HEADER HYDROLASE/HYDROLASE INHIBITOR 02-NOV-10 3PGL TITLE CRYSTAL STRUCTURE OF HUMAN SMALL C-TERMINAL DOMAIN PHOSPHATASE 1 TITLE 2 (SCP1) BOUND TO RABEPRAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXY-TERMINAL DOMAIN RNA POLYMERASE II POLYPEPTIDE A COMPND 3 SMALL PHOSPHATASE 1; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: NUCLEAR LIM INTERACTOR-INTERACTING FACTOR 3, NLI-IF, NLI- COMPND 6 INTERACTING FACTOR 3, SMALL C-TERMINAL DOMAIN PHOSPHATASE 1, SCP1, COMPND 7 SMALL CTD PHOSPHATASE 1; COMPND 8 EC: 3.1.3.16; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTDSP1, CTDSP1 OR SCP1, NIF3, NLIIF, SCP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS8 KEYWDS HAD FAMILY, INSERTION DOMAIN, CTD PHOSPHATASE, NEURONAL SILENCER, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHANG,E.J.CHO,G.BURSTEIN,D.SIEGEL,Y.ZHANG REVDAT 4 21-FEB-24 3PGL 1 REMARK LINK REVDAT 3 08-NOV-17 3PGL 1 REMARK REVDAT 2 01-JUN-11 3PGL 1 JRNL REVDAT 1 09-MAR-11 3PGL 0 JRNL AUTH M.ZHANG,E.J.CHO,G.BURSTEIN,D.SIEGEL,Y.ZHANG JRNL TITL SELECTIVE INACTIVATION OF A HUMAN NEURONAL SILENCING JRNL TITL 2 PHOSPHATASE BY A SMALL MOLECULE INHIBITOR. JRNL REF ACS CHEM.BIOL. V. 6 511 2011 JRNL REFN ISSN 1554-8929 JRNL PMID 21348431 JRNL DOI 10.1021/CB100357T REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 20188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1097 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 784 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 47.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2928 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : 1.49000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.76000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.256 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.018 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3027 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4116 ; 1.977 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 7.120 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;37.785 ;23.590 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 492 ;18.650 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;21.536 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 455 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2347 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1808 ; 0.929 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2938 ; 1.781 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1219 ; 2.834 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1178 ; 4.490 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 3PGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) LIQUID REMARK 200 N2 COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21285 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 64.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 0.2 M MAGNESIUM ACETATE, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.76250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.76250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG B 1 O HOH B 66 1.68 REMARK 500 O GLU B 242 OG SER B 245 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 136 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 227 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 200 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 97 -80.35 -93.76 REMARK 500 GLU A 99 -1.20 67.33 REMARK 500 ASN A 111 69.67 -108.81 REMARK 500 PHE A 177 -158.68 -122.33 REMARK 500 HIS A 215 58.11 -142.43 REMARK 500 ARG A 255 46.00 135.21 REMARK 500 THR B 100 -64.56 -105.40 REMARK 500 ASP B 121 80.05 42.60 REMARK 500 SER B 193 -6.11 -47.68 REMARK 500 ARG B 201 50.32 -110.76 REMARK 500 HIS B 215 61.67 -161.77 REMARK 500 PHE B 226 -57.98 -140.60 REMARK 500 ASP B 227 -2.47 -159.25 REMARK 500 ARG B 255 86.18 68.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 2 O REMARK 620 2 HOH A 32 O 84.1 REMARK 620 3 ASP A 96 OD2 98.4 177.5 REMARK 620 4 ASP A 98 O 167.3 89.8 87.8 REMARK 620 5 ASN A 207 OD1 99.8 94.3 84.8 91.7 REMARK 620 6 HOH A 258 O 83.1 86.5 94.3 85.4 177.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 2 O REMARK 620 2 HOH B 4 O 102.9 REMARK 620 3 ASP B 96 OD2 159.3 92.5 REMARK 620 4 ASP B 98 O 79.0 164.0 82.4 REMARK 620 5 ASN B 207 OD1 87.4 72.9 84.0 91.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RZX A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L0B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SCP1 PHOSPHATASE D206A MUTANT PHOSPHORYL- REMARK 900 INTERMEDIATE REMARK 900 RELATED ID: 3L0C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SCP1 PHOSPHATASE D206A MUTANT WITH TRAPPED REMARK 900 INORGANIC PHOSPHATE REMARK 900 RELATED ID: 3L0Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SCP1 PHOSPHATASE D98A MUTANT REMARK 900 RELATED ID: 2GHQ RELATED DB: PDB REMARK 900 CTD-SPECIFIC PHOSPHATASE SCP1 IN COMPLEX WITH PEPTIDE C-TERMINAL REMARK 900 DOMAIN OF RNA POLYMERASE II REMARK 900 RELATED ID: 2GHT RELATED DB: PDB REMARK 900 CTD-SPECIFIC PHOSPHATASE SCP1 IN COMPLEX WITH PEPTIDE FROM C- REMARK 900 TERMINAL DOMAIN OF RNA POLYMERASE II REMARK 900 RELATED ID: 1T9Z RELATED DB: PDB REMARK 900 THREE-DIMENSIONAL STRUCTURE OF A RNA-POLYMERASE II BINDING PROTEIN DBREF 3PGL A 77 256 UNP Q9GZU7 CTDS1_HUMAN 77 256 DBREF 3PGL B 77 256 UNP Q9GZU7 CTDS1_HUMAN 77 256 SEQRES 1 A 180 GLN TYR LEU LEU PRO GLU ALA LYS ALA GLN ASP SER ASP SEQRES 2 A 180 LYS ILE CYS VAL VAL ILE ASP LEU ASP GLU THR LEU VAL SEQRES 3 A 180 HIS SER SER PHE LYS PRO VAL ASN ASN ALA ASP PHE ILE SEQRES 4 A 180 ILE PRO VAL GLU ILE ASP GLY VAL VAL HIS GLN VAL TYR SEQRES 5 A 180 VAL LEU LYS ARG PRO HIS VAL ASP GLU PHE LEU GLN ARG SEQRES 6 A 180 MET GLY GLU LEU PHE GLU CYS VAL LEU PHE THR ALA SER SEQRES 7 A 180 LEU ALA LYS TYR ALA ASP PRO VAL ALA ASP LEU LEU ASP SEQRES 8 A 180 LYS TRP GLY ALA PHE ARG ALA ARG LEU PHE ARG GLU SER SEQRES 9 A 180 CYS VAL PHE HIS ARG GLY ASN TYR VAL LYS ASP LEU SER SEQRES 10 A 180 ARG LEU GLY ARG ASP LEU ARG ARG VAL LEU ILE LEU ASP SEQRES 11 A 180 ASN SER PRO ALA SER TYR VAL PHE HIS PRO ASP ASN ALA SEQRES 12 A 180 VAL PRO VAL ALA SER TRP PHE ASP ASN MET SER ASP THR SEQRES 13 A 180 GLU LEU HIS ASP LEU LEU PRO PHE PHE GLU GLN LEU SER SEQRES 14 A 180 ARG VAL ASP ASP VAL TYR SER VAL LEU ARG GLN SEQRES 1 B 180 GLN TYR LEU LEU PRO GLU ALA LYS ALA GLN ASP SER ASP SEQRES 2 B 180 LYS ILE CYS VAL VAL ILE ASP LEU ASP GLU THR LEU VAL SEQRES 3 B 180 HIS SER SER PHE LYS PRO VAL ASN ASN ALA ASP PHE ILE SEQRES 4 B 180 ILE PRO VAL GLU ILE ASP GLY VAL VAL HIS GLN VAL TYR SEQRES 5 B 180 VAL LEU LYS ARG PRO HIS VAL ASP GLU PHE LEU GLN ARG SEQRES 6 B 180 MET GLY GLU LEU PHE GLU CYS VAL LEU PHE THR ALA SER SEQRES 7 B 180 LEU ALA LYS TYR ALA ASP PRO VAL ALA ASP LEU LEU ASP SEQRES 8 B 180 LYS TRP GLY ALA PHE ARG ALA ARG LEU PHE ARG GLU SER SEQRES 9 B 180 CYS VAL PHE HIS ARG GLY ASN TYR VAL LYS ASP LEU SER SEQRES 10 B 180 ARG LEU GLY ARG ASP LEU ARG ARG VAL LEU ILE LEU ASP SEQRES 11 B 180 ASN SER PRO ALA SER TYR VAL PHE HIS PRO ASP ASN ALA SEQRES 12 B 180 VAL PRO VAL ALA SER TRP PHE ASP ASN MET SER ASP THR SEQRES 13 B 180 GLU LEU HIS ASP LEU LEU PRO PHE PHE GLU GLN LEU SER SEQRES 14 B 180 ARG VAL ASP ASP VAL TYR SER VAL LEU ARG GLN HET MG A 1 1 HET RZX A 257 25 HET MG B 1 1 HETNAM MG MAGNESIUM ION HETNAM RZX 2-[(R)-{[4-(3-METHOXYPROPOXY)-3-METHYLPYRIDIN-2- HETNAM 2 RZX YL]METHYL}SULFINYL]-1H-BENZIMIDAZOLE HETSYN RZX RABEPRAZOLE FORMUL 3 MG 2(MG 2+) FORMUL 4 RZX C18 H21 N3 O3 S FORMUL 6 HOH *112(H2 O) HELIX 1 1 HIS A 134 PHE A 146 1 13 HELIX 2 2 LEU A 155 ASP A 167 1 13 HELIX 3 3 PHE A 177 CYS A 181 5 5 HELIX 4 4 ASP A 191 LEU A 195 5 5 HELIX 5 5 ASP A 198 ARG A 200 5 3 HELIX 6 6 SER A 208 VAL A 213 5 6 HELIX 7 7 HIS A 215 ASP A 217 5 3 HELIX 8 8 THR A 232 VAL A 247 1 16 HELIX 9 9 ASP A 249 VAL A 253 5 5 HELIX 10 10 LYS B 84 SER B 88 5 5 HELIX 11 11 HIS B 134 PHE B 146 1 13 HELIX 12 12 LEU B 155 ASP B 167 1 13 HELIX 13 13 PHE B 177 CYS B 181 5 5 HELIX 14 14 ASP B 191 LEU B 195 5 5 HELIX 15 15 ASP B 198 ARG B 200 5 3 HELIX 16 16 SER B 208 VAL B 213 5 6 HELIX 17 17 HIS B 215 ASP B 217 5 3 HELIX 18 18 LEU B 237 VAL B 247 1 11 HELIX 19 19 VAL B 250 ARG B 255 1 6 SHEET 1 A 5 PHE A 172 LEU A 176 0 SHEET 2 A 5 GLU A 147 PHE A 151 1 N LEU A 150 O LEU A 176 SHEET 3 A 5 CYS A 92 ILE A 95 1 N ILE A 95 O VAL A 149 SHEET 4 A 5 VAL A 202 ASP A 206 1 O LEU A 203 N VAL A 94 SHEET 5 A 5 ALA A 219 PRO A 221 1 O VAL A 220 N ILE A 204 SHEET 1 B 3 VAL A 102 SER A 105 0 SHEET 2 B 3 VAL A 123 LYS A 131 -1 O TYR A 128 N SER A 105 SHEET 3 B 3 PHE A 114 ILE A 120 -1 N PHE A 114 O VAL A 129 SHEET 1 C 2 VAL A 182 HIS A 184 0 SHEET 2 C 2 ASN A 187 VAL A 189 -1 O VAL A 189 N VAL A 182 SHEET 1 D 5 PHE B 172 LEU B 176 0 SHEET 2 D 5 GLU B 147 PHE B 151 1 N CYS B 148 O ARG B 173 SHEET 3 D 5 CYS B 92 ILE B 95 1 N ILE B 95 O PHE B 151 SHEET 4 D 5 VAL B 202 ASP B 206 1 O LEU B 203 N CYS B 92 SHEET 5 D 5 ALA B 219 PRO B 221 1 O VAL B 220 N ILE B 204 SHEET 1 E 3 VAL B 102 SER B 105 0 SHEET 2 E 3 VAL B 123 LYS B 131 -1 O TYR B 128 N SER B 105 SHEET 3 E 3 PHE B 114 ILE B 120 -1 N VAL B 118 O HIS B 125 SHEET 1 F 2 VAL B 182 HIS B 184 0 SHEET 2 F 2 ASN B 187 VAL B 189 -1 O VAL B 189 N VAL B 182 LINK MG MG A 1 O HOH A 2 1555 1555 1.88 LINK MG MG A 1 O HOH A 32 1555 1555 2.27 LINK MG MG A 1 OD2 ASP A 96 1555 1555 1.99 LINK MG MG A 1 O ASP A 98 1555 1555 2.11 LINK MG MG A 1 OD1 ASN A 207 1555 1555 2.12 LINK MG MG A 1 O HOH A 258 1555 1555 1.89 LINK MG MG B 1 O HOH B 2 1555 1555 2.27 LINK MG MG B 1 O HOH B 4 1555 1555 1.92 LINK MG MG B 1 OD2 ASP B 96 1555 1555 2.27 LINK MG MG B 1 O ASP B 98 1555 1555 2.17 LINK MG MG B 1 OD1 ASN B 207 1555 1555 2.22 SITE 1 AC1 6 HOH A 2 HOH A 32 ASP A 96 ASP A 98 SITE 2 AC1 6 ASN A 207 HOH A 258 SITE 1 AC2 6 HOH A 21 HOH A 39 VAL A 118 TYR A 158 SITE 2 AC2 6 ARG A 178 TYR A 188 SITE 1 AC3 6 HOH B 2 HOH B 4 HOH B 66 ASP B 96 SITE 2 AC3 6 ASP B 98 ASN B 207 CRYST1 125.525 78.260 62.682 90.00 111.93 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007967 0.000000 0.003207 0.00000 SCALE2 0.000000 0.012778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017198 0.00000