HEADER TRANSCRIPTION REGULATOR 10-NOV-10 3PJY TITLE CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTION REGULATOR (R01717) FROM TITLE 2 SINORHIZOBIUM MELILOTI 1021 AT 1.55 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL SIGNAL PEPTIDE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 29-163; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_TAXID: 382; SOURCE 4 GENE: R01717, SMC00288; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS DUF192 FAMILY PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 01-FEB-23 3PJY 1 REMARK SEQADV LINK REVDAT 2 20-JUL-11 3PJY 1 KEYWDS REVDAT 1 22-DEC-10 3PJY 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTION REGULATOR JRNL TITL 2 (R01717) FROM SINORHIZOBIUM MELILOTI 1021 AT 1.55 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 45642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2298 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3143 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.381 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2294 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1571 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3136 ; 1.600 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3823 ; 0.909 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 6.972 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;36.631 ;22.981 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 400 ;11.586 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;12.479 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2652 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 470 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1434 ; 1.676 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 576 ; 0.491 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2339 ; 2.672 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 860 ; 4.354 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 797 ; 6.794 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9385 21.2442 33.9390 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.0516 REMARK 3 T33: 0.0438 T12: -0.0170 REMARK 3 T13: 0.0110 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 0.9636 L22: 1.4000 REMARK 3 L33: 1.0002 L12: 0.0897 REMARK 3 L13: 0.1409 L23: -0.4766 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: -0.0601 S13: -0.0343 REMARK 3 S21: 0.0866 S22: 0.0084 S23: 0.0587 REMARK 3 S31: 0.0230 S32: -0.0676 S33: 0.0126 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 157 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3249 7.9791 59.2087 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: 0.0033 REMARK 3 T33: 0.0251 T12: 0.0028 REMARK 3 T13: 0.0256 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.5880 L22: 0.9807 REMARK 3 L33: 0.8434 L12: -0.3820 REMARK 3 L13: -0.3052 L23: 0.0502 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: -0.0059 S13: 0.0335 REMARK 3 S21: 0.0944 S22: 0.0117 S23: 0.0352 REMARK 3 S31: -0.0386 S32: -0.0198 S33: -0.0418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 6. SULPHATE AND CHLORIDE IONS FROM THE REMARK 3 CRYSTALLIZATION AND PROTEIN BUFFERS ARE MODELED IN THE STRUCTURE. REMARK 4 REMARK 4 3PJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97980,0.97961 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 SI(111) REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45713 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 29.208 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.797 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20M (NH4)2SO4, 10.00% GLYCEROL, REMARK 280 20.00% PEG-300, 0.1M PHOSPHATE CITRATE PH 4.2, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.96900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.71750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.71750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.45350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.71750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.71750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.48450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.71750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.71750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 115.45350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.71750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.71750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.48450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.96900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 157 REMARK 465 ALA A 158 REMARK 465 THR A 159 REMARK 465 LYS A 160 REMARK 465 ARG A 161 REMARK 465 ALA A 162 REMARK 465 ASN A 163 REMARK 465 ALA B 158 REMARK 465 THR B 159 REMARK 465 LYS B 160 REMARK 465 ARG B 161 REMARK 465 ALA B 162 REMARK 465 ASN B 163 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 69 CD OE1 NE2 REMARK 470 ARG B 126 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 64 31.57 -98.75 REMARK 500 TYR A 66 -31.89 78.11 REMARK 500 ASN A 92 19.21 58.64 REMARK 500 ARG A 126 -65.50 73.49 REMARK 500 ARG A 126 -66.15 73.49 REMARK 500 TYR B 66 -18.39 68.58 REMARK 500 MSE B 70 130.52 -170.43 REMARK 500 HIS B 118 -4.77 72.01 REMARK 500 ARG B 126 -3.13 76.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 405915 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED REMARK 999 CONSTRUCT CONTAINS RESIDUES 29-163 OF THE FULL LENGTH PROTEIN. DBREF 3PJY A 29 163 UNP Q92PM3 Q92PM3_RHIME 29 163 DBREF 3PJY B 29 163 UNP Q92PM3 Q92PM3_RHIME 29 163 SEQADV 3PJY GLY A 0 UNP Q92PM3 EXPRESSION TAG SEQADV 3PJY GLY B 0 UNP Q92PM3 EXPRESSION TAG SEQRES 1 A 136 GLY GLU VAL SER TYR ALA LYS GLU ARG VAL ARG LEU ILE SEQRES 2 A 136 THR ALA SER GLY ARG THR HIS ASP LEU THR VAL GLU LEU SEQRES 3 A 136 ALA VAL ASP PRO SER GLN ARG GLU GLN GLY LEU MSE TYR SEQRES 4 A 136 ARG ARG GLN MSE ALA PRO ASP HIS GLY MSE LEU PHE ASP SEQRES 5 A 136 PHE GLY GLU THR ARG PRO VAL MSE MSE TRP MSE LYS ASN SEQRES 6 A 136 THR TYR LEU PRO LEU ASP MSE LEU PHE ILE ALA SER ASP SEQRES 7 A 136 GLY THR ILE ARG THR ILE HIS GLU ASN ALA VAL PRO HIS SEQRES 8 A 136 SER GLU ALA ILE ILE ASP SER ARG GLU PRO VAL ALA TYR SEQRES 9 A 136 VAL LEU GLU LEU ASN ALA GLY THR VAL LYS ARG LEU GLY SEQRES 10 A 136 VAL SER PRO GLY ASP ARG LEU GLU GLY ALA GLY LEU PRO SEQRES 11 A 136 ALA THR LYS ARG ALA ASN SEQRES 1 B 136 GLY GLU VAL SER TYR ALA LYS GLU ARG VAL ARG LEU ILE SEQRES 2 B 136 THR ALA SER GLY ARG THR HIS ASP LEU THR VAL GLU LEU SEQRES 3 B 136 ALA VAL ASP PRO SER GLN ARG GLU GLN GLY LEU MSE TYR SEQRES 4 B 136 ARG ARG GLN MSE ALA PRO ASP HIS GLY MSE LEU PHE ASP SEQRES 5 B 136 PHE GLY GLU THR ARG PRO VAL MSE MSE TRP MSE LYS ASN SEQRES 6 B 136 THR TYR LEU PRO LEU ASP MSE LEU PHE ILE ALA SER ASP SEQRES 7 B 136 GLY THR ILE ARG THR ILE HIS GLU ASN ALA VAL PRO HIS SEQRES 8 B 136 SER GLU ALA ILE ILE ASP SER ARG GLU PRO VAL ALA TYR SEQRES 9 B 136 VAL LEU GLU LEU ASN ALA GLY THR VAL LYS ARG LEU GLY SEQRES 10 B 136 VAL SER PRO GLY ASP ARG LEU GLU GLY ALA GLY LEU PRO SEQRES 11 B 136 ALA THR LYS ARG ALA ASN MODRES 3PJY MSE A 65 MET SELENOMETHIONINE MODRES 3PJY MSE A 70 MET SELENOMETHIONINE MODRES 3PJY MSE A 76 MET SELENOMETHIONINE MODRES 3PJY MSE A 87 MET SELENOMETHIONINE MODRES 3PJY MSE A 88 MET SELENOMETHIONINE MODRES 3PJY MSE A 90 MET SELENOMETHIONINE MODRES 3PJY MSE A 99 MET SELENOMETHIONINE MODRES 3PJY MSE B 65 MET SELENOMETHIONINE MODRES 3PJY MSE B 70 MET SELENOMETHIONINE MODRES 3PJY MSE B 76 MET SELENOMETHIONINE MODRES 3PJY MSE B 87 MET SELENOMETHIONINE MODRES 3PJY MSE B 88 MET SELENOMETHIONINE MODRES 3PJY MSE B 90 MET SELENOMETHIONINE MODRES 3PJY MSE B 99 MET SELENOMETHIONINE HET MSE A 65 8 HET MSE A 70 8 HET MSE A 76 16 HET MSE A 87 8 HET MSE A 88 8 HET MSE A 90 8 HET MSE A 99 8 HET MSE B 65 8 HET MSE B 70 8 HET MSE B 76 8 HET MSE B 87 8 HET MSE B 88 8 HET MSE B 90 8 HET MSE B 99 8 HET SO4 A 203 5 HET SO4 A 204 5 HET CL B 201 1 HET CL B 202 1 HET SO4 B 205 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 CL 2(CL 1-) FORMUL 8 HOH *278(H2 O) HELIX 1 1 ASP A 56 GLY A 63 1 8 HELIX 2 2 GLY A 138 GLY A 144 1 7 HELIX 3 3 ASP B 56 GLY B 63 1 8 HELIX 4 4 GLY B 138 GLY B 144 1 7 SHEET 1 A 7 ILE A 108 ALA A 115 0 SHEET 2 A 7 LEU A 97 ILE A 102 -1 N LEU A 97 O ALA A 115 SHEET 3 A 7 VAL A 129 ASN A 136 -1 O LEU A 133 N LEU A 100 SHEET 4 A 7 HIS A 74 ARG A 84 -1 N PHE A 78 O VAL A 132 SHEET 5 A 7 THR A 46 ALA A 54 1 N ALA A 54 O ASP A 79 SHEET 6 A 7 ALA A 33 ILE A 40 -1 N ALA A 33 O LEU A 53 SHEET 7 A 7 ARG A 150 GLY A 153 -1 O ARG A 150 N ILE A 40 SHEET 1 B 2 MSE A 87 MSE A 88 0 SHEET 2 B 2 ILE A 123 ASP A 124 -1 O ILE A 123 N MSE A 88 SHEET 1 C 7 ILE B 108 ALA B 115 0 SHEET 2 C 7 LEU B 97 ILE B 102 -1 N PHE B 101 O THR B 110 SHEET 3 C 7 VAL B 129 ASN B 136 -1 O TYR B 131 N ILE B 102 SHEET 4 C 7 HIS B 74 ARG B 84 -1 N PHE B 78 O VAL B 132 SHEET 5 C 7 THR B 46 ALA B 54 1 N ALA B 54 O ASP B 79 SHEET 6 C 7 ALA B 33 ILE B 40 -1 N ALA B 33 O LEU B 53 SHEET 7 C 7 ARG B 150 GLU B 152 -1 O ARG B 150 N ILE B 40 SHEET 1 D 2 MSE B 87 MSE B 88 0 SHEET 2 D 2 ILE B 123 ASP B 124 -1 O ILE B 123 N MSE B 88 LINK C ALEU A 64 N MSE A 65 1555 1555 1.33 LINK C BLEU A 64 N MSE A 65 1555 1555 1.32 LINK C MSE A 65 N TYR A 66 1555 1555 1.32 LINK C GLN A 69 N MSE A 70 1555 1555 1.33 LINK C MSE A 70 N ALA A 71 1555 1555 1.33 LINK C GLY A 75 N AMSE A 76 1555 1555 1.33 LINK C GLY A 75 N BMSE A 76 1555 1555 1.33 LINK C AMSE A 76 N LEU A 77 1555 1555 1.33 LINK C BMSE A 76 N LEU A 77 1555 1555 1.34 LINK C VAL A 86 N MSE A 87 1555 1555 1.33 LINK C MSE A 87 N MSE A 88 1555 1555 1.34 LINK C MSE A 88 N TRP A 89 1555 1555 1.32 LINK C TRP A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N LYS A 91 1555 1555 1.35 LINK C ASP A 98 N MSE A 99 1555 1555 1.34 LINK C MSE A 99 N LEU A 100 1555 1555 1.33 LINK C LEU B 64 N MSE B 65 1555 1555 1.32 LINK C MSE B 65 N TYR B 66 1555 1555 1.32 LINK C AGLN B 69 N MSE B 70 1555 1555 1.33 LINK C BGLN B 69 N MSE B 70 1555 1555 1.34 LINK C MSE B 70 N ALA B 71 1555 1555 1.34 LINK C GLY B 75 N MSE B 76 1555 1555 1.32 LINK C MSE B 76 N LEU B 77 1555 1555 1.33 LINK C VAL B 86 N MSE B 87 1555 1555 1.31 LINK C MSE B 87 N MSE B 88 1555 1555 1.35 LINK C MSE B 88 N TRP B 89 1555 1555 1.32 LINK C TRP B 89 N MSE B 90 1555 1555 1.33 LINK C MSE B 90 N LYS B 91 1555 1555 1.32 LINK C ASP B 98 N MSE B 99 1555 1555 1.33 LINK C MSE B 99 N LEU B 100 1555 1555 1.33 CISPEP 1 LEU B 156 PRO B 157 0 9.01 SITE 1 AC1 4 HIS A 112 ARG A 126 HOH A 362 HOH A 406 SITE 1 AC2 11 ARG A 67 GLN A 69 MSE A 70 ALA A 71 SITE 2 AC2 11 HIS A 74 HOH A 388 HOH A 425 HOH A 426 SITE 3 AC2 11 ARG B 84 HOH B 338 HOH B 368 SITE 1 AC3 4 HOH A 231 HOH A 359 ARG B 68 GLN B 69 SITE 1 AC4 5 HOH A 385 SER B 43 ARG B 45 SER B 58 SITE 2 AC4 5 HOH B 233 SITE 1 AC5 7 ARG A 67 ARG A 68 GLN A 69 HOH A 260 SITE 2 AC5 7 ARG B 84 PRO B 85 HOH B 341 CRYST1 63.435 63.435 153.938 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015764 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006496 0.00000