HEADER OXIDOREDUCTASE 28-OCT-10 3PF7 TITLE CRYSTAL STRUCTURE OF BOXB WITH MALONATE BOUND TO THE DIIRON CENTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: BENZOYL-COA OXYGENASE COMPONENT B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BENZOYL-COA 2,3-DIOXYGENASE SUBUNIT B, BENZOYL-COA COMPND 5 DIOXYGENASE OXYGENASE COMPONENT; COMPND 6 EC: 1.14.12.21; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOARCUS EVANSII; SOURCE 3 ORGANISM_TAXID: 59406; SOURCE 4 GENE: BOXB; SOURCE 5 EXPRESSION_SYSTEM: AZOARCUS EVANSII; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 59406 KEYWDS DIIRON CENTER, EPOXIDASE, BENZOYL COENZYME A, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.WEINERT,L.J.RATHER,G.FUCHS,U.ERMLER REVDAT 5 21-FEB-24 3PF7 1 REMARK LINK REVDAT 4 08-NOV-17 3PF7 1 REMARK REVDAT 3 29-APR-15 3PF7 1 HETSYN REVDAT 2 14-SEP-11 3PF7 1 JRNL VERSN REVDAT 1 01-JUN-11 3PF7 0 JRNL AUTH L.J.RATHER,T.WEINERT,U.DEMMER,E.BILL,W.ISMAIL,G.FUCHS, JRNL AUTH 2 U.ERMLER JRNL TITL STRUCTURE AND MECHANISM OF THE DIIRON BENZOYL-COENZYME A JRNL TITL 2 EPOXIDASE BOXB. JRNL REF J.BIOL.CHEM. V. 286 29241 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21632537 JRNL DOI 10.1074/JBC.M111.236893 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 121927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8784 - 5.9107 0.97 4178 220 0.1862 0.1891 REMARK 3 2 5.9107 - 4.6929 1.00 4184 220 0.1586 0.1772 REMARK 3 3 4.6929 - 4.1001 1.00 4154 219 0.1237 0.1393 REMARK 3 4 4.1001 - 3.7254 0.97 4007 211 0.1438 0.1792 REMARK 3 5 3.7254 - 3.4585 0.97 3995 210 0.1554 0.1820 REMARK 3 6 3.4585 - 3.2546 0.98 4046 213 0.1636 0.2192 REMARK 3 7 3.2546 - 3.0916 1.00 4083 215 0.1517 0.1850 REMARK 3 8 3.0916 - 2.9571 1.00 4092 216 0.1471 0.1945 REMARK 3 9 2.9571 - 2.8433 1.00 4124 217 0.1456 0.1660 REMARK 3 10 2.8433 - 2.7452 1.00 4060 214 0.1482 0.1922 REMARK 3 11 2.7452 - 2.6593 0.98 4013 211 0.1697 0.2306 REMARK 3 12 2.6593 - 2.5833 0.99 4050 213 0.1675 0.2203 REMARK 3 13 2.5833 - 2.5153 1.00 4049 213 0.1562 0.1947 REMARK 3 14 2.5153 - 2.4540 1.00 4068 215 0.1532 0.1844 REMARK 3 15 2.4540 - 2.3982 1.00 4052 213 0.1536 0.2279 REMARK 3 16 2.3982 - 2.3471 1.00 4102 216 0.1573 0.1948 REMARK 3 17 2.3471 - 2.3002 1.00 4050 213 0.1614 0.2016 REMARK 3 18 2.3002 - 2.2568 0.93 3764 198 0.2545 0.3700 REMARK 3 19 2.2568 - 2.2165 0.85 3449 179 0.3832 0.4720 REMARK 3 20 2.2165 - 2.1789 1.00 4028 212 0.1962 0.2257 REMARK 3 21 2.1789 - 2.1438 1.00 4086 215 0.1829 0.2128 REMARK 3 22 2.1438 - 2.1108 1.00 4024 212 0.1789 0.2117 REMARK 3 23 2.1108 - 2.0797 0.97 3930 207 0.2622 0.2918 REMARK 3 24 2.0797 - 2.0504 0.89 3608 191 0.3601 0.4262 REMARK 3 25 2.0504 - 2.0227 0.99 4029 212 0.2700 0.2909 REMARK 3 26 2.0227 - 1.9965 1.00 4040 213 0.2395 0.2409 REMARK 3 27 1.9965 - 1.9715 0.98 3954 208 0.2384 0.2960 REMARK 3 28 1.9715 - 1.9478 0.91 3676 191 0.3352 0.3853 REMARK 3 29 1.9478 - 1.9251 0.42 1687 90 0.4310 0.4497 REMARK 3 30 1.9251 - 1.9035 0.55 2251 117 0.5781 0.5781 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.65 REMARK 3 K_SOL : 0.43 REMARK 3 B_SOL : 45.64 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.55330 REMARK 3 B22 (A**2) : -7.83790 REMARK 3 B33 (A**2) : 0.28450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 8124 REMARK 3 ANGLE : 1.133 11062 REMARK 3 CHIRALITY : 0.066 1126 REMARK 3 PLANARITY : 0.005 1461 REMARK 3 DIHEDRAL : 13.303 3010 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -23.5266 23.8971 -4.5491 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.0972 REMARK 3 T33: 0.1088 T12: -0.0149 REMARK 3 T13: -0.0103 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.0909 L22: -0.0163 REMARK 3 L33: 0.1251 L12: 0.0806 REMARK 3 L13: 0.1236 L23: 0.1920 REMARK 3 S TENSOR REMARK 3 S11: 0.0265 S12: 0.0272 S13: -0.0021 REMARK 3 S21: 0.0021 S22: 0.0026 S23: 0.0026 REMARK 3 S31: -0.0280 S32: 0.0175 S33: -0.0182 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PF7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124905 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.71200 REMARK 200 R SYM FOR SHELL (I) : 0.81300 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM MALONATE 0.94 % MG8 REMARK 280 (OCTANOYL-N-METYLGLUCAMIDE) 100 MM KCL 10 MM PIPES 5 MM BENZOYL- REMARK 280 COA, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.59500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.59500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.39500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 106.74500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.39500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 106.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.59500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.39500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 106.74500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.59500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.39500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 106.74500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 555 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 842 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 885 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 895 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 478 REMARK 465 PHE A 479 REMARK 465 GLU A 480 REMARK 465 LYS A 481 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 ASN B 3 REMARK 465 TYR B 4 REMARK 465 SER B 475 REMARK 465 HIS B 476 REMARK 465 PRO B 477 REMARK 465 GLN B 478 REMARK 465 PHE B 479 REMARK 465 GLU B 480 REMARK 465 LYS B 481 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 22 CZ NH1 NH2 REMARK 470 TRP B 474 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 474 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 4 152.29 -49.85 REMARK 500 SER A 5 -74.04 -148.66 REMARK 500 ASN A 42 17.98 54.96 REMARK 500 ALA A 62 53.60 -105.46 REMARK 500 LYS A 329 -36.94 -134.11 REMARK 500 ASP B 57 130.86 -35.94 REMARK 500 PRO B 58 6.30 -56.37 REMARK 500 ALA B 62 58.57 -93.14 REMARK 500 LYS B 329 -41.72 -137.73 REMARK 500 ALA B 450 152.57 -49.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A1001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 120 OE1 REMARK 620 2 GLU A 150 OE2 89.1 REMARK 620 3 HIS A 153 ND1 98.1 93.5 REMARK 620 4 HOH A 975 O 86.6 175.1 89.6 REMARK 620 5 OH A1003 O 167.1 92.4 94.6 91.2 REMARK 620 6 MLA A1004 O1A 77.6 90.9 173.8 85.7 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A1002 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 150 OE1 REMARK 620 2 ASP A 211 OD2 89.0 REMARK 620 3 GLU A 240 OE1 171.0 98.5 REMARK 620 4 HIS A 243 ND1 87.4 87.9 87.9 REMARK 620 5 OH A1003 O 95.3 173.9 77.6 96.5 REMARK 620 6 MLA A1004 O1B 95.5 86.6 89.8 173.7 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B1001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 120 OE1 REMARK 620 2 GLU B 150 OE2 85.1 REMARK 620 3 HIS B 153 ND1 98.1 91.7 REMARK 620 4 HOH B 882 O 88.5 171.7 94.6 REMARK 620 5 OH B1003 O 171.9 90.6 88.9 95.0 REMARK 620 6 MLA B1004 O3A 83.7 88.0 178.2 85.9 89.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B1002 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 150 OE1 REMARK 620 2 ASP B 211 OD2 93.0 REMARK 620 3 GLU B 240 OE1 163.3 91.7 REMARK 620 4 HIS B 243 ND1 81.8 85.2 82.6 REMARK 620 5 OH B1003 O 94.4 172.3 81.9 98.2 REMARK 620 6 MLA B1004 O3B 97.3 83.8 99.2 168.9 92.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA B 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PER RELATED DB: PDB REMARK 900 RELATED ID: 3PM5 RELATED DB: PDB REMARK 900 RELATED ID: 3Q1G RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE C-TERMINAL TAGGED BOXB WAS INTEGRATED INTO THE GENOME OF REMARK 999 AZOARCUS EVANSII AS DESCRIBED ELSEWHERE FOR THE HIS-TAG VERSION REMARK 999 (ZAAR ET AL. 2004) DBREF 3PF7 A 1 473 UNP Q9AIX7 BOXB_AZOEV 1 473 DBREF 3PF7 B 1 473 UNP Q9AIX7 BOXB_AZOEV 1 473 SEQADV 3PF7 TRP A 474 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 SER A 475 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 HIS A 476 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 PRO A 477 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 GLN A 478 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 PHE A 479 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 GLU A 480 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 LYS A 481 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 TRP B 474 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 SER B 475 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 HIS B 476 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 PRO B 477 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 GLN B 478 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 PHE B 479 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 GLU B 480 UNP Q9AIX7 SEE REMARK 999 SEQADV 3PF7 LYS B 481 UNP Q9AIX7 SEE REMARK 999 SEQRES 1 A 481 MET ILE ASN TYR SER GLU ARG ILE PRO ASN ASN VAL ASN SEQRES 2 A 481 LEU ASN GLU ASN LYS THR LEU GLN ARG ALA LEU GLU GLN SEQRES 3 A 481 TRP GLN PRO SER PHE LEU ASN TRP TRP ASP ASP MET GLY SEQRES 4 A 481 PRO GLU ASN SER SER ASN TYR ASP VAL TYR LEU ARG THR SEQRES 5 A 481 ALA VAL SER VAL ASP PRO LYS GLY TRP ALA ASP PHE GLY SEQRES 6 A 481 TYR VAL LYS MET HIS ASP TYR ARG TRP GLY ILE PHE LEU SEQRES 7 A 481 ALA PRO GLN GLU GLY GLU LYS LYS ILE THR PHE GLY GLU SEQRES 8 A 481 HIS LYS GLY GLN ASP VAL TRP GLN GLU VAL PRO GLY GLU SEQRES 9 A 481 TYR ARG SER THR LEU ARG ARG ILE ILE VAL THR GLN GLY SEQRES 10 A 481 ASP THR GLU PRO ALA SER VAL GLU GLN GLN ARG HIS LEU SEQRES 11 A 481 GLY LEU THR ALA PRO SER LEU TYR ASP LEU ARG ASN LEU SEQRES 12 A 481 PHE GLN VAL ASN VAL GLU GLU GLY ARG HIS LEU TRP ALA SEQRES 13 A 481 MET VAL TYR LEU LEU HIS ALA HIS PHE GLY ARG ASP GLY SEQRES 14 A 481 ARG GLU GLU GLY GLU ALA LEU LEU GLU ARG ARG SER GLY SEQRES 15 A 481 ASP GLU ASP ASN PRO ARG ILE LEU THR ALA PHE ASN GLU SEQRES 16 A 481 LYS THR PRO ASP TRP LEU SER PHE PHE MET PHE THR PHE SEQRES 17 A 481 ILE THR ASP ARG ASP GLY LYS PHE GLN LEU ALA SER LEU SEQRES 18 A 481 ALA GLU SER ALA PHE ASP PRO LEU ALA ARG THR CYS LYS SEQRES 19 A 481 PHE MET LEU THR GLU GLU ALA HIS HIS LEU PHE VAL GLY SEQRES 20 A 481 GLU SER GLY ILE ALA ARG VAL ILE GLN ARG THR CYS GLU SEQRES 21 A 481 VAL MET LYS GLU LEU GLY THR ASP ASP PRO ALA LYS LEU SEQRES 22 A 481 ARG ALA ALA GLY VAL ILE ASP LEU PRO THR LEU GLN LYS SEQRES 23 A 481 TYR LEU ASN PHE HIS TYR SER VAL THR SER ASP LEU TYR SEQRES 24 A 481 GLY ALA GLU ILE SER SER ASN ALA ALA THR TYR TYR THR SEQRES 25 A 481 ASN GLY LEU LYS GLY ARG PHE GLU GLU GLU LYS ILE GLY SEQRES 26 A 481 ASP ASP HIS LYS LEU GLN ASN SER GLU TYR GLU VAL MET SEQRES 27 A 481 ASP VAL ALA GLY ASP LYS ILE LEU THR ARG HIS VAL PRO SEQRES 28 A 481 ALA LEU SER ALA LEU ASN GLU ARG LEU ARG ASP ASP TRP SEQRES 29 A 481 ILE THR ASP VAL GLN ALA GLY VAL ASP ARG TRP ASN ARG SEQRES 30 A 481 ILE PRO ALA LYS PHE GLY PHE ASP PHE ARG PHE THR LEU SEQRES 31 A 481 PRO HIS LYS GLY PHE HIS ARG LYS ILE GLY MET PHE ALA SEQRES 32 A 481 ASP VAL HIS VAL SER PRO ASP GLY ARG LEU ILE SER GLU SEQRES 33 A 481 ALA GLU TRP THR HIS GLN HIS LYS ASN TRP LEU PRO THR SEQRES 34 A 481 GLU SER ASP ARG LEU TYR VAL HIS SER LEU MET GLY ARG SEQRES 35 A 481 CYS LEU GLU PRO GLY LYS PHE ALA ASN TRP ILE ALA ALA SEQRES 36 A 481 PRO ALA ARG GLY ILE ASN ASN GLN PRO VAL ASN PHE GLU SEQRES 37 A 481 TYR VAL ARG PHE ASN TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 B 481 MET ILE ASN TYR SER GLU ARG ILE PRO ASN ASN VAL ASN SEQRES 2 B 481 LEU ASN GLU ASN LYS THR LEU GLN ARG ALA LEU GLU GLN SEQRES 3 B 481 TRP GLN PRO SER PHE LEU ASN TRP TRP ASP ASP MET GLY SEQRES 4 B 481 PRO GLU ASN SER SER ASN TYR ASP VAL TYR LEU ARG THR SEQRES 5 B 481 ALA VAL SER VAL ASP PRO LYS GLY TRP ALA ASP PHE GLY SEQRES 6 B 481 TYR VAL LYS MET HIS ASP TYR ARG TRP GLY ILE PHE LEU SEQRES 7 B 481 ALA PRO GLN GLU GLY GLU LYS LYS ILE THR PHE GLY GLU SEQRES 8 B 481 HIS LYS GLY GLN ASP VAL TRP GLN GLU VAL PRO GLY GLU SEQRES 9 B 481 TYR ARG SER THR LEU ARG ARG ILE ILE VAL THR GLN GLY SEQRES 10 B 481 ASP THR GLU PRO ALA SER VAL GLU GLN GLN ARG HIS LEU SEQRES 11 B 481 GLY LEU THR ALA PRO SER LEU TYR ASP LEU ARG ASN LEU SEQRES 12 B 481 PHE GLN VAL ASN VAL GLU GLU GLY ARG HIS LEU TRP ALA SEQRES 13 B 481 MET VAL TYR LEU LEU HIS ALA HIS PHE GLY ARG ASP GLY SEQRES 14 B 481 ARG GLU GLU GLY GLU ALA LEU LEU GLU ARG ARG SER GLY SEQRES 15 B 481 ASP GLU ASP ASN PRO ARG ILE LEU THR ALA PHE ASN GLU SEQRES 16 B 481 LYS THR PRO ASP TRP LEU SER PHE PHE MET PHE THR PHE SEQRES 17 B 481 ILE THR ASP ARG ASP GLY LYS PHE GLN LEU ALA SER LEU SEQRES 18 B 481 ALA GLU SER ALA PHE ASP PRO LEU ALA ARG THR CYS LYS SEQRES 19 B 481 PHE MET LEU THR GLU GLU ALA HIS HIS LEU PHE VAL GLY SEQRES 20 B 481 GLU SER GLY ILE ALA ARG VAL ILE GLN ARG THR CYS GLU SEQRES 21 B 481 VAL MET LYS GLU LEU GLY THR ASP ASP PRO ALA LYS LEU SEQRES 22 B 481 ARG ALA ALA GLY VAL ILE ASP LEU PRO THR LEU GLN LYS SEQRES 23 B 481 TYR LEU ASN PHE HIS TYR SER VAL THR SER ASP LEU TYR SEQRES 24 B 481 GLY ALA GLU ILE SER SER ASN ALA ALA THR TYR TYR THR SEQRES 25 B 481 ASN GLY LEU LYS GLY ARG PHE GLU GLU GLU LYS ILE GLY SEQRES 26 B 481 ASP ASP HIS LYS LEU GLN ASN SER GLU TYR GLU VAL MET SEQRES 27 B 481 ASP VAL ALA GLY ASP LYS ILE LEU THR ARG HIS VAL PRO SEQRES 28 B 481 ALA LEU SER ALA LEU ASN GLU ARG LEU ARG ASP ASP TRP SEQRES 29 B 481 ILE THR ASP VAL GLN ALA GLY VAL ASP ARG TRP ASN ARG SEQRES 30 B 481 ILE PRO ALA LYS PHE GLY PHE ASP PHE ARG PHE THR LEU SEQRES 31 B 481 PRO HIS LYS GLY PHE HIS ARG LYS ILE GLY MET PHE ALA SEQRES 32 B 481 ASP VAL HIS VAL SER PRO ASP GLY ARG LEU ILE SER GLU SEQRES 33 B 481 ALA GLU TRP THR HIS GLN HIS LYS ASN TRP LEU PRO THR SEQRES 34 B 481 GLU SER ASP ARG LEU TYR VAL HIS SER LEU MET GLY ARG SEQRES 35 B 481 CYS LEU GLU PRO GLY LYS PHE ALA ASN TRP ILE ALA ALA SEQRES 36 B 481 PRO ALA ARG GLY ILE ASN ASN GLN PRO VAL ASN PHE GLU SEQRES 37 B 481 TYR VAL ARG PHE ASN TRP SER HIS PRO GLN PHE GLU LYS HET FE A1001 1 HET FE A1002 1 HET OH A1003 1 HET MLA A1004 9 HET CL A 482 1 HET FE B1001 1 HET FE B1002 1 HET OH B1003 1 HET MLA B1004 9 HETNAM FE FE (III) ION HETNAM OH HYDROXIDE ION HETNAM MLA MALONIC ACID HETNAM CL CHLORIDE ION HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 3 FE 4(FE 3+) FORMUL 5 OH 2(H O 1-) FORMUL 6 MLA 2(C3 H4 O4) FORMUL 7 CL CL 1- FORMUL 12 HOH *993(H2 O) HELIX 1 1 ASN A 13 GLU A 16 5 4 HELIX 2 2 ASN A 17 GLY A 39 1 23 HELIX 3 3 ASP A 57 ALA A 62 1 6 HELIX 4 4 LYS A 68 TYR A 72 5 5 HELIX 5 5 PRO A 102 GLU A 104 5 3 HELIX 6 6 TYR A 105 ARG A 128 1 24 HELIX 7 7 HIS A 129 ALA A 134 5 6 HELIX 8 8 SER A 136 PHE A 165 1 30 HELIX 9 9 PHE A 165 ARG A 179 1 15 HELIX 10 10 LEU A 190 ASN A 194 5 5 HELIX 11 11 ASP A 199 THR A 210 1 12 HELIX 12 12 THR A 210 ALA A 222 1 13 HELIX 13 13 PHE A 226 GLY A 266 1 41 HELIX 14 14 ASP A 269 ALA A 276 1 8 HELIX 15 15 ASP A 280 ASP A 297 1 18 HELIX 16 16 LEU A 298 GLY A 300 5 3 HELIX 17 17 SER A 304 ASN A 313 1 10 HELIX 18 18 GLU A 320 ILE A 324 5 5 HELIX 19 19 ALA A 355 GLY A 383 1 29 HELIX 20 20 SER A 415 HIS A 423 1 9 HELIX 21 21 LYS A 424 TRP A 426 5 3 HELIX 22 22 THR A 429 MET A 440 1 12 HELIX 23 23 ASN B 13 GLU B 16 5 4 HELIX 24 24 ASN B 17 GLY B 39 1 23 HELIX 25 25 LYS B 68 TYR B 72 5 5 HELIX 26 26 PRO B 102 GLU B 104 5 3 HELIX 27 27 TYR B 105 ARG B 128 1 24 HELIX 28 28 HIS B 129 ALA B 134 5 6 HELIX 29 29 SER B 136 PHE B 165 1 30 HELIX 30 30 PHE B 165 ARG B 179 1 15 HELIX 31 31 LEU B 190 ASN B 194 5 5 HELIX 32 32 ASP B 199 THR B 210 1 12 HELIX 33 33 THR B 210 ALA B 222 1 13 HELIX 34 34 PHE B 226 GLY B 266 1 41 HELIX 35 35 ASP B 269 ALA B 276 1 8 HELIX 36 36 ASP B 280 ASP B 297 1 18 HELIX 37 37 LEU B 298 GLY B 300 5 3 HELIX 38 38 SER B 304 ASN B 313 1 10 HELIX 39 39 GLU B 320 ILE B 324 5 5 HELIX 40 40 ALA B 355 ASN B 376 1 22 HELIX 41 41 ASN B 376 PHE B 382 1 7 HELIX 42 42 SER B 415 HIS B 423 1 9 HELIX 43 43 LYS B 424 TRP B 426 5 3 HELIX 44 44 THR B 429 MET B 440 1 12 SHEET 1 A 3 ASP A 63 VAL A 67 0 SHEET 2 A 3 ASP A 47 THR A 52 -1 N VAL A 48 O VAL A 67 SHEET 3 A 3 VAL A 470 ARG A 471 -1 O ARG A 471 N ASP A 47 SHEET 1 B 2 GLU A 334 ALA A 341 0 SHEET 2 B 2 LYS A 344 PRO A 351 -1 O ARG A 348 N VAL A 337 SHEET 1 C 2 HIS A 406 VAL A 407 0 SHEET 2 C 2 LEU A 413 ILE A 414 -1 O ILE A 414 N HIS A 406 SHEET 1 D 3 ASP B 63 VAL B 67 0 SHEET 2 D 3 ASP B 47 THR B 52 -1 N VAL B 48 O VAL B 67 SHEET 3 D 3 VAL B 470 ARG B 471 -1 O ARG B 471 N ASP B 47 SHEET 1 E 2 GLU B 334 ALA B 341 0 SHEET 2 E 2 LYS B 344 PRO B 351 -1 O ARG B 348 N VAL B 337 LINK OE1 GLU A 120 FE FE A1001 1555 1555 2.01 LINK OE2 GLU A 150 FE FE A1001 1555 1555 2.05 LINK OE1 GLU A 150 FE FE A1002 1555 1555 2.08 LINK ND1 HIS A 153 FE FE A1001 1555 1555 2.24 LINK OD2 ASP A 211 FE FE A1002 1555 1555 2.07 LINK OE1 GLU A 240 FE FE A1002 1555 1555 2.14 LINK ND1 HIS A 243 FE FE A1002 1555 1555 2.21 LINK O HOH A 975 FE FE A1001 1555 1555 2.16 LINK FE FE A1001 O OH A1003 1555 1555 1.99 LINK FE FE A1001 O1A MLA A1004 1555 1555 2.18 LINK FE FE A1002 O OH A1003 1555 1555 1.96 LINK FE FE A1002 O1B MLA A1004 1555 1555 2.06 LINK OE1 GLU B 120 FE FE B1001 1555 1555 2.04 LINK OE2 GLU B 150 FE FE B1001 1555 1555 2.06 LINK OE1 GLU B 150 FE FE B1002 1555 1555 2.07 LINK ND1 HIS B 153 FE FE B1001 1555 1555 2.26 LINK OD2 ASP B 211 FE FE B1002 1555 1555 2.05 LINK OE1 GLU B 240 FE FE B1002 1555 1555 2.16 LINK ND1 HIS B 243 FE FE B1002 1555 1555 2.15 LINK O HOH B 882 FE FE B1001 1555 1555 2.21 LINK FE FE B1001 O OH B1003 1555 1555 1.96 LINK FE FE B1001 O3A MLA B1004 1555 1555 2.08 LINK FE FE B1002 O OH B1003 1555 1555 2.08 LINK FE FE B1002 O3B MLA B1004 1555 1555 2.15 SITE 1 AC1 7 GLU A 120 GLU A 150 HIS A 153 HOH A 975 SITE 2 AC1 7 FE A1002 OH A1003 MLA A1004 SITE 1 AC2 7 GLU A 150 ASP A 211 GLU A 240 HIS A 243 SITE 2 AC2 7 FE A1001 OH A1003 MLA A1004 SITE 1 AC3 8 GLU A 150 HIS A 153 GLU A 240 HIS A 243 SITE 2 AC3 8 HOH A 975 FE A1001 FE A1002 MLA A1004 SITE 1 AC4 14 GLN A 116 THR A 119 GLU A 120 GLU A 150 SITE 2 AC4 14 PHE A 193 ASP A 211 ASP A 213 GLY A 214 SITE 3 AC4 14 GLU A 240 HOH A 578 HOH A 975 FE A1001 SITE 4 AC4 14 FE A1002 OH A1003 SITE 1 AC5 3 ARG A 106 SER A 107 ARG A 110 SITE 1 AC6 7 GLU B 120 GLU B 150 HIS B 153 HOH B 882 SITE 2 AC6 7 FE B1002 OH B1003 MLA B1004 SITE 1 AC7 7 GLU B 150 ASP B 211 GLU B 240 HIS B 243 SITE 2 AC7 7 FE B1001 OH B1003 MLA B1004 SITE 1 AC8 8 GLU B 150 HIS B 153 GLU B 240 HIS B 243 SITE 2 AC8 8 HOH B 882 FE B1001 FE B1002 MLA B1004 SITE 1 AC9 13 GLN B 116 THR B 119 GLU B 120 GLU B 150 SITE 2 AC9 13 PHE B 193 ASP B 211 GLY B 214 GLU B 240 SITE 3 AC9 13 HOH B 714 HOH B 882 FE B1001 FE B1002 SITE 4 AC9 13 OH B1003 CRYST1 112.790 213.490 137.190 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008866 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007289 0.00000