HEADER TRANSFERASE 09-NOV-10 3PJ9 TITLE CRYSTAL STRUCTURE OF A NUCLEOSIDE DIPHOSPHATE KINASE FROM TITLE 2 CAMPYLOBACTER JEJUNI COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NDK, NDP KINASE, NUCLEOSIDE-2-P KINASE; COMPND 5 EC: 2.7.4.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI SUBSP. JEJUNI; SOURCE 3 ORGANISM_TAXID: 192222; SOURCE 4 STRAIN: NCTC 11168; SOURCE 5 GENE: CJ0332C, NDK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, NUCLEOSIDE DIPHOSPHATE KINASE, NDK, CAMPYLOBACTER KEYWDS 3 JEJUNI SUBSP. JEJUNI NCTC 11168, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,Z.WAWRZAK,O.ONOPRIYENKO,A.EDWARDS,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 4 06-SEP-23 3PJ9 1 REMARK SEQADV REVDAT 3 27-JUN-18 3PJ9 1 SSBOND REVDAT 2 08-NOV-17 3PJ9 1 REMARK REVDAT 1 24-NOV-10 3PJ9 0 JRNL AUTH E.V.FILIPPOVA,Z.WAWRZAK,O.ONOPRIYENKO,A.EDWARDS,A.SAVCHENKO, JRNL AUTH 2 W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF A NUCLEOSIDE DIPHOSPHATE KINASE FROM JRNL TITL 2 CAMPYLOBACTER JEJUNI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 46976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2511 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3233 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.2070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4255 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.71000 REMARK 3 B22 (A**2) : 0.94000 REMARK 3 B33 (A**2) : -1.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.143 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4413 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5929 ; 1.484 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 554 ; 6.184 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;35.515 ;25.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 845 ;14.420 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.856 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 656 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3217 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2755 ; 0.854 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4431 ; 1.557 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1658 ; 2.684 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1498 ; 4.410 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7733 55.8867 73.4847 REMARK 3 T TENSOR REMARK 3 T11: 0.1929 T22: 0.0911 REMARK 3 T33: 0.2463 T12: -0.0219 REMARK 3 T13: 0.0839 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 2.8738 L22: 2.6778 REMARK 3 L33: 2.3891 L12: -1.5467 REMARK 3 L13: -0.3240 L23: 0.1340 REMARK 3 S TENSOR REMARK 3 S11: -0.1980 S12: -0.0579 S13: -0.5515 REMARK 3 S21: 0.2401 S22: 0.0458 S23: 0.5105 REMARK 3 S31: 0.2891 S32: -0.1948 S33: 0.1522 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7366 84.1947 83.4572 REMARK 3 T TENSOR REMARK 3 T11: 0.1679 T22: 0.1457 REMARK 3 T33: 0.0990 T12: -0.0072 REMARK 3 T13: 0.0122 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 1.7721 L22: 1.7516 REMARK 3 L33: 2.3681 L12: -0.3026 REMARK 3 L13: 0.2434 L23: -0.2623 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: 0.1660 S13: -0.0051 REMARK 3 S21: -0.1501 S22: -0.0637 S23: -0.0187 REMARK 3 S31: 0.0550 S32: -0.0915 S33: 0.1373 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 137 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7884 88.0316 52.3988 REMARK 3 T TENSOR REMARK 3 T11: 0.1492 T22: 0.2227 REMARK 3 T33: 0.1047 T12: 0.0042 REMARK 3 T13: -0.0384 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 1.1562 L22: 1.6045 REMARK 3 L33: 3.3918 L12: -0.1000 REMARK 3 L13: 0.4194 L23: -0.7600 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.1996 S13: -0.0087 REMARK 3 S21: 0.1717 S22: -0.1021 S23: -0.1184 REMARK 3 S31: -0.0739 S32: 0.2742 S33: 0.1329 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -1 D 137 REMARK 3 ORIGIN FOR THE GROUP (A): 52.5898 71.5795 61.6995 REMARK 3 T TENSOR REMARK 3 T11: 0.1003 T22: 0.2211 REMARK 3 T33: 0.2203 T12: 0.0091 REMARK 3 T13: 0.0310 T23: 0.1205 REMARK 3 L TENSOR REMARK 3 L11: 3.3653 L22: 2.5215 REMARK 3 L33: 3.1502 L12: -1.1505 REMARK 3 L13: 0.3983 L23: -0.2229 REMARK 3 S TENSOR REMARK 3 S11: 0.0969 S12: 0.4647 S13: 0.5536 REMARK 3 S21: -0.1262 S22: -0.2554 S23: -0.4065 REMARK 3 S31: -0.1268 S32: 0.4848 S33: 0.1585 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 D 140 REMARK 3 ORIGIN FOR THE GROUP (A): 36.2871 70.7990 67.5935 REMARK 3 T TENSOR REMARK 3 T11: 0.0633 T22: 0.0555 REMARK 3 T33: 0.0275 T12: -0.0572 REMARK 3 T13: -0.0276 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.2053 L22: 1.7052 REMARK 3 L33: 1.5362 L12: -1.1497 REMARK 3 L13: -0.3345 L23: -0.4382 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: -0.0063 S13: -0.0374 REMARK 3 S21: -0.0896 S22: 0.1134 S23: 0.1386 REMARK 3 S31: 0.0445 S32: -0.0012 S33: -0.0751 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PJ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49704 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MOLECULAR REPLACEMENT REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP, PHENIX, CCP4 REMARK 200 STARTING MODEL: 2NCK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M NH4 SULFATE, 5% ISOPROPANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.83600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.46250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.07100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.46250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.83600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.07100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -199.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 85.67200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -44.07100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 166.38750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A -2 REMARK 465 SER A -1 REMARK 465 ALA A 0 REMARK 465 ASN B -2 REMARK 465 SER B -1 REMARK 465 ALA B 0 REMARK 465 ASN C -2 REMARK 465 SER C -1 REMARK 465 ALA C 0 REMARK 465 GLU C 54 REMARK 465 ASN D -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 113 -42.50 74.65 REMARK 500 ASN A 134 14.59 -143.01 REMARK 500 MET B 35 139.00 -170.31 REMARK 500 ALA B 113 -50.33 73.53 REMARK 500 ALA C 113 -38.62 73.07 REMARK 500 MET D 35 136.06 -170.98 REMARK 500 ALA D 111 79.09 -114.58 REMARK 500 ALA D 113 -48.73 71.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 140 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP90542 RELATED DB: TARGETDB DBREF 3PJ9 A 1 137 UNP Q9PIG7 NDK_CAMJE 1 137 DBREF 3PJ9 B 1 137 UNP Q9PIG7 NDK_CAMJE 1 137 DBREF 3PJ9 C 1 137 UNP Q9PIG7 NDK_CAMJE 1 137 DBREF 3PJ9 D 1 137 UNP Q9PIG7 NDK_CAMJE 1 137 SEQADV 3PJ9 ASN A -2 UNP Q9PIG7 EXPRESSION TAG SEQADV 3PJ9 SER A -1 UNP Q9PIG7 EXPRESSION TAG SEQADV 3PJ9 ALA A 0 UNP Q9PIG7 EXPRESSION TAG SEQADV 3PJ9 ASN B -2 UNP Q9PIG7 EXPRESSION TAG SEQADV 3PJ9 SER B -1 UNP Q9PIG7 EXPRESSION TAG SEQADV 3PJ9 ALA B 0 UNP Q9PIG7 EXPRESSION TAG SEQADV 3PJ9 ASN C -2 UNP Q9PIG7 EXPRESSION TAG SEQADV 3PJ9 SER C -1 UNP Q9PIG7 EXPRESSION TAG SEQADV 3PJ9 ALA C 0 UNP Q9PIG7 EXPRESSION TAG SEQADV 3PJ9 ASN D -2 UNP Q9PIG7 EXPRESSION TAG SEQADV 3PJ9 SER D -1 UNP Q9PIG7 EXPRESSION TAG SEQADV 3PJ9 ALA D 0 UNP Q9PIG7 EXPRESSION TAG SEQRES 1 A 140 ASN SER ALA MET GLU LYS THR LEU SER ILE ILE LYS PRO SEQRES 2 A 140 ASP ALA VAL LYS LYS GLY VAL ILE GLY LYS ILE LEU ASP SEQRES 3 A 140 ARG PHE GLU SER ASN GLY LEU ARG ILE ALA ALA MET LYS SEQRES 4 A 140 LYS VAL GLN LEU SER LYS GLU GLN ALA GLU ASN PHE TYR SEQRES 5 A 140 ALA VAL HIS LYS GLU ARG PRO PHE PHE LYS ASP LEU VAL SEQRES 6 A 140 GLU PHE MET ILE SER GLY PRO VAL VAL VAL SER ILE LEU SEQRES 7 A 140 GLU GLY GLU GLY ALA VAL LEU LYS ASN ARG ASP LEU MET SEQRES 8 A 140 GLY ALA THR ASN PRO LYS GLU ALA LYS ALA GLY THR ILE SEQRES 9 A 140 ARG ALA ASP PHE ALA GLU SER ILE ASP ALA ASN ALA VAL SEQRES 10 A 140 HIS GLY SER ASP SER LEU GLU ASN ALA LYS ILE GLU ILE SEQRES 11 A 140 GLU PHE PHE PHE LYS PRO ASN GLU ILE CYS SEQRES 1 B 140 ASN SER ALA MET GLU LYS THR LEU SER ILE ILE LYS PRO SEQRES 2 B 140 ASP ALA VAL LYS LYS GLY VAL ILE GLY LYS ILE LEU ASP SEQRES 3 B 140 ARG PHE GLU SER ASN GLY LEU ARG ILE ALA ALA MET LYS SEQRES 4 B 140 LYS VAL GLN LEU SER LYS GLU GLN ALA GLU ASN PHE TYR SEQRES 5 B 140 ALA VAL HIS LYS GLU ARG PRO PHE PHE LYS ASP LEU VAL SEQRES 6 B 140 GLU PHE MET ILE SER GLY PRO VAL VAL VAL SER ILE LEU SEQRES 7 B 140 GLU GLY GLU GLY ALA VAL LEU LYS ASN ARG ASP LEU MET SEQRES 8 B 140 GLY ALA THR ASN PRO LYS GLU ALA LYS ALA GLY THR ILE SEQRES 9 B 140 ARG ALA ASP PHE ALA GLU SER ILE ASP ALA ASN ALA VAL SEQRES 10 B 140 HIS GLY SER ASP SER LEU GLU ASN ALA LYS ILE GLU ILE SEQRES 11 B 140 GLU PHE PHE PHE LYS PRO ASN GLU ILE CYS SEQRES 1 C 140 ASN SER ALA MET GLU LYS THR LEU SER ILE ILE LYS PRO SEQRES 2 C 140 ASP ALA VAL LYS LYS GLY VAL ILE GLY LYS ILE LEU ASP SEQRES 3 C 140 ARG PHE GLU SER ASN GLY LEU ARG ILE ALA ALA MET LYS SEQRES 4 C 140 LYS VAL GLN LEU SER LYS GLU GLN ALA GLU ASN PHE TYR SEQRES 5 C 140 ALA VAL HIS LYS GLU ARG PRO PHE PHE LYS ASP LEU VAL SEQRES 6 C 140 GLU PHE MET ILE SER GLY PRO VAL VAL VAL SER ILE LEU SEQRES 7 C 140 GLU GLY GLU GLY ALA VAL LEU LYS ASN ARG ASP LEU MET SEQRES 8 C 140 GLY ALA THR ASN PRO LYS GLU ALA LYS ALA GLY THR ILE SEQRES 9 C 140 ARG ALA ASP PHE ALA GLU SER ILE ASP ALA ASN ALA VAL SEQRES 10 C 140 HIS GLY SER ASP SER LEU GLU ASN ALA LYS ILE GLU ILE SEQRES 11 C 140 GLU PHE PHE PHE LYS PRO ASN GLU ILE CYS SEQRES 1 D 140 ASN SER ALA MET GLU LYS THR LEU SER ILE ILE LYS PRO SEQRES 2 D 140 ASP ALA VAL LYS LYS GLY VAL ILE GLY LYS ILE LEU ASP SEQRES 3 D 140 ARG PHE GLU SER ASN GLY LEU ARG ILE ALA ALA MET LYS SEQRES 4 D 140 LYS VAL GLN LEU SER LYS GLU GLN ALA GLU ASN PHE TYR SEQRES 5 D 140 ALA VAL HIS LYS GLU ARG PRO PHE PHE LYS ASP LEU VAL SEQRES 6 D 140 GLU PHE MET ILE SER GLY PRO VAL VAL VAL SER ILE LEU SEQRES 7 D 140 GLU GLY GLU GLY ALA VAL LEU LYS ASN ARG ASP LEU MET SEQRES 8 D 140 GLY ALA THR ASN PRO LYS GLU ALA LYS ALA GLY THR ILE SEQRES 9 D 140 ARG ALA ASP PHE ALA GLU SER ILE ASP ALA ASN ALA VAL SEQRES 10 D 140 HIS GLY SER ASP SER LEU GLU ASN ALA LYS ILE GLU ILE SEQRES 11 D 140 GLU PHE PHE PHE LYS PRO ASN GLU ILE CYS HET SO4 A 138 5 HET SO4 A 139 5 HET SO4 A 140 5 HET SO4 A 141 5 HET SO4 B 138 5 HET SO4 B 139 5 HET SO4 B 140 5 HET SO4 C 138 5 HET SO4 C 139 5 HET SO4 D 138 5 HET SO4 D 139 5 HET SO4 D 140 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 12(O4 S 2-) FORMUL 17 HOH *328(H2 O) HELIX 1 1 LYS A 9 GLY A 16 1 8 HELIX 2 2 VAL A 17 SER A 27 1 11 HELIX 3 3 SER A 41 TYR A 49 1 9 HELIX 4 4 ALA A 50 LYS A 53 5 4 HELIX 5 5 PHE A 57 ILE A 66 1 10 HELIX 6 6 GLY A 79 GLY A 89 1 11 HELIX 7 7 ASN A 92 ALA A 96 5 5 HELIX 8 8 THR A 100 ALA A 106 1 7 HELIX 9 9 SER A 119 PHE A 131 1 13 HELIX 10 10 LYS B 9 GLY B 16 1 8 HELIX 11 11 VAL B 17 SER B 27 1 11 HELIX 12 12 SER B 41 TYR B 49 1 9 HELIX 13 13 ALA B 50 LYS B 53 5 4 HELIX 14 14 PHE B 57 ILE B 66 1 10 HELIX 15 15 GLY B 79 GLY B 89 1 11 HELIX 16 16 THR B 100 ALA B 106 1 7 HELIX 17 17 SER B 119 PHE B 131 1 13 HELIX 18 18 LYS B 132 ILE B 136 5 5 HELIX 19 19 LYS C 9 GLY C 16 1 8 HELIX 20 20 VAL C 17 SER C 27 1 11 HELIX 21 21 SER C 41 VAL C 51 1 11 HELIX 22 22 PHE C 57 SER C 67 1 11 HELIX 23 23 GLY C 79 GLY C 89 1 11 HELIX 24 24 THR C 100 ALA C 106 1 7 HELIX 25 25 SER C 119 PHE C 131 1 13 HELIX 26 26 LYS D 9 GLY D 16 1 8 HELIX 27 27 VAL D 17 SER D 27 1 11 HELIX 28 28 SER D 41 TYR D 49 1 9 HELIX 29 29 ALA D 50 PRO D 56 5 7 HELIX 30 30 PHE D 57 ILE D 66 1 10 HELIX 31 31 GLY D 79 GLY D 89 1 11 HELIX 32 32 ASN D 92 ALA D 96 5 5 HELIX 33 33 THR D 100 ALA D 106 1 7 HELIX 34 34 SER D 119 PHE D 131 1 13 HELIX 35 35 LYS D 132 ILE D 136 5 5 SHEET 1 A 4 ARG A 31 VAL A 38 0 SHEET 2 A 4 VAL A 70 GLY A 77 -1 O GLU A 76 N ARG A 31 SHEET 3 A 4 GLU A 2 ILE A 8 -1 N ILE A 8 O VAL A 71 SHEET 4 A 4 VAL A 114 GLY A 116 -1 O HIS A 115 N ILE A 7 SHEET 1 B 4 ARG B 31 VAL B 38 0 SHEET 2 B 4 VAL B 70 GLY B 77 -1 O VAL B 70 N VAL B 38 SHEET 3 B 4 GLU B 2 ILE B 8 -1 N ILE B 8 O VAL B 71 SHEET 4 B 4 VAL B 114 GLY B 116 -1 O HIS B 115 N ILE B 7 SHEET 1 C 4 ARG C 31 VAL C 38 0 SHEET 2 C 4 VAL C 70 GLY C 77 -1 O GLU C 76 N ARG C 31 SHEET 3 C 4 GLU C 2 ILE C 8 -1 N ILE C 8 O VAL C 71 SHEET 4 C 4 VAL C 114 GLY C 116 -1 O HIS C 115 N ILE C 7 SHEET 1 D 4 ARG D 31 VAL D 38 0 SHEET 2 D 4 VAL D 70 GLU D 76 -1 O VAL D 70 N VAL D 38 SHEET 3 D 4 LYS D 3 ILE D 8 -1 N ILE D 8 O VAL D 71 SHEET 4 D 4 VAL D 114 GLY D 116 -1 O HIS D 115 N ILE D 7 SSBOND 1 CYS A 137 CYS C 137 1555 3646 2.66 SITE 1 AC1 4 LYS A 9 TYR A 49 HIS A 115 HOH A 324 SITE 1 AC2 7 ALA A 98 ARG B 85 GLY B 89 ALA B 90 SITE 2 AC2 7 ALA B 96 LYS B 97 HOH B 279 SITE 1 AC3 7 ARG B 55 LYS C 9 TYR C 49 HIS C 52 SITE 2 AC3 7 HIS C 115 HOH C 189 HOH C 191 SITE 1 AC4 7 ARG B 55 ARG C 85 MET C 88 THR C 91 SITE 2 AC4 7 ARG C 102 HOH C 189 HOH C 191 SITE 1 AC5 5 LYS D 9 TYR D 49 HIS D 115 HOH D 154 SITE 2 AC5 5 HOH D 229 SITE 1 AC6 4 LYS A 36 VAL A 38 PHE A 130 LYS B 132 SITE 1 AC7 5 ARG B 85 ALA B 90 THR B 91 HOH B 147 SITE 2 AC7 5 HOH B 326 SITE 1 AC8 4 THR A 91 ARG A 102 HOH A 181 HOH A 324 SITE 1 AC9 6 LYS B 9 ARG B 102 ASN B 112 HIS B 115 SITE 2 AC9 6 HOH B 177 HOH B 294 SITE 1 BC1 3 SER D 119 LEU D 120 GLU D 121 SITE 1 BC2 7 LYS A 36 PHE A 130 PHE A 131 LYS A 132 SITE 2 BC2 7 ASN A 134 HOH A 148 HOH A 180 SITE 1 BC3 4 ARG A 31 ALA A 33 LYS D 37 PRO D 69 CRYST1 85.672 88.142 110.925 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011672 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009015 0.00000