HEADER OXIDOREDUCTASE 10-NOV-10 3PJG TITLE CRYSTAL STRUCTURE OF UDP-GLUCOSE DEHYDROGENASE FROM KLEBSIELLA TITLE 2 PNEUMONIAE COMPLEXED WITH PRODUCT UDP-GLUCURONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCOSE 6-DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.22; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 STRAIN: NTUH-K2044; SOURCE 5 GENE: KP1_3701, UGD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ROSSMANN FOLD, DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-Y.CHEN,T.-P.KO,C.-H.LIN,W.-H.CHEN,A.H.-J.WANG REVDAT 3 01-NOV-23 3PJG 1 REMARK SEQADV REVDAT 2 08-NOV-17 3PJG 1 REMARK REVDAT 1 28-SEP-11 3PJG 0 JRNL AUTH Y.Y.CHEN,T.P.KO,C.H.LIN,W.H.CHEN,A.H.WANG JRNL TITL CONFORMATIONAL CHANGE UPON PRODUCT BINDING TO KLEBSIELLA JRNL TITL 2 PNEUMONIAE UDP-GLUCOSE DEHYDROGENASE: A POSSIBLE INHIBITION JRNL TITL 3 MECHANISM FOR THE KEY ENZYME IN POLYMYXIN RESISTANCE. JRNL REF J.STRUCT.BIOL. V. 175 300 2011 JRNL REFN ISSN 1047-8477 JRNL PMID 21536136 JRNL DOI 10.1016/J.JSB.2011.04.010 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 25347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1286 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.34 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2618 REMARK 3 BIN FREE R VALUE : 0.2904 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 119 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 2.059 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062446. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 11 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27652 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.90 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.20 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 3PID REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM CAPS BUFFER (PH 11.0), 6% (W/V) REMARK 280 PEG 8000, 16% (W/V) ETHYLENEGLYCOL, 4MM UDP-GLUCURONIC ACID, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.42633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 124.85267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.42633 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 124.85267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.42633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 124.85267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 62.42633 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 124.85267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1000 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1001 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1002 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 964 REMARK 465 GLY A 965 REMARK 465 SER A 966 REMARK 465 SER A 967 REMARK 465 HIS A 968 REMARK 465 HIS A 969 REMARK 465 HIS A 970 REMARK 465 HIS A 971 REMARK 465 HIS A 972 REMARK 465 HIS A 973 REMARK 465 SER A 974 REMARK 465 SER A 975 REMARK 465 GLY A 976 REMARK 465 LEU A 977 REMARK 465 VAL A 978 REMARK 465 PRO A 979 REMARK 465 ARG A 980 REMARK 465 GLY A 981 REMARK 465 SER A 982 REMARK 465 HIS A 983 REMARK 465 MET A 984 REMARK 465 ALA A 985 REMARK 465 SER A 986 REMARK 465 MET A 987 REMARK 465 THR A 988 REMARK 465 GLY A 989 REMARK 465 GLY A 990 REMARK 465 GLN A 991 REMARK 465 GLN A 992 REMARK 465 MET A 993 REMARK 465 GLY A 994 REMARK 465 ARG A 995 REMARK 465 GLY A 996 REMARK 465 SER A 997 REMARK 465 GLU A 998 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 141 CG GLU A 141 CD 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 367 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 8 58.56 -115.96 REMARK 500 ALA A 20 2.70 -68.08 REMARK 500 ASP A 47 108.35 -174.47 REMARK 500 ASP A 84 173.04 177.01 REMARK 500 ASN A 108 67.78 -154.48 REMARK 500 PRO A 109 7.90 -57.70 REMARK 500 ASP A 134 -9.04 -140.97 REMARK 500 ASN A 135 51.50 -91.49 REMARK 500 TYR A 242 59.05 39.92 REMARK 500 ASN A 243 31.02 -147.40 REMARK 500 ASN A 264 11.62 -142.48 REMARK 500 GLU A 266 -7.02 89.81 REMARK 500 LYS A 295 57.70 37.01 REMARK 500 ARG A 303 128.20 82.95 REMARK 500 ARG A 314 -66.73 -28.19 REMARK 500 ALA A 315 32.72 -87.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 150 0.07 SIDE CHAIN REMARK 500 TYR A 302 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UGA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UGA A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PID RELATED DB: PDB REMARK 900 MODEL FOR MOLECULAR REPLACEMENT REMARK 900 RELATED ID: 1DLI RELATED DB: PDB REMARK 900 STREPTOCOCCUS PYOGENES UDP-GLUCOSE DEHYDROGENASE COMPLEXED WITH REMARK 900 NICOTINAMIDE ADENINE DINUCLEOTIDE AND URIDINE-5'-DIPHOSPHATE- REMARK 900 XYLOPYRANOSE REMARK 900 RELATED ID: 3PHL RELATED DB: PDB DBREF 3PJG A 1 388 UNP C4XAX5 C4XAX5_KLEPN 1 388 SEQADV 3PJG MET A 964 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG GLY A 965 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG SER A 966 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG SER A 967 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG HIS A 968 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG HIS A 969 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG HIS A 970 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG HIS A 971 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG HIS A 972 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG HIS A 973 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG SER A 974 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG SER A 975 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG GLY A 976 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG LEU A 977 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG VAL A 978 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG PRO A 979 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG ARG A 980 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG GLY A 981 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG SER A 982 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG HIS A 983 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG MET A 984 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG ALA A 985 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG SER A 986 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG MET A 987 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG THR A 988 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG GLY A 989 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG GLY A 990 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG GLN A 991 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG GLN A 992 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG MET A 993 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG GLY A 994 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG ARG A 995 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG GLY A 996 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG SER A 997 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG GLU A 998 UNP C4XAX5 EXPRESSION TAG SEQADV 3PJG PHE A 999 UNP C4XAX5 EXPRESSION TAG SEQRES 1 A 424 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 424 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 424 GLY GLN GLN MET GLY ARG GLY SER GLU PHE MET LYS ILE SEQRES 4 A 424 THR ILE SER GLY THR GLY TYR VAL GLY LEU SER ASN GLY SEQRES 5 A 424 VAL LEU ILE ALA GLN ASN HIS GLU VAL VAL ALA LEU ASP SEQRES 6 A 424 ILE VAL GLN ALA LYS VAL ASP MET LEU ASN GLN LYS ILE SEQRES 7 A 424 SER PRO ILE VAL ASP LYS GLU ILE GLN GLU TYR LEU ALA SEQRES 8 A 424 GLU LYS PRO LEU ASN PHE ARG ALA THR THR ASP LYS HIS SEQRES 9 A 424 ASP ALA TYR ARG ASN ALA ASP TYR VAL ILE ILE ALA THR SEQRES 10 A 424 PRO THR ASP TYR ASP PRO LYS THR ASN TYR PHE ASN THR SEQRES 11 A 424 SER THR VAL GLU ALA VAL ILE ARG ASP VAL THR GLU ILE SEQRES 12 A 424 ASN PRO ASN ALA VAL MET ILE ILE LYS SER THR ILE PRO SEQRES 13 A 424 VAL GLY PHE THR ARG ASP ILE LYS GLU ARG LEU GLY ILE SEQRES 14 A 424 ASP ASN VAL ILE PHE SER PRO GLU PHE LEU ARG GLU GLY SEQRES 15 A 424 ARG ALA LEU TYR ASP ASN LEU HIS PRO SER ARG ILE VAL SEQRES 16 A 424 ILE GLY GLU ARG SER ALA ARG ALA GLU ARG PHE ALA ASP SEQRES 17 A 424 LEU LEU LYS GLU GLY ALA ILE LYS GLN ASP ILE PRO THR SEQRES 18 A 424 LEU PHE THR ASP SER THR GLU ALA GLU ALA ILE LYS LEU SEQRES 19 A 424 PHE ALA ASN THR TYR LEU ALA LEU ARG VAL ALA TYR PHE SEQRES 20 A 424 ASN GLU LEU ASP SER TYR ALA GLU SER GLN GLY LEU ASN SEQRES 21 A 424 SER LYS GLN ILE ILE GLU GLY VAL CYS LEU ASP PRO ARG SEQRES 22 A 424 ILE GLY ASN HIS TYR ASN ASN PRO SER PHE GLY TYR GLY SEQRES 23 A 424 GLY TYR CYS LEU PRO LYS ASP THR LYS GLN LEU LEU ALA SEQRES 24 A 424 ASN TYR GLU SER VAL PRO ASN ASN ILE ILE ALA ALA ILE SEQRES 25 A 424 VAL ASP ALA ASN ARG THR ARG LYS ASP PHE ILE ALA ASP SEQRES 26 A 424 SER ILE LEU ALA ARG LYS PRO LYS VAL VAL GLY VAL TYR SEQRES 27 A 424 ARG LEU ILE MET LYS SER GLY SER ASP ASN PHE ARG ALA SEQRES 28 A 424 SER SER ILE GLN GLY ILE MET LYS ARG ILE LYS ALA LYS SEQRES 29 A 424 GLY ILE PRO VAL ILE ILE TYR GLU PRO VAL MET GLN GLU SEQRES 30 A 424 ASP GLU PHE PHE ASN SER ARG VAL VAL ARG ASP LEU ASN SEQRES 31 A 424 ALA PHE LYS GLN GLU ALA ASP VAL ILE ILE SER ASN ARG SEQRES 32 A 424 MET ALA GLU GLU LEU ALA ASP VAL ALA ASP LYS VAL TYR SEQRES 33 A 424 THR ARG ASP LEU PHE GLY ASN ASP HET CXS A 900 14 HET UGA A 901 37 HET UGA A 902 37 HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID HETNAM UGA URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID HETSYN UGA UDP-GLUCURONIC ACID FORMUL 2 CXS C9 H19 N O3 S FORMUL 3 UGA 2(C15 H22 N2 O18 P2) FORMUL 5 HOH *158(H2 O) HELIX 1 1 GLY A 9 ALA A 20 1 12 HELIX 2 2 VAL A 31 GLN A 40 1 10 HELIX 3 3 ASP A 47 LYS A 57 1 11 HELIX 4 4 ASP A 66 ARG A 72 1 7 HELIX 5 5 THR A 94 ASN A 108 1 15 HELIX 6 6 GLY A 122 GLY A 132 1 11 HELIX 7 7 ARG A 147 HIS A 154 1 8 HELIX 8 8 SER A 164 ALA A 178 1 15 HELIX 9 9 ASP A 189 GLY A 222 1 34 HELIX 10 10 ASN A 224 LEU A 234 1 11 HELIX 11 11 ASP A 257 ALA A 263 1 7 HELIX 12 12 PRO A 269 ALA A 293 1 25 HELIX 13 13 SER A 317 LYS A 328 1 12 HELIX 14 14 ASP A 352 ALA A 360 1 9 HELIX 15 15 ALA A 369 ASP A 377 5 9 SHEET 1 A 6 PHE A 61 THR A 64 0 SHEET 2 A 6 GLU A 24 LEU A 28 1 N ALA A 27 O ARG A 62 SHEET 3 A 6 LYS A 2 SER A 6 1 N ILE A 5 O LEU A 28 SHEET 4 A 6 TYR A 76 ILE A 79 1 O ILE A 78 N SER A 6 SHEET 5 A 6 VAL A 112 ILE A 115 1 O ILE A 114 N ILE A 79 SHEET 6 A 6 VAL A 136 PHE A 138 1 O ILE A 137 N ILE A 115 SHEET 1 B 2 ASP A 84 TYR A 85 0 SHEET 2 B 2 PHE A 92 ASN A 93 -1 O ASN A 93 N ASP A 84 SHEET 1 C 2 ILE A 158 ILE A 160 0 SHEET 2 C 2 THR A 185 PHE A 187 1 O LEU A 186 N ILE A 158 SHEET 1 D 6 GLU A 343 PHE A 344 0 SHEET 2 D 6 SER A 347 VAL A 349 -1 O SER A 347 N PHE A 344 SHEET 3 D 6 VAL A 332 TYR A 335 1 N ILE A 334 O ARG A 348 SHEET 4 D 6 VAL A 299 TYR A 302 1 N VAL A 301 O ILE A 333 SHEET 5 D 6 VAL A 362 ILE A 364 1 O VAL A 362 N GLY A 300 SHEET 6 D 6 VAL A 379 TYR A 380 1 O TYR A 380 N ILE A 363 SITE 1 AC1 7 ASP A 36 ASP A 311 ASN A 312 PHE A 313 SITE 2 AC1 7 ARG A 314 VAL A 338 HOH A1030 SITE 1 AC2 21 GLU A 141 PHE A 142 LEU A 143 ARG A 144 SITE 2 AC2 21 GLU A 145 LYS A 197 ASN A 201 VAL A 208 SITE 3 AC2 21 ARG A 237 TYR A 242 ASN A 243 ASN A 244 SITE 4 AC2 21 SER A 246 TYR A 249 GLY A 250 TYR A 252 SITE 5 AC2 21 MET A 306 ASP A 388 HOH A1043 HOH A1101 SITE 6 AC2 21 HOH A1155 SITE 1 AC3 16 LYS A 256 ASP A 257 LYS A 259 LYS A 284 SITE 2 AC3 16 GLN A 319 GLY A 320 MET A 322 LYS A 323 SITE 3 AC3 16 ARG A 324 LYS A 326 ALA A 327 LYS A 328 SITE 4 AC3 16 PHE A 345 HOH A1054 HOH A1071 HOH A1140 CRYST1 133.403 133.403 187.279 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007496 0.004328 0.000000 0.00000 SCALE2 0.000000 0.008656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005340 0.00000