data_3PI2 # _entry.id 3PI2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3PI2 RCSB RCSB062396 WWPDB D_1000062396 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2OLP . unspecified PDB 3PI1 . unspecified PDB 3PI2 . unspecified PDB 3PI4 . unspecified # _pdbx_database_status.entry_id 3PI2 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-11-05 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gavira, J.A.' 1 'Nieves-Marrero, C.A.' 2 'Ruiz-Martinez, C.R.' 3 'Estremera-Andujar, R.A.' 4 'Lopez-Garriga, J.' 5 'Garcia-Ruiz, J.M.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'pH-dependence crystallographic studies of the oxygen carrier hemoglobin II from Lucina pectinata' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 1 'Two-step counterdiffusion protocol for the crystallization of heamoglobin II from Lucina pectinata in the pH range 4-9' 'Acta Crystallogr.,Sect.F' F66 264 268 2010 ? DK 1744-3091 ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nieves-Marrero, C.A.' 1 primary 'Ruiz-Martinez, C.R.' 2 primary 'Estremera-Andujar, R.A.' 3 primary 'Lopez-Garriga, J.' 4 primary 'Garcia-Ruiz, J.M.' 5 primary 'Gavira, J.A.' 6 1 'Nieves-Marrero, C.A.' 7 1 'Ruiz-Martinez, C.R.' 8 1 'Estremera-Andujar, R.A.' 9 1 'Gonzalez-Ramirez, L.A.' 10 1 'Lopez-Garriga, J.' 11 1 'Gavira, J.A.' 12 # _cell.entry_id 3PI2 _cell.length_a 74.706 _cell.length_b 74.706 _cell.length_c 152.646 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PI2 _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Hemoglobin II' 17041.557 2 ? ? ? ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 2 ? ? ? ? 3 non-polymer syn 'OXYGEN MOLECULE' 31.999 2 ? ? ? ? 4 non-polymer syn 'FORMIC ACID' 46.025 1 ? ? ? ? 5 water nat water 18.015 268 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Lucina pectinata' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(ACE)TTLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSS FVDHLDDNDMLVVLIQKMAKLHNNRGIRASDLRTAYDILIHYMEDHNHMVGGAKDAWEVFVGFICKTLGDYMKELS ; _entity_poly.pdbx_seq_one_letter_code_can ;XTTLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSSFVDH LDDNDMLVVLIQKMAKLHNNRGIRASDLRTAYDILIHYMEDHNHMVGGAKDAWEVFVGFICKTLGDYMKELS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 THR n 1 3 THR n 1 4 LEU n 1 5 THR n 1 6 ASN n 1 7 PRO n 1 8 GLN n 1 9 LYS n 1 10 ALA n 1 11 ALA n 1 12 ILE n 1 13 ARG n 1 14 SER n 1 15 SER n 1 16 TRP n 1 17 SER n 1 18 LYS n 1 19 PHE n 1 20 MET n 1 21 ASP n 1 22 ASN n 1 23 GLY n 1 24 VAL n 1 25 SER n 1 26 ASN n 1 27 GLY n 1 28 GLN n 1 29 GLY n 1 30 PHE n 1 31 TYR n 1 32 MET n 1 33 ASP n 1 34 LEU n 1 35 PHE n 1 36 LYS n 1 37 ALA n 1 38 HIS n 1 39 PRO n 1 40 GLU n 1 41 THR n 1 42 LEU n 1 43 THR n 1 44 PRO n 1 45 PHE n 1 46 LYS n 1 47 SER n 1 48 LEU n 1 49 PHE n 1 50 GLY n 1 51 GLY n 1 52 LEU n 1 53 THR n 1 54 LEU n 1 55 ALA n 1 56 GLN n 1 57 LEU n 1 58 GLN n 1 59 ASP n 1 60 ASN n 1 61 PRO n 1 62 LYS n 1 63 MET n 1 64 LYS n 1 65 ALA n 1 66 GLN n 1 67 SER n 1 68 LEU n 1 69 VAL n 1 70 PHE n 1 71 CYS n 1 72 ASN n 1 73 GLY n 1 74 MET n 1 75 SER n 1 76 SER n 1 77 PHE n 1 78 VAL n 1 79 ASP n 1 80 HIS n 1 81 LEU n 1 82 ASP n 1 83 ASP n 1 84 ASN n 1 85 ASP n 1 86 MET n 1 87 LEU n 1 88 VAL n 1 89 VAL n 1 90 LEU n 1 91 ILE n 1 92 GLN n 1 93 LYS n 1 94 MET n 1 95 ALA n 1 96 LYS n 1 97 LEU n 1 98 HIS n 1 99 ASN n 1 100 ASN n 1 101 ARG n 1 102 GLY n 1 103 ILE n 1 104 ARG n 1 105 ALA n 1 106 SER n 1 107 ASP n 1 108 LEU n 1 109 ARG n 1 110 THR n 1 111 ALA n 1 112 TYR n 1 113 ASP n 1 114 ILE n 1 115 LEU n 1 116 ILE n 1 117 HIS n 1 118 TYR n 1 119 MET n 1 120 GLU n 1 121 ASP n 1 122 HIS n 1 123 ASN n 1 124 HIS n 1 125 MET n 1 126 VAL n 1 127 GLY n 1 128 GLY n 1 129 ALA n 1 130 LYS n 1 131 ASP n 1 132 ALA n 1 133 TRP n 1 134 GLU n 1 135 VAL n 1 136 PHE n 1 137 VAL n 1 138 GLY n 1 139 PHE n 1 140 ILE n 1 141 CYS n 1 142 LYS n 1 143 THR n 1 144 LEU n 1 145 GLY n 1 146 ASP n 1 147 TYR n 1 148 MET n 1 149 LYS n 1 150 GLU n 1 151 LEU n 1 152 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'Lucina pectinata' _entity_src_nat.pdbx_organism_scientific 'Phacoides pectinatus' _entity_src_nat.pdbx_ncbi_taxonomy_id 244486 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q86G74_LUCPE _struct_ref.pdbx_db_accession Q86G74 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TTLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSSFVDHL DDNDMLVVLIQKMAKLHNNRGIRASDLRTAYDILIHYMEDHNHMVGGAKDAWEVFVGFICKTLGDYMKELS ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3PI2 A 2 ? 152 ? Q86G74 2 ? 152 ? 1 151 2 1 3PI2 B 2 ? 152 ? Q86G74 2 ? 152 ? 1 151 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3PI2 ACE A 1 ? UNP Q86G74 ? ? ACETYLATION 0 1 2 3PI2 ACE B 1 ? UNP Q86G74 ? ? ACETYLATION 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OXY non-polymer . 'OXYGEN MOLECULE' ? O2 31.999 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3PI2 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.13 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 60.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'Capillary Counterdiffusion' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.pdbx_details 'Sodium Formate, pH 8.0, Capillary Counterdiffusion, temperature 293.0K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4r' _diffrn_detector.pdbx_collection_date 2008-11-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.90750 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM16' _diffrn_source.pdbx_wavelength_list 0.90750 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM16 # _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 1.85 _reflns.number_obs 37050 _reflns.number_all 37050 _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rsym_value 0.069 _reflns.pdbx_netI_over_sigmaI 25.911 _reflns.pdbx_redundancy 8.5 _reflns.entry_id 3PI2 _reflns.B_iso_Wilson_estimate 28.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.491 _reflns_shell.pdbx_Rsym_value 0.491 _reflns_shell.meanI_over_sigI_obs 4.347 _reflns_shell.pdbx_redundancy 8.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3PI2 _refine.ls_d_res_high 1.8500 _refine.ls_d_res_low 20.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.3500 _refine.ls_number_reflns_obs 37050 _refine.ls_number_reflns_all 37050 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1850 _refine.ls_R_factor_R_work 0.1835 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2139 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 1864 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 31.6376 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.0700 _refine.aniso_B[2][2] 1.0700 _refine.aniso_B[3][3] -2.1400 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9610 _refine.correlation_coeff_Fo_to_Fc_free 0.9450 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.1160 _refine.overall_SU_ML 0.0810 _refine.overall_SU_B 2.6820 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 72.890 _refine.B_iso_min 16.290 _refine.occupancy_max 1.000 _refine.occupancy_min 0.340 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2356 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 93 _refine_hist.number_atoms_solvent 268 _refine_hist.number_atoms_total 2717 _refine_hist.d_res_high 1.8500 _refine_hist.d_res_low 20.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2675 0.029 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 2 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3665 2.205 2.041 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3 2.044 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 340 5.361 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 118 40.282 25.085 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 451 15.178 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 26.198 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 379 0.174 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2065 0.014 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1598 1.539 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 1 0.180 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2579 2.460 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1077 4.063 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1078 5.490 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.8510 _refine_ls_shell.d_res_low 1.8990 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.9300 _refine_ls_shell.number_reflns_R_work 2578 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2500 _refine_ls_shell.R_factor_R_free 0.2730 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 128 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2706 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3PI2 _struct.title 'Crystallographic Structure of HbII-oxy from Lucina pectinata at pH 8.0' _struct.pdbx_descriptor 'Hemoglobin II' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3PI2 _struct_keywords.text 'pH behavior, Oxygen Carrier, OXYGEN TRANSPORT' _struct_keywords.pdbx_keywords 'OXYGEN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 5 ? ASN A 22 ? THR A 4 ASN A 21 1 ? 18 HELX_P HELX_P2 2 ASN A 22 ? HIS A 38 ? ASN A 21 HIS A 37 1 ? 17 HELX_P HELX_P3 3 PRO A 39 ? PRO A 44 ? PRO A 38 PRO A 43 5 ? 6 HELX_P HELX_P4 4 PHE A 45 ? GLY A 50 ? PHE A 44 GLY A 49 1 ? 6 HELX_P HELX_P5 5 THR A 53 ? GLN A 58 ? THR A 52 GLN A 57 1 ? 6 HELX_P HELX_P6 6 ASN A 60 ? ASP A 79 ? ASN A 59 ASP A 78 1 ? 20 HELX_P HELX_P7 7 ASP A 83 ? ASN A 100 ? ASP A 82 ASN A 99 1 ? 18 HELX_P HELX_P8 8 ARG A 104 ? HIS A 122 ? ARG A 103 HIS A 121 1 ? 19 HELX_P HELX_P9 9 GLY A 128 ? GLU A 150 ? GLY A 127 GLU A 149 1 ? 23 HELX_P HELX_P10 10 THR B 5 ? ASP B 21 ? THR B 4 ASP B 20 1 ? 17 HELX_P HELX_P11 11 ASN B 22 ? HIS B 38 ? ASN B 21 HIS B 37 1 ? 17 HELX_P HELX_P12 12 PRO B 39 ? PRO B 44 ? PRO B 38 PRO B 43 5 ? 6 HELX_P HELX_P13 13 PHE B 45 ? GLY B 50 ? PHE B 44 GLY B 49 1 ? 6 HELX_P HELX_P14 14 THR B 53 ? LEU B 57 ? THR B 52 LEU B 56 5 ? 5 HELX_P HELX_P15 15 ASN B 60 ? ASP B 79 ? ASN B 59 ASP B 78 1 ? 20 HELX_P HELX_P16 16 ASP B 83 ? ASN B 100 ? ASP B 82 ASN B 99 1 ? 18 HELX_P HELX_P17 17 ARG B 104 ? HIS B 122 ? ARG B 103 HIS B 121 1 ? 19 HELX_P HELX_P18 18 GLY B 128 ? GLU B 150 ? GLY B 127 GLU B 149 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? C HEM . FE ? ? ? 1_555 D OXY . O2 ? ? A HEM 500 A OXY 501 1_555 ? ? ? ? ? ? ? 1.820 ? metalc2 metalc ? ? E HEM . FE ? ? ? 1_555 F OXY . O2 ? ? B HEM 201 B OXY 202 1_555 ? ? ? ? ? ? ? 1.855 ? metalc3 metalc ? ? B HIS 98 NE2 ? ? ? 1_555 E HEM . FE ? ? B HIS 97 B HEM 201 1_555 ? ? ? ? ? ? ? 2.142 ? metalc4 metalc ? ? A HIS 98 NE2 ? ? ? 1_555 C HEM . FE ? ? A HIS 97 A HEM 500 1_555 ? ? ? ? ? ? ? 2.187 ? metalc5 metalc ? ? C HEM . FE ? ? ? 1_555 D OXY . O1 ? ? A HEM 500 A OXY 501 1_555 ? ? ? ? ? ? ? 2.574 ? metalc6 metalc ? ? E HEM . FE ? ? ? 1_555 F OXY . O1 ? ? B HEM 201 B OXY 202 1_555 ? ? ? ? ? ? ? 2.637 ? covale1 covale ? ? B THR 2 N ? ? ? 1_555 B ACE 1 C ? ? B THR 1 B ACE 0 1_555 ? ? ? ? ? ? ? 1.317 ? covale2 covale ? ? A ACE 1 C ? ? ? 1_555 A THR 2 N ? ? A ACE 0 A THR 1 1_555 ? ? ? ? ? ? ? 1.334 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 23 'BINDING SITE FOR RESIDUE HEM A 500' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE OXY A 501' AC3 Software ? ? ? ? 23 'BINDING SITE FOR RESIDUE HEM B 201' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE OXY B 202' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE FMT B 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 PRO A 44 ? PRO A 43 . ? 1_555 ? 2 AC1 23 PHE A 45 ? PHE A 44 . ? 1_555 ? 3 AC1 23 LEU A 48 ? LEU A 47 . ? 1_555 ? 4 AC1 23 GLN A 66 ? GLN A 65 . ? 1_555 ? 5 AC1 23 VAL A 69 ? VAL A 68 . ? 1_555 ? 6 AC1 23 PHE A 70 ? PHE A 69 . ? 1_555 ? 7 AC1 23 MET A 74 ? MET A 73 . ? 1_555 ? 8 AC1 23 MET A 94 ? MET A 93 . ? 1_555 ? 9 AC1 23 LEU A 97 ? LEU A 96 . ? 1_555 ? 10 AC1 23 HIS A 98 ? HIS A 97 . ? 1_555 ? 11 AC1 23 ARG A 101 ? ARG A 100 . ? 1_555 ? 12 AC1 23 ILE A 103 ? ILE A 102 . ? 1_555 ? 13 AC1 23 ASP A 107 ? ASP A 106 . ? 1_555 ? 14 AC1 23 LEU A 108 ? LEU A 107 . ? 1_555 ? 15 AC1 23 TYR A 112 ? TYR A 111 . ? 1_555 ? 16 AC1 23 OXY D . ? OXY A 501 . ? 1_555 ? 17 AC1 23 HOH H . ? HOH A 607 . ? 1_555 ? 18 AC1 23 HOH H . ? HOH A 615 . ? 1_555 ? 19 AC1 23 HOH H . ? HOH A 617 . ? 1_555 ? 20 AC1 23 HOH H . ? HOH A 652 . ? 1_555 ? 21 AC1 23 HOH H . ? HOH A 681 . ? 1_555 ? 22 AC1 23 LYS B 93 ? LYS B 92 . ? 1_555 ? 23 AC1 23 LEU B 97 ? LEU B 96 . ? 1_555 ? 24 AC2 4 TYR A 31 ? TYR A 30 . ? 1_555 ? 25 AC2 4 PHE A 45 ? PHE A 44 . ? 1_555 ? 26 AC2 4 GLN A 66 ? GLN A 65 . ? 1_555 ? 27 AC2 4 HEM C . ? HEM A 500 . ? 1_555 ? 28 AC3 23 LYS A 93 ? LYS A 92 . ? 1_555 ? 29 AC3 23 LEU A 97 ? LEU A 96 . ? 1_555 ? 30 AC3 23 PRO B 44 ? PRO B 43 . ? 1_555 ? 31 AC3 23 PHE B 45 ? PHE B 44 . ? 1_555 ? 32 AC3 23 LEU B 48 ? LEU B 47 . ? 1_555 ? 33 AC3 23 GLN B 66 ? GLN B 65 . ? 1_555 ? 34 AC3 23 VAL B 69 ? VAL B 68 . ? 1_555 ? 35 AC3 23 PHE B 70 ? PHE B 69 . ? 1_555 ? 36 AC3 23 MET B 74 ? MET B 73 . ? 1_555 ? 37 AC3 23 MET B 94 ? MET B 93 . ? 1_555 ? 38 AC3 23 LEU B 97 ? LEU B 96 . ? 1_555 ? 39 AC3 23 HIS B 98 ? HIS B 97 . ? 1_555 ? 40 AC3 23 ARG B 101 ? ARG B 100 . ? 1_555 ? 41 AC3 23 ILE B 103 ? ILE B 102 . ? 1_555 ? 42 AC3 23 LEU B 108 ? LEU B 107 . ? 1_555 ? 43 AC3 23 TYR B 112 ? TYR B 111 . ? 1_555 ? 44 AC3 23 OXY F . ? OXY B 202 . ? 1_555 ? 45 AC3 23 HOH I . ? HOH B 307 . ? 1_555 ? 46 AC3 23 HOH I . ? HOH B 314 . ? 1_555 ? 47 AC3 23 HOH I . ? HOH B 326 . ? 1_555 ? 48 AC3 23 HOH I . ? HOH B 332 . ? 1_555 ? 49 AC3 23 HOH I . ? HOH B 379 . ? 1_555 ? 50 AC3 23 HOH I . ? HOH B 426 . ? 1_555 ? 51 AC4 4 TYR B 31 ? TYR B 30 . ? 1_555 ? 52 AC4 4 PHE B 45 ? PHE B 44 . ? 1_555 ? 53 AC4 4 GLN B 66 ? GLN B 65 . ? 1_555 ? 54 AC4 4 HEM E . ? HEM B 201 . ? 1_555 ? 55 AC5 2 GLU B 40 ? GLU B 39 . ? 1_555 ? 56 AC5 2 ASP B 107 ? ASP B 106 . ? 1_555 ? # _atom_sites.entry_id 3PI2 _atom_sites.fract_transf_matrix[1][1] 0.013386 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013386 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006551 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 THR 2 1 1 THR THR A . n A 1 3 THR 3 2 2 THR THR A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 ASN 6 5 5 ASN ASN A . n A 1 7 PRO 7 6 6 PRO PRO A . n A 1 8 GLN 8 7 7 GLN GLN A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 ALA 11 10 10 ALA ALA A . n A 1 12 ILE 12 11 11 ILE ILE A . n A 1 13 ARG 13 12 12 ARG ARG A . n A 1 14 SER 14 13 13 SER SER A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 TRP 16 15 15 TRP TRP A . n A 1 17 SER 17 16 16 SER SER A . n A 1 18 LYS 18 17 17 LYS LYS A . n A 1 19 PHE 19 18 18 PHE PHE A . n A 1 20 MET 20 19 19 MET MET A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 VAL 24 23 23 VAL VAL A . n A 1 25 SER 25 24 24 SER SER A . n A 1 26 ASN 26 25 25 ASN ASN A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 GLN 28 27 27 GLN GLN A . n A 1 29 GLY 29 28 28 GLY GLY A . n A 1 30 PHE 30 29 29 PHE PHE A . n A 1 31 TYR 31 30 30 TYR TYR A . n A 1 32 MET 32 31 31 MET MET A . n A 1 33 ASP 33 32 32 ASP ASP A . n A 1 34 LEU 34 33 33 LEU LEU A . n A 1 35 PHE 35 34 34 PHE PHE A . n A 1 36 LYS 36 35 35 LYS LYS A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 HIS 38 37 37 HIS HIS A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 GLU 40 39 39 GLU GLU A . n A 1 41 THR 41 40 40 THR THR A . n A 1 42 LEU 42 41 41 LEU LEU A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 PRO 44 43 43 PRO PRO A . n A 1 45 PHE 45 44 44 PHE PHE A . n A 1 46 LYS 46 45 45 LYS LYS A . n A 1 47 SER 47 46 46 SER SER A . n A 1 48 LEU 48 47 47 LEU LEU A . n A 1 49 PHE 49 48 48 PHE PHE A . n A 1 50 GLY 50 49 49 GLY GLY A . n A 1 51 GLY 51 50 50 GLY GLY A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 THR 53 52 52 THR THR A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 GLN 56 55 55 GLN GLN A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 GLN 58 57 57 GLN GLN A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 ASN 60 59 59 ASN ASN A . n A 1 61 PRO 61 60 60 PRO PRO A . n A 1 62 LYS 62 61 61 LYS LYS A . n A 1 63 MET 63 62 62 MET MET A . n A 1 64 LYS 64 63 63 LYS LYS A . n A 1 65 ALA 65 64 64 ALA ALA A . n A 1 66 GLN 66 65 65 GLN GLN A . n A 1 67 SER 67 66 66 SER SER A . n A 1 68 LEU 68 67 67 LEU LEU A . n A 1 69 VAL 69 68 68 VAL VAL A . n A 1 70 PHE 70 69 69 PHE PHE A . n A 1 71 CYS 71 70 70 CYS CYS A . n A 1 72 ASN 72 71 71 ASN ASN A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 MET 74 73 73 MET MET A . n A 1 75 SER 75 74 74 SER SER A . n A 1 76 SER 76 75 75 SER SER A . n A 1 77 PHE 77 76 76 PHE PHE A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 HIS 80 79 79 HIS HIS A . n A 1 81 LEU 81 80 80 LEU LEU A . n A 1 82 ASP 82 81 81 ASP ASP A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 ASN 84 83 83 ASN ASN A . n A 1 85 ASP 85 84 84 ASP ASP A . n A 1 86 MET 86 85 85 MET MET A . n A 1 87 LEU 87 86 86 LEU LEU A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 VAL 89 88 88 VAL VAL A . n A 1 90 LEU 90 89 89 LEU LEU A . n A 1 91 ILE 91 90 90 ILE ILE A . n A 1 92 GLN 92 91 91 GLN GLN A . n A 1 93 LYS 93 92 92 LYS LYS A . n A 1 94 MET 94 93 93 MET MET A . n A 1 95 ALA 95 94 94 ALA ALA A . n A 1 96 LYS 96 95 95 LYS LYS A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 HIS 98 97 97 HIS HIS A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 ASN 100 99 99 ASN ASN A . n A 1 101 ARG 101 100 100 ARG ARG A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 ILE 103 102 102 ILE ILE A . n A 1 104 ARG 104 103 103 ARG ARG A . n A 1 105 ALA 105 104 104 ALA ALA A . n A 1 106 SER 106 105 105 SER SER A . n A 1 107 ASP 107 106 106 ASP ASP A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 ARG 109 108 108 ARG ARG A . n A 1 110 THR 110 109 109 THR THR A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 TYR 112 111 111 TYR TYR A . n A 1 113 ASP 113 112 112 ASP ASP A . n A 1 114 ILE 114 113 113 ILE ILE A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 ILE 116 115 115 ILE ILE A . n A 1 117 HIS 117 116 116 HIS HIS A . n A 1 118 TYR 118 117 117 TYR TYR A . n A 1 119 MET 119 118 118 MET MET A . n A 1 120 GLU 120 119 119 GLU GLU A . n A 1 121 ASP 121 120 120 ASP ASP A . n A 1 122 HIS 122 121 121 HIS HIS A . n A 1 123 ASN 123 122 122 ASN ASN A . n A 1 124 HIS 124 123 123 HIS HIS A . n A 1 125 MET 125 124 124 MET MET A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 GLY 127 126 126 GLY GLY A . n A 1 128 GLY 128 127 127 GLY GLY A . n A 1 129 ALA 129 128 128 ALA ALA A . n A 1 130 LYS 130 129 129 LYS LYS A . n A 1 131 ASP 131 130 130 ASP ASP A . n A 1 132 ALA 132 131 131 ALA ALA A . n A 1 133 TRP 133 132 132 TRP TRP A . n A 1 134 GLU 134 133 133 GLU GLU A . n A 1 135 VAL 135 134 134 VAL VAL A . n A 1 136 PHE 136 135 135 PHE PHE A . n A 1 137 VAL 137 136 136 VAL VAL A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 PHE 139 138 138 PHE PHE A . n A 1 140 ILE 140 139 139 ILE ILE A . n A 1 141 CYS 141 140 140 CYS CYS A . n A 1 142 LYS 142 141 141 LYS LYS A . n A 1 143 THR 143 142 142 THR THR A . n A 1 144 LEU 144 143 143 LEU LEU A . n A 1 145 GLY 145 144 144 GLY GLY A . n A 1 146 ASP 146 145 145 ASP ASP A . n A 1 147 TYR 147 146 146 TYR TYR A . n A 1 148 MET 148 147 147 MET MET A . n A 1 149 LYS 149 148 148 LYS LYS A . n A 1 150 GLU 150 149 149 GLU GLU A . n A 1 151 LEU 151 150 150 LEU LEU A . n A 1 152 SER 152 151 151 SER SER A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 THR 2 1 1 THR THR B . n B 1 3 THR 3 2 2 THR THR B . n B 1 4 LEU 4 3 3 LEU LEU B . n B 1 5 THR 5 4 4 THR THR B . n B 1 6 ASN 6 5 5 ASN ASN B . n B 1 7 PRO 7 6 6 PRO PRO B . n B 1 8 GLN 8 7 7 GLN GLN B . n B 1 9 LYS 9 8 8 LYS LYS B . n B 1 10 ALA 10 9 9 ALA ALA B . n B 1 11 ALA 11 10 10 ALA ALA B . n B 1 12 ILE 12 11 11 ILE ILE B . n B 1 13 ARG 13 12 12 ARG ARG B . n B 1 14 SER 14 13 13 SER SER B . n B 1 15 SER 15 14 14 SER SER B . n B 1 16 TRP 16 15 15 TRP TRP B . n B 1 17 SER 17 16 16 SER SER B . n B 1 18 LYS 18 17 17 LYS LYS B . n B 1 19 PHE 19 18 18 PHE PHE B . n B 1 20 MET 20 19 19 MET MET B . n B 1 21 ASP 21 20 20 ASP ASP B . n B 1 22 ASN 22 21 21 ASN ASN B . n B 1 23 GLY 23 22 22 GLY GLY B . n B 1 24 VAL 24 23 23 VAL VAL B . n B 1 25 SER 25 24 24 SER SER B . n B 1 26 ASN 26 25 25 ASN ASN B . n B 1 27 GLY 27 26 26 GLY GLY B . n B 1 28 GLN 28 27 27 GLN GLN B . n B 1 29 GLY 29 28 28 GLY GLY B . n B 1 30 PHE 30 29 29 PHE PHE B . n B 1 31 TYR 31 30 30 TYR TYR B . n B 1 32 MET 32 31 31 MET MET B . n B 1 33 ASP 33 32 32 ASP ASP B . n B 1 34 LEU 34 33 33 LEU LEU B . n B 1 35 PHE 35 34 34 PHE PHE B . n B 1 36 LYS 36 35 35 LYS LYS B . n B 1 37 ALA 37 36 36 ALA ALA B . n B 1 38 HIS 38 37 37 HIS HIS B . n B 1 39 PRO 39 38 38 PRO PRO B . n B 1 40 GLU 40 39 39 GLU GLU B . n B 1 41 THR 41 40 40 THR THR B . n B 1 42 LEU 42 41 41 LEU LEU B . n B 1 43 THR 43 42 42 THR THR B . n B 1 44 PRO 44 43 43 PRO PRO B . n B 1 45 PHE 45 44 44 PHE PHE B . n B 1 46 LYS 46 45 45 LYS LYS B . n B 1 47 SER 47 46 46 SER SER B . n B 1 48 LEU 48 47 47 LEU LEU B . n B 1 49 PHE 49 48 48 PHE PHE B . n B 1 50 GLY 50 49 49 GLY GLY B . n B 1 51 GLY 51 50 50 GLY GLY B . n B 1 52 LEU 52 51 51 LEU LEU B . n B 1 53 THR 53 52 52 THR THR B . n B 1 54 LEU 54 53 53 LEU LEU B . n B 1 55 ALA 55 54 54 ALA ALA B . n B 1 56 GLN 56 55 55 GLN GLN B . n B 1 57 LEU 57 56 56 LEU LEU B . n B 1 58 GLN 58 57 57 GLN GLN B . n B 1 59 ASP 59 58 58 ASP ASP B . n B 1 60 ASN 60 59 59 ASN ASN B . n B 1 61 PRO 61 60 60 PRO PRO B . n B 1 62 LYS 62 61 61 LYS LYS B . n B 1 63 MET 63 62 62 MET MET B . n B 1 64 LYS 64 63 63 LYS LYS B . n B 1 65 ALA 65 64 64 ALA ALA B . n B 1 66 GLN 66 65 65 GLN GLN B . n B 1 67 SER 67 66 66 SER SER B . n B 1 68 LEU 68 67 67 LEU LEU B . n B 1 69 VAL 69 68 68 VAL VAL B . n B 1 70 PHE 70 69 69 PHE PHE B . n B 1 71 CYS 71 70 70 CYS CYS B . n B 1 72 ASN 72 71 71 ASN ASN B . n B 1 73 GLY 73 72 72 GLY GLY B . n B 1 74 MET 74 73 73 MET MET B . n B 1 75 SER 75 74 74 SER SER B . n B 1 76 SER 76 75 75 SER SER B . n B 1 77 PHE 77 76 76 PHE PHE B . n B 1 78 VAL 78 77 77 VAL VAL B . n B 1 79 ASP 79 78 78 ASP ASP B . n B 1 80 HIS 80 79 79 HIS HIS B . n B 1 81 LEU 81 80 80 LEU LEU B . n B 1 82 ASP 82 81 81 ASP ASP B . n B 1 83 ASP 83 82 82 ASP ASP B . n B 1 84 ASN 84 83 83 ASN ASN B . n B 1 85 ASP 85 84 84 ASP ASP B . n B 1 86 MET 86 85 85 MET MET B . n B 1 87 LEU 87 86 86 LEU LEU B . n B 1 88 VAL 88 87 87 VAL VAL B . n B 1 89 VAL 89 88 88 VAL VAL B . n B 1 90 LEU 90 89 89 LEU LEU B . n B 1 91 ILE 91 90 90 ILE ILE B . n B 1 92 GLN 92 91 91 GLN GLN B . n B 1 93 LYS 93 92 92 LYS LYS B . n B 1 94 MET 94 93 93 MET MET B . n B 1 95 ALA 95 94 94 ALA ALA B . n B 1 96 LYS 96 95 95 LYS LYS B . n B 1 97 LEU 97 96 96 LEU LEU B . n B 1 98 HIS 98 97 97 HIS HIS B . n B 1 99 ASN 99 98 98 ASN ASN B . n B 1 100 ASN 100 99 99 ASN ASN B . n B 1 101 ARG 101 100 100 ARG ARG B . n B 1 102 GLY 102 101 101 GLY GLY B . n B 1 103 ILE 103 102 102 ILE ILE B . n B 1 104 ARG 104 103 103 ARG ARG B . n B 1 105 ALA 105 104 104 ALA ALA B . n B 1 106 SER 106 105 105 SER SER B . n B 1 107 ASP 107 106 106 ASP ASP B . n B 1 108 LEU 108 107 107 LEU LEU B . n B 1 109 ARG 109 108 108 ARG ARG B . n B 1 110 THR 110 109 109 THR THR B . n B 1 111 ALA 111 110 110 ALA ALA B . n B 1 112 TYR 112 111 111 TYR TYR B . n B 1 113 ASP 113 112 112 ASP ASP B . n B 1 114 ILE 114 113 113 ILE ILE B . n B 1 115 LEU 115 114 114 LEU LEU B . n B 1 116 ILE 116 115 115 ILE ILE B . n B 1 117 HIS 117 116 116 HIS HIS B . n B 1 118 TYR 118 117 117 TYR TYR B . n B 1 119 MET 119 118 118 MET MET B . n B 1 120 GLU 120 119 119 GLU GLU B . n B 1 121 ASP 121 120 120 ASP ASP B . n B 1 122 HIS 122 121 121 HIS HIS B . n B 1 123 ASN 123 122 122 ASN ASN B . n B 1 124 HIS 124 123 123 HIS HIS B . n B 1 125 MET 125 124 124 MET MET B . n B 1 126 VAL 126 125 125 VAL VAL B . n B 1 127 GLY 127 126 126 GLY GLY B . n B 1 128 GLY 128 127 127 GLY GLY B . n B 1 129 ALA 129 128 128 ALA ALA B . n B 1 130 LYS 130 129 129 LYS LYS B . n B 1 131 ASP 131 130 130 ASP ASP B . n B 1 132 ALA 132 131 131 ALA ALA B . n B 1 133 TRP 133 132 132 TRP TRP B . n B 1 134 GLU 134 133 133 GLU GLU B . n B 1 135 VAL 135 134 134 VAL VAL B . n B 1 136 PHE 136 135 135 PHE PHE B . n B 1 137 VAL 137 136 136 VAL VAL B . n B 1 138 GLY 138 137 137 GLY GLY B . n B 1 139 PHE 139 138 138 PHE PHE B . n B 1 140 ILE 140 139 139 ILE ILE B . n B 1 141 CYS 141 140 140 CYS CYS B . n B 1 142 LYS 142 141 141 LYS LYS B . n B 1 143 THR 143 142 142 THR THR B . n B 1 144 LEU 144 143 143 LEU LEU B . n B 1 145 GLY 145 144 144 GLY GLY B . n B 1 146 ASP 146 145 145 ASP ASP B . n B 1 147 TYR 147 146 146 TYR TYR B . n B 1 148 MET 148 147 147 MET MET B . n B 1 149 LYS 149 148 148 LYS LYS B . n B 1 150 GLU 150 149 149 GLU GLU B . n B 1 151 LEU 151 150 150 LEU LEU B . n B 1 152 SER 152 151 151 SER SER B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 3 software_defined_assembly PISA octameric 8 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I 2 1,2 A,B,C,D,E,F,G,H,I 3 1,3,4,2 A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5190 ? 1 MORE -57 ? 1 'SSA (A^2)' 12920 ? 2 'ABSA (A^2)' 11660 ? 2 MORE -126 ? 2 'SSA (A^2)' 24560 ? 3 'ABSA (A^2)' 27300 ? 3 MORE -245 ? 3 'SSA (A^2)' 45150 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B HOH 317 ? I HOH . 2 1 B HOH 395 ? I HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? D OXY . ? A OXY 501 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NA ? C HEM . ? A HEM 500 ? 1_555 88.1 ? 2 O2 ? D OXY . ? A OXY 501 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NB ? C HEM . ? A HEM 500 ? 1_555 89.3 ? 3 NA ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NB ? C HEM . ? A HEM 500 ? 1_555 95.1 ? 4 O2 ? D OXY . ? A OXY 501 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NC ? C HEM . ? A HEM 500 ? 1_555 91.6 ? 5 NA ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NC ? C HEM . ? A HEM 500 ? 1_555 177.7 ? 6 NB ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NC ? C HEM . ? A HEM 500 ? 1_555 82.6 ? 7 O2 ? D OXY . ? A OXY 501 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 ND ? C HEM . ? A HEM 500 ? 1_555 92.0 ? 8 NA ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 ND ? C HEM . ? A HEM 500 ? 1_555 83.2 ? 9 NB ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 ND ? C HEM . ? A HEM 500 ? 1_555 177.8 ? 10 NC ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 ND ? C HEM . ? A HEM 500 ? 1_555 99.1 ? 11 O2 ? D OXY . ? A OXY 501 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NE2 ? A HIS 98 ? A HIS 97 ? 1_555 174.4 ? 12 NA ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NE2 ? A HIS 98 ? A HIS 97 ? 1_555 86.4 ? 13 NB ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NE2 ? A HIS 98 ? A HIS 97 ? 1_555 91.7 ? 14 NC ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NE2 ? A HIS 98 ? A HIS 97 ? 1_555 94.0 ? 15 ND ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 NE2 ? A HIS 98 ? A HIS 97 ? 1_555 86.9 ? 16 O2 ? D OXY . ? A OXY 501 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 O1 ? D OXY . ? A OXY 501 ? 1_555 25.1 ? 17 NA ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 O1 ? D OXY . ? A OXY 501 ? 1_555 105.6 ? 18 NB ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 O1 ? D OXY . ? A OXY 501 ? 1_555 70.3 ? 19 NC ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 O1 ? D OXY . ? A OXY 501 ? 1_555 73.3 ? 20 ND ? C HEM . ? A HEM 500 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 O1 ? D OXY . ? A OXY 501 ? 1_555 111.4 ? 21 NE2 ? A HIS 98 ? A HIS 97 ? 1_555 FE ? C HEM . ? A HEM 500 ? 1_555 O1 ? D OXY . ? A OXY 501 ? 1_555 158.9 ? 22 O2 ? F OXY . ? B OXY 202 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 NA ? E HEM . ? B HEM 201 ? 1_555 90.1 ? 23 O2 ? F OXY . ? B OXY 202 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 NB ? E HEM . ? B HEM 201 ? 1_555 90.5 ? 24 NA ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 NB ? E HEM . ? B HEM 201 ? 1_555 94.7 ? 25 O2 ? F OXY . ? B OXY 202 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 NC ? E HEM . ? B HEM 201 ? 1_555 90.7 ? 26 NA ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 NC ? E HEM . ? B HEM 201 ? 1_555 179.0 ? 27 NB ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 NC ? E HEM . ? B HEM 201 ? 1_555 84.7 ? 28 O2 ? F OXY . ? B OXY 202 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 ND ? E HEM . ? B HEM 201 ? 1_555 90.3 ? 29 NA ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 ND ? E HEM . ? B HEM 201 ? 1_555 84.3 ? 30 NB ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 ND ? E HEM . ? B HEM 201 ? 1_555 178.6 ? 31 NC ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 ND ? E HEM . ? B HEM 201 ? 1_555 96.4 ? 32 O2 ? F OXY . ? B OXY 202 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 NE2 ? B HIS 98 ? B HIS 97 ? 1_555 177.1 ? 33 NA ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 NE2 ? B HIS 98 ? B HIS 97 ? 1_555 87.1 ? 34 NB ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 NE2 ? B HIS 98 ? B HIS 97 ? 1_555 88.7 ? 35 NC ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 NE2 ? B HIS 98 ? B HIS 97 ? 1_555 92.1 ? 36 ND ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 NE2 ? B HIS 98 ? B HIS 97 ? 1_555 90.3 ? 37 O2 ? F OXY . ? B OXY 202 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 O1 ? F OXY . ? B OXY 202 ? 1_555 25.5 ? 38 NA ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 O1 ? F OXY . ? B OXY 202 ? 1_555 107.7 ? 39 NB ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 O1 ? F OXY . ? B OXY 202 ? 1_555 71.2 ? 40 NC ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 O1 ? F OXY . ? B OXY 202 ? 1_555 72.8 ? 41 ND ? E HEM . ? B HEM 201 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 O1 ? F OXY . ? B OXY 202 ? 1_555 110.0 ? 42 NE2 ? B HIS 98 ? B HIS 97 ? 1_555 FE ? E HEM . ? B HEM 201 ? 1_555 O1 ? F OXY . ? B OXY 202 ? 1_555 155.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-09 2 'Structure model' 1 1 2016-12-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Non-polymer description' # _diffrn_reflns.av_R_equivalents 0.069 _diffrn_reflns.number 317299 _diffrn_reflns.diffrn_id 1 # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 4 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 623 ? ? O B HOH 302 ? ? 2.16 2 1 OD1 A ASN 99 ? ? O A HOH 708 ? ? 2.16 3 1 O A HOH 621 ? ? O B HOH 302 ? ? 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH1 A ARG 12 ? ? 128.00 120.30 7.70 0.50 N 2 1 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH2 A ARG 12 ? ? 113.94 120.30 -6.36 0.50 N 3 1 CB A ASP 81 ? ? CG A ASP 81 ? ? OD1 A ASP 81 ? ? 124.51 118.30 6.21 0.90 N 4 1 CB A ASP 81 ? ? CG A ASP 81 ? ? OD2 A ASP 81 ? ? 111.94 118.30 -6.36 0.90 N 5 1 O B ACE 0 ? ? C B ACE 0 ? ? N B THR 1 ? ? 112.85 122.70 -9.85 1.60 Y 6 1 NE B ARG 12 ? ? CZ B ARG 12 ? ? NH2 B ARG 12 ? ? 116.90 120.30 -3.40 0.50 N 7 1 CB B ASP 84 ? B CG B ASP 84 ? B OD1 B ASP 84 ? B 124.08 118.30 5.78 0.90 N 8 1 NE B ARG 100 ? ? CZ B ARG 100 ? ? NH2 B ARG 100 ? ? 115.68 120.30 -4.62 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR B 2 ? ? 58.75 15.14 2 1 ASN B 122 ? ? 70.20 30.36 3 1 VAL B 125 ? ? -58.67 170.84 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 35 ? CE ? A LYS 36 CE 2 1 Y 1 A LYS 35 ? NZ ? A LYS 36 NZ 3 1 Y 1 A ARG 103 ? NE ? A ARG 104 NE 4 1 Y 1 A ARG 103 ? CZ ? A ARG 104 CZ 5 1 Y 1 A ARG 103 ? NH1 ? A ARG 104 NH1 6 1 Y 1 A ARG 103 ? NH2 ? A ARG 104 NH2 7 1 Y 1 A LYS 141 ? CD ? A LYS 142 CD 8 1 Y 1 A LYS 141 ? CE ? A LYS 142 CE 9 1 Y 1 A LYS 141 ? NZ ? A LYS 142 NZ 10 1 Y 1 A LYS 148 ? CD ? A LYS 149 CD 11 1 Y 1 A LYS 148 ? CE ? A LYS 149 CE 12 1 Y 1 A LYS 148 ? NZ ? A LYS 149 NZ 13 1 Y 1 A GLU 149 ? CD ? A GLU 150 CD 14 1 Y 1 A GLU 149 ? OE1 ? A GLU 150 OE1 15 1 Y 1 A GLU 149 ? OE2 ? A GLU 150 OE2 16 1 Y 1 A SER 151 ? OG ? A SER 152 OG 17 1 Y 1 B ARG 103 ? NE ? B ARG 104 NE 18 1 Y 1 B ARG 103 ? CZ ? B ARG 104 CZ 19 1 Y 1 B ARG 103 ? NH1 ? B ARG 104 NH1 20 1 Y 1 B ARG 103 ? NH2 ? B ARG 104 NH2 21 1 Y 1 B LYS 141 ? CD ? B LYS 142 CD 22 1 Y 1 B LYS 141 ? CE ? B LYS 142 CE 23 1 Y 1 B LYS 141 ? NZ ? B LYS 142 NZ 24 1 Y 1 B LYS 148 ? CE ? B LYS 149 CE 25 1 Y 1 B LYS 148 ? NZ ? B LYS 149 NZ 26 1 Y 1 B GLU 149 ? CG ? B GLU 150 CG 27 1 Y 1 B GLU 149 ? CD ? B GLU 150 CD 28 1 Y 1 B GLU 149 ? OE1 ? B GLU 150 OE1 29 1 Y 1 B GLU 149 ? OE2 ? B GLU 150 OE2 30 1 Y 1 B SER 151 ? OG ? B SER 152 OG # _cell_measurement.reflns_used 317299 _cell_measurement.entry_id 3PI2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 'OXYGEN MOLECULE' OXY 4 'FORMIC ACID' FMT 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM 1 500 500 HEM HEM A . D 3 OXY 1 501 501 OXY OXY A . E 2 HEM 1 201 500 HEM HEM B . F 3 OXY 1 202 501 OXY OXY B . G 4 FMT 1 203 1 FMT FMT B . H 5 HOH 1 601 153 HOH HOH A . H 5 HOH 2 602 154 HOH HOH A . H 5 HOH 3 603 8 HOH HOH A . H 5 HOH 4 604 9 HOH HOH A . H 5 HOH 5 605 157 HOH HOH A . H 5 HOH 6 606 11 HOH HOH A . H 5 HOH 7 607 159 HOH HOH A . H 5 HOH 8 608 160 HOH HOH A . H 5 HOH 9 609 12 HOH HOH A . H 5 HOH 10 610 13 HOH HOH A . H 5 HOH 11 611 14 HOH HOH A . H 5 HOH 12 612 164 HOH HOH A . H 5 HOH 13 613 165 HOH HOH A . H 5 HOH 14 614 166 HOH HOH A . H 5 HOH 15 615 15 HOH HOH A . H 5 HOH 16 616 168 HOH HOH A . H 5 HOH 17 617 17 HOH HOH A . H 5 HOH 18 618 18 HOH HOH A . H 5 HOH 19 619 171 HOH HOH A . H 5 HOH 20 620 172 HOH HOH A . H 5 HOH 21 621 173 HOH HOH A . H 5 HOH 22 622 174 HOH HOH A . H 5 HOH 23 623 175 HOH HOH A . H 5 HOH 24 624 19 HOH HOH A . H 5 HOH 25 625 21 HOH HOH A . H 5 HOH 26 626 178 HOH HOH A . H 5 HOH 27 627 25 HOH HOH A . H 5 HOH 28 628 26 HOH HOH A . H 5 HOH 29 629 181 HOH HOH A . H 5 HOH 30 630 27 HOH HOH A . H 5 HOH 31 631 31 HOH HOH A . H 5 HOH 32 632 184 HOH HOH A . H 5 HOH 33 633 32 HOH HOH A . H 5 HOH 34 634 34 HOH HOH A . H 5 HOH 35 635 187 HOH HOH A . H 5 HOH 36 636 36 HOH HOH A . H 5 HOH 37 637 189 HOH HOH A . H 5 HOH 38 638 190 HOH HOH A . H 5 HOH 39 639 37 HOH HOH A . H 5 HOH 40 640 192 HOH HOH A . H 5 HOH 41 641 193 HOH HOH A . H 5 HOH 42 642 39 HOH HOH A . H 5 HOH 43 643 40 HOH HOH A . H 5 HOH 44 644 196 HOH HOH A . H 5 HOH 45 645 197 HOH HOH A . H 5 HOH 46 646 198 HOH HOH A . H 5 HOH 47 647 199 HOH HOH A . H 5 HOH 48 648 200 HOH HOH A . H 5 HOH 49 649 43 HOH HOH A . H 5 HOH 50 650 46 HOH HOH A . H 5 HOH 51 651 203 HOH HOH A . H 5 HOH 52 652 47 HOH HOH A . H 5 HOH 53 653 205 HOH HOH A . H 5 HOH 54 654 206 HOH HOH A . H 5 HOH 55 655 207 HOH HOH A . H 5 HOH 56 656 208 HOH HOH A . H 5 HOH 57 657 51 HOH HOH A . H 5 HOH 58 658 210 HOH HOH A . H 5 HOH 59 659 211 HOH HOH A . H 5 HOH 60 660 52 HOH HOH A . H 5 HOH 61 661 213 HOH HOH A . H 5 HOH 62 662 214 HOH HOH A . H 5 HOH 63 663 53 HOH HOH A . H 5 HOH 64 664 216 HOH HOH A . H 5 HOH 65 665 217 HOH HOH A . H 5 HOH 66 666 218 HOH HOH A . H 5 HOH 67 667 219 HOH HOH A . H 5 HOH 68 668 220 HOH HOH A . H 5 HOH 69 669 54 HOH HOH A . H 5 HOH 70 670 222 HOH HOH A . H 5 HOH 71 671 223 HOH HOH A . H 5 HOH 72 672 55 HOH HOH A . H 5 HOH 73 673 56 HOH HOH A . H 5 HOH 74 674 226 HOH HOH A . H 5 HOH 75 675 227 HOH HOH A . H 5 HOH 76 676 59 HOH HOH A . H 5 HOH 77 677 60 HOH HOH A . H 5 HOH 78 678 66 HOH HOH A . H 5 HOH 79 679 231 HOH HOH A . H 5 HOH 80 680 232 HOH HOH A . H 5 HOH 81 681 67 HOH HOH A . H 5 HOH 82 682 68 HOH HOH A . H 5 HOH 83 683 69 HOH HOH A . H 5 HOH 84 684 72 HOH HOH A . H 5 HOH 85 685 237 HOH HOH A . H 5 HOH 86 686 238 HOH HOH A . H 5 HOH 87 687 239 HOH HOH A . H 5 HOH 88 688 73 HOH HOH A . H 5 HOH 89 689 75 HOH HOH A . H 5 HOH 90 690 76 HOH HOH A . H 5 HOH 91 691 77 HOH HOH A . H 5 HOH 92 692 244 HOH HOH A . H 5 HOH 93 693 78 HOH HOH A . H 5 HOH 94 694 79 HOH HOH A . H 5 HOH 95 695 81 HOH HOH A . H 5 HOH 96 696 248 HOH HOH A . H 5 HOH 97 697 249 HOH HOH A . H 5 HOH 98 698 250 HOH HOH A . H 5 HOH 99 699 251 HOH HOH A . H 5 HOH 100 700 252 HOH HOH A . H 5 HOH 101 701 253 HOH HOH A . H 5 HOH 102 702 82 HOH HOH A . H 5 HOH 103 703 255 HOH HOH A . H 5 HOH 104 704 256 HOH HOH A . H 5 HOH 105 705 83 HOH HOH A . H 5 HOH 106 706 86 HOH HOH A . H 5 HOH 107 707 87 HOH HOH A . H 5 HOH 108 708 90 HOH HOH A . H 5 HOH 109 709 261 HOH HOH A . H 5 HOH 110 710 91 HOH HOH A . H 5 HOH 111 711 94 HOH HOH A . H 5 HOH 112 712 95 HOH HOH A . H 5 HOH 113 713 98 HOH HOH A . H 5 HOH 114 714 266 HOH HOH A . H 5 HOH 115 715 267 HOH HOH A . H 5 HOH 116 716 101 HOH HOH A . H 5 HOH 117 717 102 HOH HOH A . H 5 HOH 118 718 103 HOH HOH A . H 5 HOH 119 719 105 HOH HOH A . H 5 HOH 120 720 108 HOH HOH A . H 5 HOH 121 721 109 HOH HOH A . H 5 HOH 122 722 114 HOH HOH A . H 5 HOH 123 723 118 HOH HOH A . H 5 HOH 124 724 122 HOH HOH A . H 5 HOH 125 725 123 HOH HOH A . H 5 HOH 126 726 127 HOH HOH A . H 5 HOH 127 727 128 HOH HOH A . H 5 HOH 128 728 131 HOH HOH A . H 5 HOH 129 729 132 HOH HOH A . H 5 HOH 130 730 133 HOH HOH A . H 5 HOH 131 731 134 HOH HOH A . H 5 HOH 132 732 135 HOH HOH A . H 5 HOH 133 733 136 HOH HOH A . H 5 HOH 134 734 137 HOH HOH A . H 5 HOH 135 735 138 HOH HOH A . H 5 HOH 136 736 142 HOH HOH A . H 5 HOH 137 737 146 HOH HOH A . H 5 HOH 138 738 148 HOH HOH A . H 5 HOH 139 739 149 HOH HOH A . H 5 HOH 140 740 2 HOH HOH A . I 5 HOH 1 301 1 HOH HOH B . I 5 HOH 2 302 3 HOH HOH B . I 5 HOH 3 303 155 HOH HOH B . I 5 HOH 4 304 156 HOH HOH B . I 5 HOH 5 305 4 HOH HOH B . I 5 HOH 6 306 158 HOH HOH B . I 5 HOH 7 307 5 HOH HOH B . I 5 HOH 8 308 6 HOH HOH B . I 5 HOH 9 309 161 HOH HOH B . I 5 HOH 10 310 162 HOH HOH B . I 5 HOH 11 311 163 HOH HOH B . I 5 HOH 12 312 7 HOH HOH B . I 5 HOH 13 313 10 HOH HOH B . I 5 HOH 14 314 16 HOH HOH B . I 5 HOH 15 315 167 HOH HOH B . I 5 HOH 16 316 20 HOH HOH B . I 5 HOH 17 317 169 HOH HOH B . I 5 HOH 18 318 170 HOH HOH B . I 5 HOH 19 319 22 HOH HOH B . I 5 HOH 20 320 23 HOH HOH B . I 5 HOH 21 321 24 HOH HOH B . I 5 HOH 22 322 28 HOH HOH B . I 5 HOH 23 323 29 HOH HOH B . I 5 HOH 24 324 176 HOH HOH B . I 5 HOH 25 325 177 HOH HOH B . I 5 HOH 26 326 30 HOH HOH B . I 5 HOH 27 327 179 HOH HOH B . I 5 HOH 28 328 180 HOH HOH B . I 5 HOH 29 329 33 HOH HOH B . I 5 HOH 30 330 182 HOH HOH B . I 5 HOH 31 331 183 HOH HOH B . I 5 HOH 32 332 35 HOH HOH B . I 5 HOH 33 333 185 HOH HOH B . I 5 HOH 34 334 186 HOH HOH B . I 5 HOH 35 335 38 HOH HOH B . I 5 HOH 36 336 188 HOH HOH B . I 5 HOH 37 337 41 HOH HOH B . I 5 HOH 38 338 42 HOH HOH B . I 5 HOH 39 339 191 HOH HOH B . I 5 HOH 40 340 44 HOH HOH B . I 5 HOH 41 341 45 HOH HOH B . I 5 HOH 42 342 194 HOH HOH B . I 5 HOH 43 343 195 HOH HOH B . I 5 HOH 44 344 48 HOH HOH B . I 5 HOH 45 345 49 HOH HOH B . I 5 HOH 46 346 50 HOH HOH B . I 5 HOH 47 347 57 HOH HOH B . I 5 HOH 48 348 58 HOH HOH B . I 5 HOH 49 349 201 HOH HOH B . I 5 HOH 50 350 202 HOH HOH B . I 5 HOH 51 351 61 HOH HOH B . I 5 HOH 52 352 204 HOH HOH B . I 5 HOH 53 353 62 HOH HOH B . I 5 HOH 54 354 63 HOH HOH B . I 5 HOH 55 355 64 HOH HOH B . I 5 HOH 56 356 65 HOH HOH B . I 5 HOH 57 357 209 HOH HOH B . I 5 HOH 58 358 70 HOH HOH B . I 5 HOH 59 359 71 HOH HOH B . I 5 HOH 60 360 212 HOH HOH B . I 5 HOH 61 361 74 HOH HOH B . I 5 HOH 62 362 80 HOH HOH B . I 5 HOH 63 363 215 HOH HOH B . I 5 HOH 64 364 84 HOH HOH B . I 5 HOH 65 365 85 HOH HOH B . I 5 HOH 66 366 88 HOH HOH B . I 5 HOH 67 367 89 HOH HOH B . I 5 HOH 68 368 92 HOH HOH B . I 5 HOH 69 369 221 HOH HOH B . I 5 HOH 70 370 93 HOH HOH B . I 5 HOH 71 371 96 HOH HOH B . I 5 HOH 72 372 224 HOH HOH B . I 5 HOH 73 373 225 HOH HOH B . I 5 HOH 74 374 97 HOH HOH B . I 5 HOH 75 375 99 HOH HOH B . I 5 HOH 76 376 228 HOH HOH B . I 5 HOH 77 377 229 HOH HOH B . I 5 HOH 78 378 230 HOH HOH B . I 5 HOH 79 379 100 HOH HOH B . I 5 HOH 80 380 104 HOH HOH B . I 5 HOH 81 381 233 HOH HOH B . I 5 HOH 82 382 234 HOH HOH B . I 5 HOH 83 383 235 HOH HOH B . I 5 HOH 84 384 236 HOH HOH B . I 5 HOH 85 385 106 HOH HOH B . I 5 HOH 86 386 107 HOH HOH B . I 5 HOH 87 387 110 HOH HOH B . I 5 HOH 88 388 240 HOH HOH B . I 5 HOH 89 389 241 HOH HOH B . I 5 HOH 90 390 242 HOH HOH B . I 5 HOH 91 391 243 HOH HOH B . I 5 HOH 92 392 111 HOH HOH B . I 5 HOH 93 393 245 HOH HOH B . I 5 HOH 94 394 246 HOH HOH B . I 5 HOH 95 395 247 HOH HOH B . I 5 HOH 96 396 112 HOH HOH B . I 5 HOH 97 397 113 HOH HOH B . I 5 HOH 98 398 115 HOH HOH B . I 5 HOH 99 399 116 HOH HOH B . I 5 HOH 100 400 117 HOH HOH B . I 5 HOH 101 401 119 HOH HOH B . I 5 HOH 102 402 254 HOH HOH B . I 5 HOH 103 403 120 HOH HOH B . I 5 HOH 104 404 121 HOH HOH B . I 5 HOH 105 405 257 HOH HOH B . I 5 HOH 106 406 258 HOH HOH B . I 5 HOH 107 407 259 HOH HOH B . I 5 HOH 108 408 260 HOH HOH B . I 5 HOH 109 409 124 HOH HOH B . I 5 HOH 110 410 262 HOH HOH B . I 5 HOH 111 411 263 HOH HOH B . I 5 HOH 112 412 264 HOH HOH B . I 5 HOH 113 413 265 HOH HOH B . I 5 HOH 114 414 125 HOH HOH B . I 5 HOH 115 415 126 HOH HOH B . I 5 HOH 116 416 268 HOH HOH B . I 5 HOH 117 417 129 HOH HOH B . I 5 HOH 118 418 130 HOH HOH B . I 5 HOH 119 419 139 HOH HOH B . I 5 HOH 120 420 140 HOH HOH B . I 5 HOH 121 421 141 HOH HOH B . I 5 HOH 122 422 143 HOH HOH B . I 5 HOH 123 423 144 HOH HOH B . I 5 HOH 124 424 145 HOH HOH B . I 5 HOH 125 425 147 HOH HOH B . I 5 HOH 126 426 150 HOH HOH B . I 5 HOH 127 427 151 HOH HOH B . I 5 HOH 128 428 152 HOH HOH B . #