HEADER DNA BINDING PROTEIN 01-NOV-10 3PGG TITLE CRYSTAL STRUCTURE OF CRYPTOSPORIDIUM PARVUM U6 SNRNA-ASSOCIATED SM- TITLE 2 LIKE PROTEIN LSM5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5. SM DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOSPORIDIUM PARVUM; SOURCE 3 ORGANISM_TAXID: 5807; SOURCE 4 GENE: CGD7_4580; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 CODON PLUS RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P28-LIC-THROMBIN DERIVED FROM PET28 KEYWDS U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN, LSM5, DNA BINDING PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,M.GAO,Y.ZHAO,J.LEW,G.A.WASNEY,I.KOZIERADZKI,M.VEDADI, AUTHOR 2 A.EDWARDS,C.ARROWSMITH,J.WEIGELT,M.SUNDSTROM,A.BOCHKAREV,R.HUI, AUTHOR 3 J.ARTZ,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 21-FEB-24 3PGG 1 REMARK REVDAT 2 08-NOV-17 3PGG 1 REMARK REVDAT 1 02-FEB-11 3PGG 0 SPRSDE 02-FEB-11 3PGG 2FWK JRNL AUTH M.VEDADI,J.LEW,J.ARTZ,M.AMANI,Y.ZHAO,A.DONG,G.A.WASNEY, JRNL AUTH 2 M.GAO,T.HILLS,S.BROKX,W.QIU,S.SHARMA,A.DIASSITI,Z.ALAM, JRNL AUTH 3 M.MELONE,A.MULICHAK,A.WERNIMONT,J.BRAY,P.LOPPNAU, JRNL AUTH 4 O.PLOTNIKOVA,K.NEWBERRY,E.SUNDARARAJAN,S.HOUSTON,J.WALKER, JRNL AUTH 5 W.TEMPEL,A.BOCHKAREV,I.KOZIERADZKI,A.EDWARDS,C.ARROWSMITH, JRNL AUTH 6 D.ROOS,K.KAIN,R.HUI JRNL TITL GENOME-SCALE PROTEIN EXPRESSION AND STRUCTURAL BIOLOGY OF JRNL TITL 2 PLASMODIUM FALCIPARUM AND RELATED APICOMPLEXAN ORGANISMS. JRNL REF MOL.BIOCHEM.PARASITOL. V. 151 100 2007 JRNL REFN ISSN 0166-6851 JRNL PMID 17125854 JRNL DOI 10.1016/J.MOLBIOPARA.2006.10.011 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 809 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1083 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1154 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.84000 REMARK 3 B22 (A**2) : -5.84000 REMARK 3 B33 (A**2) : 11.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.261 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1166 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1578 ; 1.298 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 154 ; 9.373 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;34.889 ;25.652 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 186 ;16.031 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;16.450 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 190 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 862 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 772 ; 2.010 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1221 ; 3.186 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 394 ; 4.606 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 357 ; 6.773 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.601 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H+K,-K,-L REMARK 3 TWIN FRACTION : 0.399 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VERIMAX HR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16363 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 54.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.79500 REMARK 200 R SYM FOR SHELL (I) : 0.79500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V. 1.3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.05 M NA CITRATE, 100 MM BISTRIS REMARK 280 PH6.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HEXAMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 101.16300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 50.58150 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 87.60973 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 TYR A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 TYR A 6 REMARK 465 MET A 7 REMARK 465 SER A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 PRO A 11 REMARK 465 ALA A 12 REMARK 465 ASN A 13 REMARK 465 LYS A 14 REMARK 465 SER A 15 REMARK 465 GLN A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 ASN A 20 REMARK 465 GLN A 21 REMARK 465 LYS A 22 REMARK 465 GLY A 23 REMARK 465 GLY A 24 REMARK 465 GLU A 78 REMARK 465 GLU A 79 REMARK 465 ASP A 80 REMARK 465 ILE A 81 REMARK 465 SER A 82 REMARK 465 GLY A 83 REMARK 465 GLY A 84 REMARK 465 ASN A 85 REMARK 465 LYS A 86 REMARK 465 LYS A 87 REMARK 465 LEU A 88 REMARK 465 ASP A 114 REMARK 465 PRO A 115 REMARK 465 ASP A 116 REMARK 465 SER A 117 REMARK 465 PHE A 118 REMARK 465 ASN A 119 REMARK 465 PHE A 120 REMARK 465 SER A 121 REMARK 465 SER B 1 REMARK 465 TYR B 2 REMARK 465 LYS B 3 REMARK 465 VAL B 4 REMARK 465 ASN B 5 REMARK 465 TYR B 6 REMARK 465 MET B 7 REMARK 465 SER B 8 REMARK 465 GLU B 9 REMARK 465 THR B 10 REMARK 465 PRO B 11 REMARK 465 ALA B 12 REMARK 465 ASN B 13 REMARK 465 LYS B 14 REMARK 465 SER B 15 REMARK 465 GLN B 16 REMARK 465 GLY B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 ASN B 20 REMARK 465 GLN B 21 REMARK 465 LYS B 22 REMARK 465 ASP B 77 REMARK 465 GLU B 78 REMARK 465 GLU B 79 REMARK 465 ASP B 80 REMARK 465 ILE B 81 REMARK 465 SER B 82 REMARK 465 GLY B 83 REMARK 465 GLY B 84 REMARK 465 ASN B 85 REMARK 465 LYS B 86 REMARK 465 LYS B 87 REMARK 465 LEU B 88 REMARK 465 PRO B 115 REMARK 465 ASP B 116 REMARK 465 SER B 117 REMARK 465 PHE B 118 REMARK 465 ASN B 119 REMARK 465 PHE B 120 REMARK 465 SER B 121 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 25 CG OD1 ND2 REMARK 470 ILE A 26 CD1 REMARK 470 ILE A 27 CG1 CG2 CD1 REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 ILE A 37 CD1 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 ASP A 77 CG OD1 OD2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 91 CG1 CG2 REMARK 470 LYS B 35 CD CE NZ REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 ARG B 56 CZ NH1 NH2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 95 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 97 CG CD OE1 OE2 REMARK 470 ASP B 114 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 97 -125.44 -102.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 67 -11.21 REMARK 500 ILE A 99 -10.17 REMARK 500 REMARK 500 REMARK: NULL DBREF 3PGG A 1 121 UNP Q5CXX3 Q5CXX3_CRYPV 1 121 DBREF 3PGG B 1 121 UNP Q5CXX3 Q5CXX3_CRYPV 1 121 SEQRES 1 A 121 SER TYR LYS VAL ASN TYR MET SER GLU THR PRO ALA ASN SEQRES 2 A 121 LYS SER GLN GLY GLY SER ASN GLN LYS GLY GLY ASN ILE SEQRES 3 A 121 ILE LEU PRO LEU ALA LEU ILE ASP LYS CYS ILE GLY ASN SEQRES 4 A 121 ARG ILE TYR VAL VAL MET LYS GLY ASP LYS GLU PHE SER SEQRES 5 A 121 GLY VAL LEU ARG GLY PHE ASP GLU TYR VAL ASN MET VAL SEQRES 6 A 121 LEU ASP ASP VAL GLN GLU TYR GLY PHE LYS ALA ASP GLU SEQRES 7 A 121 GLU ASP ILE SER GLY GLY ASN LYS LYS LEU LYS ARG VAL SEQRES 8 A 121 MET VAL ASN ARG LEU GLU THR ILE LEU LEU SER GLY ASN SEQRES 9 A 121 ASN VAL ALA MET LEU VAL PRO GLY GLY ASP PRO ASP SER SEQRES 10 A 121 PHE ASN PHE SER SEQRES 1 B 121 SER TYR LYS VAL ASN TYR MET SER GLU THR PRO ALA ASN SEQRES 2 B 121 LYS SER GLN GLY GLY SER ASN GLN LYS GLY GLY ASN ILE SEQRES 3 B 121 ILE LEU PRO LEU ALA LEU ILE ASP LYS CYS ILE GLY ASN SEQRES 4 B 121 ARG ILE TYR VAL VAL MET LYS GLY ASP LYS GLU PHE SER SEQRES 5 B 121 GLY VAL LEU ARG GLY PHE ASP GLU TYR VAL ASN MET VAL SEQRES 6 B 121 LEU ASP ASP VAL GLN GLU TYR GLY PHE LYS ALA ASP GLU SEQRES 7 B 121 GLU ASP ILE SER GLY GLY ASN LYS LYS LEU LYS ARG VAL SEQRES 8 B 121 MET VAL ASN ARG LEU GLU THR ILE LEU LEU SER GLY ASN SEQRES 9 B 121 ASN VAL ALA MET LEU VAL PRO GLY GLY ASP PRO ASP SER SEQRES 10 B 121 PHE ASN PHE SER FORMUL 3 HOH *27(H2 O) HELIX 1 1 LEU A 28 CYS A 36 1 9 HELIX 2 2 SER A 102 ASN A 104 5 3 HELIX 3 3 LEU B 28 CYS B 36 1 9 SHEET 1 A 3 ARG A 90 LEU A 96 0 SHEET 2 A 3 MET A 64 PHE A 74 -1 N GLU A 71 O ASN A 94 SHEET 3 A 3 ILE A 99 LEU A 101 -1 O LEU A 101 N MET A 64 SHEET 1 B10 ARG A 90 LEU A 96 0 SHEET 2 B10 MET A 64 PHE A 74 -1 N GLU A 71 O ASN A 94 SHEET 3 B10 GLU A 50 PHE A 58 -1 N VAL A 54 O ASP A 67 SHEET 4 B10 ARG A 40 MET A 45 -1 N ILE A 41 O GLY A 53 SHEET 5 B10 VAL A 106 PRO A 111 -1 O VAL A 110 N TYR A 42 SHEET 6 B10 ARG B 90 LEU B 101 -1 O LEU B 100 N LEU A 109 SHEET 7 B10 MET B 64 PHE B 74 -1 N GLY B 73 O VAL B 91 SHEET 8 B10 LYS B 49 PHE B 58 -1 N VAL B 54 O ASP B 67 SHEET 9 B10 ARG B 40 MET B 45 -1 N ILE B 41 O GLY B 53 SHEET 10 B10 VAL B 106 VAL B 110 -1 O MET B 108 N VAL B 44 CRYST1 101.163 101.163 49.092 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009885 0.005707 0.000000 0.00000 SCALE2 0.000000 0.011414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020370 0.00000