HEADER MOTOR PROTEIN 12-NOV-10 3PKR OBSLTE 14-DEC-11 3PKR 3USW TITLE CRYSTAL STRUCTURE OF FLIG (RESIDUE 86-343) FROM H. PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLAR MOTOR SWITCH PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 86-343; COMPND 5 SYNONYM: FLIG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 STRAIN: 26695; SOURCE 5 GENE: HP_0352; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAC28M KEYWDS MOTOR SWITCH, FLIF, FLIM, MOTA, FLAGELLAR MOTOR, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.W.N.AU,K.H.LAM REVDAT 2 14-DEC-11 3PKR 1 OBSLTE REVDAT 1 16-NOV-11 3PKR 0 JRNL AUTH K.H.LAM,K.W.LING,K.M.OTTEMANN,S.W.N.AU JRNL TITL CRYSTAL STRUCTURE OF FLIG FROM H. PYLORI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 10695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 535 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 804 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.94000 REMARK 3 B22 (A**2) : -1.94000 REMARK 3 B33 (A**2) : 2.91000 REMARK 3 B12 (A**2) : -0.97000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.284 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.249 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.163 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1710 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2300 ; 1.645 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ; 5.667 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;37.791 ;25.890 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 344 ;18.386 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;25.822 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 276 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1223 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1078 ; 0.859 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1740 ; 1.715 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 632 ; 2.723 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 559 ; 4.776 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): -25.7805 -41.4341 -0.0558 REMARK 3 T TENSOR REMARK 3 T11: -0.0135 T22: -0.0188 REMARK 3 T33: 0.0981 T12: 0.0127 REMARK 3 T13: 0.0252 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 1.2003 L22: 0.2777 REMARK 3 L33: 0.9604 L12: -0.6427 REMARK 3 L13: 0.9392 L23: -0.7195 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: 0.1691 S13: 0.0733 REMARK 3 S21: -0.0134 S22: -0.0654 S23: -0.0889 REMARK 3 S31: -0.0102 S32: 0.1778 S33: 0.0954 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-NOV-10. REMARK 100 THE RCSB ID CODE IS RCSB062492. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11276 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 41.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM SULFATE, 0.3M SODIUM REMARK 280 FORMATE, 0.1M TRIS, 1% PGA, 7% PEG8000, PH 7.8, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.52000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.26000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.89000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 6.63000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 HIS A 67 REMARK 465 HIS A 68 REMARK 465 HIS A 69 REMARK 465 HIS A 70 REMARK 465 HIS A 71 REMARK 465 MET A 72 REMARK 465 ALA A 73 REMARK 465 SER A 74 REMARK 465 MET A 75 REMARK 465 THR A 76 REMARK 465 GLY A 77 REMARK 465 GLY A 78 REMARK 465 GLN A 79 REMARK 465 GLN A 80 REMARK 465 MET A 81 REMARK 465 GLY A 82 REMARK 465 ARG A 83 REMARK 465 GLY A 84 REMARK 465 SER A 85 REMARK 465 LEU A 86 REMARK 465 GLU A 87 REMARK 465 TYR A 88 REMARK 465 ALA A 89 REMARK 465 ARG A 90 REMARK 465 GLU A 91 REMARK 465 LEU A 92 REMARK 465 LEU A 93 REMARK 465 THR A 94 REMARK 465 ARG A 95 REMARK 465 THR A 96 REMARK 465 LEU A 97 REMARK 465 GLY A 98 REMARK 465 SER A 99 REMARK 465 GLU A 100 REMARK 465 GLU A 101 REMARK 465 ALA A 102 REMARK 465 LYS A 103 REMARK 465 LYS A 104 REMARK 465 VAL A 105 REMARK 465 MET A 106 REMARK 465 ASP A 107 REMARK 465 LYS A 108 REMARK 465 LEU A 109 REMARK 465 THR A 110 REMARK 465 LYS A 111 REMARK 465 SER A 112 REMARK 465 LEU A 113 REMARK 465 GLN A 114 REMARK 465 THR A 115 REMARK 465 GLN A 116 REMARK 465 SER A 200 REMARK 465 TYR A 201 REMARK 465 LYS A 202 REMARK 465 GLY A 336 REMARK 465 GLU A 337 REMARK 465 GLU A 338 REMARK 465 GLU A 339 REMARK 465 ASP A 340 REMARK 465 VAL A 341 REMARK 465 ILE A 342 REMARK 465 GLU A 343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 203 CG1 CG2 CD1 REMARK 470 GLU A 204 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 185 O HOH A 27 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 168 CG GLU A 168 CD 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 118 86.69 -16.57 REMARK 500 PHE A 119 41.24 -70.58 REMARK 500 TYR A 121 -7.15 -56.83 REMARK 500 LEU A 176 -84.11 -91.72 REMARK 500 GLU A 178 34.26 -99.27 REMARK 500 SER A 197 16.49 -51.42 REMARK 500 LEU A 198 -146.44 -178.97 REMARK 500 VAL A 233 -32.05 -143.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ARG A 293 23.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 10 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH A 24 DISTANCE = 6.23 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PL4 RELATED DB: PDB REMARK 900 FLIG (RESIDUE 116-343) DBREF 3PKR A 86 343 UNP O25119 O25119_HELPY 86 343 SEQADV 3PKR HIS A 65 UNP O25119 EXPRESSION TAG SEQADV 3PKR HIS A 66 UNP O25119 EXPRESSION TAG SEQADV 3PKR HIS A 67 UNP O25119 EXPRESSION TAG SEQADV 3PKR HIS A 68 UNP O25119 EXPRESSION TAG SEQADV 3PKR HIS A 69 UNP O25119 EXPRESSION TAG SEQADV 3PKR HIS A 70 UNP O25119 EXPRESSION TAG SEQADV 3PKR HIS A 71 UNP O25119 EXPRESSION TAG SEQADV 3PKR MET A 72 UNP O25119 EXPRESSION TAG SEQADV 3PKR ALA A 73 UNP O25119 EXPRESSION TAG SEQADV 3PKR SER A 74 UNP O25119 EXPRESSION TAG SEQADV 3PKR MET A 75 UNP O25119 EXPRESSION TAG SEQADV 3PKR THR A 76 UNP O25119 EXPRESSION TAG SEQADV 3PKR GLY A 77 UNP O25119 EXPRESSION TAG SEQADV 3PKR GLY A 78 UNP O25119 EXPRESSION TAG SEQADV 3PKR GLN A 79 UNP O25119 EXPRESSION TAG SEQADV 3PKR GLN A 80 UNP O25119 EXPRESSION TAG SEQADV 3PKR MET A 81 UNP O25119 EXPRESSION TAG SEQADV 3PKR GLY A 82 UNP O25119 EXPRESSION TAG SEQADV 3PKR ARG A 83 UNP O25119 EXPRESSION TAG SEQADV 3PKR GLY A 84 UNP O25119 EXPRESSION TAG SEQADV 3PKR SER A 85 UNP O25119 EXPRESSION TAG SEQRES 1 A 279 HIS HIS HIS HIS HIS HIS HIS MET ALA SER MET THR GLY SEQRES 2 A 279 GLY GLN GLN MET GLY ARG GLY SER LEU GLU TYR ALA ARG SEQRES 3 A 279 GLU LEU LEU THR ARG THR LEU GLY SER GLU GLU ALA LYS SEQRES 4 A 279 LYS VAL MET ASP LYS LEU THR LYS SER LEU GLN THR GLN SEQRES 5 A 279 LYS ASN PHE ALA TYR LEU GLY LYS ILE LYS PRO GLN GLN SEQRES 6 A 279 LEU ALA ASP PHE ILE ILE ASN GLU HIS PRO GLN THR ILE SEQRES 7 A 279 ALA LEU ILE LEU ALA HIS MET GLU ALA PRO ASN ALA ALA SEQRES 8 A 279 GLU THR LEU SER TYR PHE PRO ASP GLU MET LYS ALA GLU SEQRES 9 A 279 ILE SER ILE ARG MET ALA ASN LEU GLY GLU ILE SER PRO SEQRES 10 A 279 GLN VAL VAL LYS ARG VAL SER THR VAL LEU GLU ASN LYS SEQRES 11 A 279 LEU GLU SER LEU THR SER TYR LYS ILE GLU VAL GLY GLY SEQRES 12 A 279 LEU ARG ALA VAL ALA GLU ILE PHE ASN ARG LEU GLY GLN SEQRES 13 A 279 LYS SER ALA LYS THR THR LEU ALA ARG ILE GLU SER VAL SEQRES 14 A 279 ASP ASN LYS LEU ALA GLY ALA ILE LYS GLU MET MET PHE SEQRES 15 A 279 THR PHE GLU ASP ILE VAL LYS LEU ASP ASN PHE ALA ILE SEQRES 16 A 279 ARG GLU ILE LEU LYS VAL ALA ASP LYS LYS ASP LEU SER SEQRES 17 A 279 LEU ALA LEU LYS THR SER THR LYS ASP LEU THR ASP LYS SEQRES 18 A 279 PHE LEU ASN ASN MET SER SER ARG ALA ALA GLU GLN PHE SEQRES 19 A 279 VAL GLU GLU MET GLN TYR LEU GLY ALA VAL LYS ILE LYS SEQRES 20 A 279 ASP VAL ASP VAL ALA GLN ARG LYS ILE ILE GLU ILE VAL SEQRES 21 A 279 GLN SER LEU GLN GLU LYS GLY VAL ILE GLN THR GLY GLU SEQRES 22 A 279 GLU GLU ASP VAL ILE GLU FORMUL 2 HOH *27(H2 O) HELIX 1 1 PHE A 119 ILE A 125 5 7 HELIX 2 2 LYS A 126 ILE A 135 1 10 HELIX 3 3 HIS A 138 HIS A 148 1 11 HELIX 4 4 GLU A 150 SER A 159 1 10 HELIX 5 5 PRO A 162 ASN A 175 1 14 HELIX 6 6 SER A 180 SER A 197 1 18 HELIX 7 7 GLY A 207 ARG A 217 1 11 HELIX 8 8 GLY A 219 SER A 232 1 14 HELIX 9 9 ASP A 234 GLU A 243 1 10 HELIX 10 10 THR A 247 LEU A 254 5 8 HELIX 11 11 ASP A 255 ALA A 266 1 12 HELIX 12 12 ASP A 267 LEU A 275 1 9 HELIX 13 13 THR A 279 ASN A 288 1 10 HELIX 14 14 SER A 291 LEU A 305 1 15 HELIX 15 15 LYS A 309 LYS A 330 1 22 CRYST1 125.460 125.460 39.780 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007971 0.004602 0.000000 0.00000 SCALE2 0.000000 0.009204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025138 0.00000