HEADER HYDROLASE 29-OCT-10 3PFY TITLE THE CATALYTIC DOMAIN OF HUMAN OTUD5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OTU DOMAIN-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: OTU DOMAIN (UNP RESIDUES 172-339); COMPND 5 SYNONYM: DEUBIQUITINATING ENZYME A, DUBA; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OTUD5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, PEPTIDASE KEYWDS 2 C65 OTUBAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,A.E.ASINAS,L.CROMBET,A.DONG,J.WEIGELT,C.BOUNTRA, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,S.DHE-PAGANON,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 1 15-DEC-10 3PFY 0 JRNL AUTH J.R.WALKER,A.E.ASINAS,L.CROMBET,A.DONG,J.WEIGELT,C.BOUNTRA, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,S.DHE-PAGANON, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL THE CATALYTIC DOMAIN OF HUMAN OTUD5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 983 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1342 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1064 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.233 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1171 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1582 ; 1.519 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 139 ; 5.748 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;36.251 ;24.627 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 192 ;11.154 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;16.019 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 155 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 925 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 679 ; 0.903 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1105 ; 1.688 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 492 ; 3.195 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 476 ; 4.826 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 191 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2480 45.8759 0.8865 REMARK 3 T TENSOR REMARK 3 T11: 0.4136 T22: 0.1025 REMARK 3 T33: 0.4186 T12: 0.0089 REMARK 3 T13: 0.0043 T23: 0.1039 REMARK 3 L TENSOR REMARK 3 L11: 18.9632 L22: 45.2171 REMARK 3 L33: 4.0908 L12: 1.0946 REMARK 3 L13: -5.3363 L23: -11.1142 REMARK 3 S TENSOR REMARK 3 S11: 0.6278 S12: 0.4083 S13: 1.0212 REMARK 3 S21: -0.9876 S22: -0.8920 S23: -1.9121 REMARK 3 S31: 0.0596 S32: 0.1190 S33: 0.2642 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8913 35.7778 5.0118 REMARK 3 T TENSOR REMARK 3 T11: 0.1045 T22: 0.0702 REMARK 3 T33: 0.1212 T12: 0.0283 REMARK 3 T13: -0.0131 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 8.5258 L22: 9.0281 REMARK 3 L33: 2.6903 L12: 4.7811 REMARK 3 L13: -1.3875 L23: -0.2792 REMARK 3 S TENSOR REMARK 3 S11: 0.1100 S12: 0.0129 S13: 0.4566 REMARK 3 S21: -0.1929 S22: -0.0923 S23: 0.3720 REMARK 3 S31: -0.2890 S32: -0.1736 S33: -0.0177 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 208 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9616 28.3600 10.8051 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.1155 REMARK 3 T33: 0.1034 T12: 0.0133 REMARK 3 T13: 0.0005 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 7.7955 L22: 1.1121 REMARK 3 L33: 4.9761 L12: 2.1877 REMARK 3 L13: 5.3358 L23: 1.5415 REMARK 3 S TENSOR REMARK 3 S11: -0.0851 S12: -0.2003 S13: 0.0895 REMARK 3 S21: 0.0266 S22: 0.0137 S23: 0.1757 REMARK 3 S31: 0.0215 S32: -0.3152 S33: 0.0714 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 219 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1127 28.2203 17.6643 REMARK 3 T TENSOR REMARK 3 T11: 0.0388 T22: 0.0545 REMARK 3 T33: 0.0206 T12: 0.0293 REMARK 3 T13: -0.0066 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 4.1316 L22: 3.3947 REMARK 3 L33: 4.5813 L12: -0.2020 REMARK 3 L13: -0.5363 L23: 0.3865 REMARK 3 S TENSOR REMARK 3 S11: -0.0379 S12: -0.1680 S13: 0.2126 REMARK 3 S21: 0.0275 S22: 0.0465 S23: -0.0605 REMARK 3 S31: -0.1079 S32: 0.0743 S33: -0.0086 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 238 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4141 24.5755 20.4552 REMARK 3 T TENSOR REMARK 3 T11: 0.0677 T22: 0.0973 REMARK 3 T33: 0.0256 T12: 0.0180 REMARK 3 T13: -0.0242 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 7.7196 L22: 5.9596 REMARK 3 L33: 9.4960 L12: -4.2031 REMARK 3 L13: -3.4457 L23: 4.2779 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: -0.1145 S13: 0.2546 REMARK 3 S21: 0.1023 S22: 0.2217 S23: -0.3114 REMARK 3 S31: 0.0542 S32: 0.4596 S33: -0.1733 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 249 A 281 REMARK 3 ORIGIN FOR THE GROUP (A): 34.7107 17.0934 8.2406 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.3190 REMARK 3 T33: 0.1671 T12: 0.0661 REMARK 3 T13: -0.0284 T23: -0.0970 REMARK 3 L TENSOR REMARK 3 L11: 1.7958 L22: 3.7046 REMARK 3 L33: 7.3626 L12: -1.7004 REMARK 3 L13: -3.5122 L23: 4.1916 REMARK 3 S TENSOR REMARK 3 S11: -0.1128 S12: -0.4471 S13: 0.2277 REMARK 3 S21: 0.0597 S22: 0.6196 S23: -0.2785 REMARK 3 S31: 0.2261 S32: 1.1155 S33: -0.5068 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 282 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4405 17.6898 10.0062 REMARK 3 T TENSOR REMARK 3 T11: 0.1094 T22: 0.0552 REMARK 3 T33: 0.0441 T12: 0.0478 REMARK 3 T13: 0.0130 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 6.0618 L22: 2.9494 REMARK 3 L33: 5.9309 L12: 2.1872 REMARK 3 L13: 0.7623 L23: 1.3317 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: 0.0514 S13: 0.0596 REMARK 3 S21: 0.1076 S22: 0.0690 S23: 0.0041 REMARK 3 S31: 0.1356 S32: 0.2201 S33: -0.0617 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 297 A 313 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7132 21.1362 2.8621 REMARK 3 T TENSOR REMARK 3 T11: 0.0648 T22: 0.0615 REMARK 3 T33: 0.0450 T12: 0.0005 REMARK 3 T13: 0.0129 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.1736 L22: 5.5172 REMARK 3 L33: 1.7493 L12: -2.0871 REMARK 3 L13: -0.2154 L23: 0.9034 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: 0.1580 S13: -0.0955 REMARK 3 S21: 0.1253 S22: -0.1676 S23: 0.1289 REMARK 3 S31: 0.1203 S32: -0.0930 S33: 0.1324 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 314 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5159 10.2080 10.3202 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.1421 REMARK 3 T33: 0.2883 T12: -0.1171 REMARK 3 T13: 0.0494 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 13.4268 L22: 27.1698 REMARK 3 L33: 11.4792 L12: -14.5247 REMARK 3 L13: -1.7934 L23: -7.3933 REMARK 3 S TENSOR REMARK 3 S11: -0.2558 S12: 0.1452 S13: -0.8247 REMARK 3 S21: 0.0896 S22: 0.0726 S23: 1.1835 REMARK 3 S31: 0.6913 S32: -0.3282 S33: 0.1832 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 319 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1881 28.7169 9.3355 REMARK 3 T TENSOR REMARK 3 T11: 0.0542 T22: 0.0522 REMARK 3 T33: 0.0148 T12: 0.0130 REMARK 3 T13: -0.0020 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 3.6870 L22: 3.6653 REMARK 3 L33: 3.6149 L12: -1.3063 REMARK 3 L13: -0.0511 L23: -0.1817 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: -0.0083 S13: 0.0678 REMARK 3 S21: -0.1281 S22: -0.0552 S23: -0.0052 REMARK 3 S31: -0.0643 S32: 0.0948 S33: 0.0280 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3PFY COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-10. REMARK 100 THE RCSB ID CODE IS RCSB062329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19398 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 18.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 65.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19900 REMARK 200 FOR SHELL : 17.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% PEG 400, 2 M AMMONIUM SULFATE, 0.1 REMARK 280 M SODIUM HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.13150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.30250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.30250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.06575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.30250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.30250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.19725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.30250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.30250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.06575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.30250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.30250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.19725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.13150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 HIS A 161 REMARK 465 SER A 162 REMARK 465 SER A 163 REMARK 465 GLY A 164 REMARK 465 ARG A 165 REMARK 465 GLU A 166 REMARK 465 ASN A 167 REMARK 465 LEU A 168 REMARK 465 TYR A 169 REMARK 465 PHE A 170 REMARK 465 GLN A 171 REMARK 465 GLY A 172 REMARK 465 ALA A 173 REMARK 465 GLY A 174 REMARK 465 TYR A 175 REMARK 465 ASN A 176 REMARK 465 SER A 177 REMARK 465 GLU A 178 REMARK 465 ASP A 179 REMARK 465 GLU A 180 REMARK 465 TYR A 181 REMARK 465 GLU A 182 REMARK 465 ALA A 183 REMARK 465 ALA A 184 REMARK 465 ALA A 185 REMARK 465 ALA A 186 REMARK 465 ARG A 187 REMARK 465 ILE A 188 REMARK 465 GLU A 189 REMARK 465 ALA A 190 REMARK 465 THR A 263 REMARK 465 GLU A 264 REMARK 465 ASP A 265 REMARK 465 PHE A 266 REMARK 465 THR A 267 REMARK 465 THR A 268 REMARK 465 TYR A 269 REMARK 465 ILE A 270 REMARK 465 ASN A 271 REMARK 465 ARG A 272 REMARK 465 LYS A 273 REMARK 465 ARG A 274 REMARK 465 LYS A 275 REMARK 465 ASN A 276 REMARK 465 ASN A 277 REMARK 465 CYS A 278 REMARK 465 HIS A 279 REMARK 465 ASN A 337 REMARK 465 LYS A 338 REMARK 465 ALA A 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 191 CG SE CE REMARK 470 ASP A 192 OD1 OD2 REMARK 470 LYS A 205 CE NZ REMARK 470 LYS A 253 CE NZ REMARK 470 ILE A 328 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 326 150.29 -47.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IN THIS ENTRY CORRESPONDS TO ISOFORM 2 OF UNP Q96G74 DBREF 3PFY A 172 339 UNP Q96G74 OTUD5_HUMAN 172 339 SEQADV 3PFY MSE A 155 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY HIS A 156 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY HIS A 157 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY HIS A 158 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY HIS A 159 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY HIS A 160 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY HIS A 161 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY SER A 162 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY SER A 163 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY GLY A 164 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY ARG A 165 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY GLU A 166 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY ASN A 167 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY LEU A 168 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY TYR A 169 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY PHE A 170 UNP Q96G74 EXPRESSION TAG SEQADV 3PFY GLN A 171 UNP Q96G74 EXPRESSION TAG SEQRES 1 A 185 MSE HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 185 LEU TYR PHE GLN GLY ALA GLY TYR ASN SER GLU ASP GLU SEQRES 3 A 185 TYR GLU ALA ALA ALA ALA ARG ILE GLU ALA MSE ASP PRO SEQRES 4 A 185 ALA THR VAL GLU GLN GLN GLU HIS TRP PHE GLU LYS ALA SEQRES 5 A 185 LEU ARG ASP LYS LYS GLY PHE ILE ILE LYS GLN MSE LYS SEQRES 6 A 185 GLU ASP GLY ALA CYS LEU PHE ARG ALA VAL ALA ASP GLN SEQRES 7 A 185 VAL TYR GLY ASP GLN ASP MSE HIS GLU VAL VAL ARG LYS SEQRES 8 A 185 HIS CYS MSE ASP TYR LEU MSE LYS ASN ALA ASP TYR PHE SEQRES 9 A 185 SER ASN TYR VAL THR GLU ASP PHE THR THR TYR ILE ASN SEQRES 10 A 185 ARG LYS ARG LYS ASN ASN CYS HIS GLY ASN HIS ILE GLU SEQRES 11 A 185 MSE GLN ALA MSE ALA GLU MSE TYR ASN ARG PRO VAL GLU SEQRES 12 A 185 VAL TYR GLN TYR SER THR GLU PRO ILE ASN THR PHE HIS SEQRES 13 A 185 GLY ILE HIS GLN ASN GLU ASP GLU PRO ILE ARG VAL SER SEQRES 14 A 185 TYR HIS ARG ASN ILE HIS TYR ASN SER VAL VAL ASN PRO SEQRES 15 A 185 ASN LYS ALA MODRES 3PFY MSE A 191 MET SELENOMETHIONINE MODRES 3PFY MSE A 218 MET SELENOMETHIONINE MODRES 3PFY MSE A 239 MET SELENOMETHIONINE MODRES 3PFY MSE A 248 MET SELENOMETHIONINE MODRES 3PFY MSE A 252 MET SELENOMETHIONINE MODRES 3PFY MSE A 285 MET SELENOMETHIONINE MODRES 3PFY MSE A 288 MET SELENOMETHIONINE MODRES 3PFY MSE A 291 MET SELENOMETHIONINE HET MSE A 191 5 HET MSE A 218 8 HET MSE A 239 16 HET MSE A 248 8 HET MSE A 252 16 HET MSE A 285 8 HET MSE A 288 8 HET MSE A 291 8 HET PEG A 400 7 HET PEG A 401 7 HET PG4 A 402 13 HET SO4 A 403 5 HET UNX A 508 1 HETNAM MSE SELENOMETHIONINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 PEG 2(C4 H10 O3) FORMUL 4 PG4 C8 H18 O5 FORMUL 5 SO4 O4 S 2- FORMUL 6 UNX X FORMUL 7 HOH *104(H2 O) HELIX 1 1 ASP A 192 GLY A 212 1 21 HELIX 2 2 ALA A 223 GLY A 235 1 13 HELIX 3 3 ASP A 236 ASP A 238 5 3 HELIX 4 4 MSE A 239 ASN A 254 1 16 HELIX 5 5 ASN A 254 SER A 259 1 6 HELIX 6 6 ASN A 281 ASN A 293 1 13 SHEET 1 A 5 ILE A 214 LYS A 216 0 SHEET 2 A 5 HIS A 329 VAL A 334 -1 O SER A 332 N LYS A 216 SHEET 3 A 5 ILE A 320 HIS A 325 -1 N HIS A 325 O HIS A 329 SHEET 4 A 5 VAL A 296 TYR A 299 1 N GLU A 297 O ILE A 320 SHEET 5 A 5 ASN A 307 PHE A 309 -1 O PHE A 309 N VAL A 296 LINK C MSE A 191 N ASP A 192 1555 1555 1.33 LINK C GLN A 217 N MSE A 218 1555 1555 1.33 LINK C MSE A 218 N LYS A 219 1555 1555 1.33 LINK C ASP A 238 N AMSE A 239 1555 1555 1.34 LINK C ASP A 238 N BMSE A 239 1555 1555 1.33 LINK C AMSE A 239 N HIS A 240 1555 1555 1.34 LINK C BMSE A 239 N HIS A 240 1555 1555 1.33 LINK C CYS A 247 N MSE A 248 1555 1555 1.34 LINK C MSE A 248 N ASP A 249 1555 1555 1.34 LINK C LEU A 251 N AMSE A 252 1555 1555 1.33 LINK C LEU A 251 N BMSE A 252 1555 1555 1.34 LINK C AMSE A 252 N LYS A 253 1555 1555 1.33 LINK C BMSE A 252 N LYS A 253 1555 1555 1.33 LINK C GLU A 284 N MSE A 285 1555 1555 1.33 LINK C MSE A 285 N GLN A 286 1555 1555 1.35 LINK C ALA A 287 N MSE A 288 1555 1555 1.33 LINK C MSE A 288 N ALA A 289 1555 1555 1.33 LINK C GLU A 290 N MSE A 291 1555 1555 1.33 LINK C MSE A 291 N TYR A 292 1555 1555 1.32 SITE 1 AC1 6 ASP A 238 GLU A 241 VAL A 242 HOH A 404 SITE 2 AC1 6 HOH A 417 HOH A 460 SITE 1 AC2 7 LYS A 216 ASP A 231 GLN A 232 GLY A 235 SITE 2 AC2 7 VAL A 334 HOH A 439 HOH A 447 SITE 1 AC3 4 GLU A 197 GLN A 199 TRP A 202 TYR A 257 SITE 1 AC4 4 LYS A 219 ARG A 227 HOH A 449 HOH A 484 CRYST1 80.605 80.605 52.263 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012406 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012406 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019134 0.00000 HETATM 1 N MSE A 191 14.797 45.154 -2.369 1.00 55.87 N ANISOU 1 N MSE A 191 8305 3436 9486 1353 3389 2577 N HETATM 2 CA MSE A 191 13.393 45.243 -1.846 1.00 47.12 C ANISOU 2 CA MSE A 191 7509 3068 7324 1010 2149 1971 C HETATM 3 C MSE A 191 13.275 46.288 -0.737 1.00 42.80 C ANISOU 3 C MSE A 191 6195 2624 7443 634 1385 1920 C HETATM 4 O MSE A 191 14.101 46.328 0.178 1.00 44.29 O ANISOU 4 O MSE A 191 5662 2550 8616 352 1036 2039 O HETATM 5 CB MSE A 191 12.908 43.874 -1.351 1.00 44.05 C ANISOU 5 CB MSE A 191 7297 2920 6518 818 1652 1505 C