G 4 HOH 58 133 133 HOH HOH B . G 4 HOH 59 135 135 HOH HOH B . G 4 HOH 60 136 136 HOH HOH B . G 4 HOH 61 137 137 HOH HOH B . G 4 HOH 62 138 138 HOH HOH B . G 4 HOH 63 139 139 HOH HOH B . G 4 HOH 64 143 143 HOH HOH B . G 4 HOH 65 144 144 HOH HOH B . G 4 HOH 66 145 145 HOH HOH B . G 4 HOH 67 147 147 HOH HOH B . G 4 HOH 68 150 150 HOH HOH B . G 4 HOH 69 151 151 HOH HOH B . G 4 HOH 70 152 152 HOH HOH B . G 4 HOH 71 153 153 HOH HOH B . G 4 HOH 72 156 156 HOH HOH B . G 4 HOH 73 157 157 HOH HOH B . G 4 HOH 74 160 160 HOH HOH B . G 4 HOH 75 162 162 HOH HOH B . G 4 HOH 76 164 164 HOH HOH B . G 4 HOH 77 165 165 HOH HOH B . G 4 HOH 78 166 166 HOH HOH B . G 4 HOH 79 168 168 HOH HOH B . G 4 HOH 80 172 172 HOH HOH B . G 4 HOH 81 173 173 HOH HOH B . G 4 HOH 82 176 176 HOH HOH B . G 4 HOH 83 178 178 HOH HOH B . G 4 HOH 84 179 179 HOH HOH B . G 4 HOH 85 182 182 HOH HOH B . G 4 HOH 86 184 184 HOH HOH B . H 4 HOH 1 35 35 HOH HOH R . H 4 HOH 2 53 53 HOH HOH R . H 4 HOH 3 149 149 HOH HOH R . H 4 HOH 4 155 155 HOH HOH R . H 4 HOH 5 167 167 HOH HOH R . H 4 HOH 6 180 180 HOH HOH R . H 4 HOH 7 187 187 HOH HOH R . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,F 2 1 B,C,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 320 ? 1 MORE -6 ? 1 'SSA (A^2)' 4660 ? 2 'ABSA (A^2)' 900 ? 2 MORE -7 ? 2 'SSA (A^2)' 5190 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? F HOH . ? A HOH 87 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 88 ? 1_555 86.4 ? 2 O ? F HOH . ? A HOH 87 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 89 ? 1_555 95.5 ? 3 O ? F HOH . ? A HOH 88 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 89 ? 1_555 176.0 ? 4 O ? F HOH . ? A HOH 87 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 93 ? 1_555 87.8 ? 5 O ? F HOH . ? A HOH 88 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 93 ? 1_555 88.8 ? 6 O ? F HOH . ? A HOH 89 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 93 ? 1_555 87.7 ? 7 O ? F HOH . ? A HOH 87 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 161 ? 1_555 87.3 ? 8 O ? F HOH . ? A HOH 88 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 161 ? 1_555 91.1 ? 9 O ? F HOH . ? A HOH 89 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 161 ? 1_555 92.5 ? 10 O ? F HOH . ? A HOH 93 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 161 ? 1_555 175.0 ? 11 O ? F HOH . ? A HOH 87 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 170 ? 1_555 174.7 ? 12 O ? F HOH . ? A HOH 88 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 170 ? 1_555 91.8 ? 13 O ? F HOH . ? A HOH 89 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 170 ? 1_555 86.6 ? 14 O ? F HOH . ? A HOH 93 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 170 ? 1_555 97.3 ? 15 O ? F HOH . ? A HOH 161 ? 1_555 MG ? E MG . ? A MG 68 ? 1_555 O ? F HOH . ? A HOH 170 ? 1_555 87.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-09-21 2 'Structure model' 1 1 2011-12-14 3 'Structure model' 1 2 2011-12-28 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" R U 2 ? B "O3'" R U 2 ? B P R U 3 ? B 133.03 119.70 13.33 1.20 Y 2 1 "C1'" R U 5 ? ? "O4'" R U 5 ? ? "C4'" R U 5 ? ? 105.10 109.70 -4.60 0.70 N 3 1 "C1'" S U 1 ? ? "O4'" S U 1 ? ? "C4'" S U 1 ? ? 104.28 109.70 -5.42 0.70 N 4 1 "O4'" S U 1 ? ? "C1'" S U 1 ? ? N1 S U 1 ? ? 114.21 108.50 5.71 0.70 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 67 ? A ALA 67 2 1 Y 1 R U 0 ? C U 1 3 1 Y 1 S U 2 ? D U 2 4 1 Y 1 S U 3 ? D U 3 5 1 Y 1 S U 4 ? D U 4 6 1 Y 1 S U 5 ? D U 5 7 1 Y 1 S U 6 ? D U 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 MG MG MG N N 236 PHE N N N N 237 PHE CA C N S 238 PHE C C N N 239 PHE O O N N 240 PHE CB C N N 241 PHE CG C Y N 242 PHE CD1 C Y N 243 PHE CD2 C Y N 244 PHE CE1 C Y N 245 PHE CE2 C Y N 246 PHE CZ C Y N 247 PHE OXT O N N 248 PHE H H N N 249 PHE H2 H N N 250 PHE HA H N N 251 PHE HB2 H N N 252 PHE HB3 H N N 253 PHE HD1 H N N 254 PHE HD2 H N N 255 PHE HE1 H N N 256 PHE HE2 H N N 257 PHE HZ H N N 258 PHE HXT H N N 259 PRO N N N N 260 PRO CA C N S 261 PRO C C N N 262 PRO O O N N 263 PRO CB C N N 264 PRO CG C N N 265 PRO CD C N N 266 PRO OXT O N N 267 PRO H H N N 268 PRO HA H N N 269 PRO HB2 H N N 270 PRO HB3 H N N 271 PRO HG2 H N N 272 PRO HG3 H N N 273 PRO HD2 H N N 274 PRO HD3 H N N 275 PRO HXT H N N 276 SER N N N N 277 SER CA C N S 278 SER C C N N 279 SER O O N N 280 SER CB C N N 281 SER OG O N N 282 SER OXT O N N 283 SER H H N N 284 SER H2 H N N 285 SER HA H N N 286 SER HB2 H N N 287 SER HB3 H N N 288 SER HG H N N 289 SER HXT H N N 290 THR N N N N 291 THR CA C N S 292 THR C C N N 293 THR O O N N 294 THR CB C N R 295 THR OG1 O N N 296 THR CG2 C N N 297 THR OXT O N N 298 THR H H N N 299 THR H2 H N N 300 THR HA H N N 301 THR HB H N N 302 THR HG1 H N N 303 THR HG21 H N N 304 THR HG22 H N N 305 THR HG23 H N N 306 THR HXT H N N 307 TRP N N N N 308 TRP CA C N S 309 TRP C C N N 310 TRP O O N N 311 TRP CB C N N 312 TRP CG C Y N 313 TRP CD1 C Y N 314 TRP CD2 C Y N 315 TRP NE1 N Y N 316 TRP CE2 C Y N 317 TRP CE3 C Y N 318 TRP CZ2 C Y N 319 TRP CZ3 C Y N 320 TRP CH2 C Y N 321 TRP OXT O N N 322 TRP H H N N 323 TRP H2 H N N 324 TRP HA H N N 325 TRP HB2 H N N 326 TRP HB3 H N N 327 TRP HD1 H N N 328 TRP HE1 H N N 329 TRP HE3 H N N 330 TRP HZ2 H N N 331 TRP HZ3 H N N 332 TRP HH2 H N N 333 TRP HXT H N N 334 U OP3 O N N 335 U P P N N 336 U OP1 O N N 337 U OP2 O N N 338 U "O5'" O N N 339 U "C5'" C N N 340 U "C4'" C N R 341 U "O4'" O N N 342 U "C3'" C N S 343 U "O3'" O N N 344 U "C2'" C N R 345 U "O2'" O N N 346 U "C1'" C N R 347 U N1 N N N 348 U C2 C N N 349 U O2 O N N 350 U N3 N N N 351 U C4 C N N 352 U O4 O N N 353 U C5 C N N 354 U C6 C N N 355 U HOP3 H N N 356 U HOP2 H N N 357 U "H5'" H N N 358 U "H5''" H N N 359 U "H4'" H N N 360 U "H3'" H N N 361 U "HO3'" H N N 362 U "H2'" H N N 363 U "HO2'" H N N 364 U "H1'" H N N 365 U H3 H N N 366 U H5 H N N 367 U H6 H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 U OP3 P sing N N 321 U OP3 HOP3 sing N N 322 U P OP1 doub N N 323 U P OP2 sing N N 324 U P "O5'" sing N N 325 U OP2 HOP2 sing N N 326 U "O5'" "C5'" sing N N 327 U "C5'" "C4'" sing N N 328 U "C5'" "H5'" sing N N 329 U "C5'" "H5''" sing N N 330 U "C4'" "O4'" sing N N 331 U "C4'" "C3'" sing N N 332 U "C4'" "H4'" sing N N 333 U "O4'" "C1'" sing N N 334 U "C3'" "O3'" sing N N 335 U "C3'" "C2'" sing N N 336 U "C3'" "H3'" sing N N 337 U "O3'" "HO3'" sing N N 338 U "C2'" "O2'" sing N N 339 U "C2'" "C1'" sing N N 340 U "C2'" "H2'" sing N N 341 U "O2'" "HO2'" sing N N 342 U "C1'" N1 sing N N 343 U "C1'" "H1'" sing N N 344 U N1 C2 sing N N 345 U N1 C6 sing N N 346 U C2 O2 doub N N 347 U C2 N3 sing N N 348 U N3 C4 sing N N 349 U N3 H3 sing N N 350 U C4 O4 doub N N 351 U C4 C5 sing N N 352 U C5 C6 doub N N 353 U C5 H5 sing N N 354 U C6 H6 sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1CSP _pdbx_initial_refinement_model.details 'PDB ENTRY 1CSP' #