HEADER MOTOR PROTEIN 12-NOV-10 3PL4 OBSLTE 14-DEC-11 3PL4 3USY TITLE CRYSTAL STRUCTURE OF FLIG (RESIDUE 116-343) FROM H. PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLAR MOTOR SWITCH PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 116-343; COMPND 5 SYNONYM: FLIG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 STRAIN: 26695; SOURCE 5 GENE: HP_0352; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2 KEYWDS MOTOR SWITCH, FLIF, FLIM, MOTA, FLAGELLAR MOTOR, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.W.N.AU,K.H.LAM REVDAT 2 14-DEC-11 3PL4 1 OBSLTE REVDAT 1 16-NOV-11 3PL4 0 JRNL AUTH K.H.LAM,K.W.LING,K.M.OTTEMANN,S.W.N.AU JRNL TITL CRYSTAL STRUCTURE OF FLIG FROM H. PYLORI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 999 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1339 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03000 REMARK 3 B22 (A**2) : -2.80000 REMARK 3 B33 (A**2) : 1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.340 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.268 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.823 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3576 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4807 ; 1.667 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 6.142 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;35.769 ;25.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 718 ;19.003 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;25.118 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 570 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2562 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2258 ; 0.746 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3643 ; 1.480 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1318 ; 2.393 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1164 ; 4.238 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 110 A 173 5 REMARK 3 1 B 110 B 173 5 REMARK 3 2 A 181 A 196 5 REMARK 3 2 B 181 B 196 5 REMARK 3 3 A 208 A 233 5 REMARK 3 3 B 208 B 233 5 REMARK 3 4 A 235 A 244 5 REMARK 3 4 B 235 B 244 5 REMARK 3 5 A 245 A 330 5 REMARK 3 5 B 245 B 330 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 804 ; 0.970 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 782 ; 1.140 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 804 ; 0.870 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 782 ; 1.120 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3077 -33.3940 6.5879 REMARK 3 T TENSOR REMARK 3 T11: 0.0522 T22: 0.0119 REMARK 3 T33: 0.0032 T12: -0.0094 REMARK 3 T13: -0.0007 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.7358 L22: 0.5885 REMARK 3 L33: 0.0930 L12: -0.5254 REMARK 3 L13: 0.0083 L23: 0.0505 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: 0.0212 S13: -0.0358 REMARK 3 S21: 0.0712 S22: 0.0041 S23: 0.0376 REMARK 3 S31: 0.0299 S32: -0.0136 S33: 0.0007 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 110 B 336 REMARK 3 ORIGIN FOR THE GROUP (A): 60.7528 -2.0643 34.9267 REMARK 3 T TENSOR REMARK 3 T11: 0.0984 T22: 0.0356 REMARK 3 T33: 0.0790 T12: 0.0108 REMARK 3 T13: -0.0078 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.0174 L22: 0.9844 REMARK 3 L33: 0.0029 L12: 0.9968 REMARK 3 L13: -0.0243 L23: -0.0263 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.0050 S13: 0.0398 REMARK 3 S21: -0.0260 S22: -0.0017 S23: 0.0223 REMARK 3 S31: -0.0009 S32: -0.0027 S33: 0.0152 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-NOV-10. REMARK 100 THE RCSB ID CODE IS RCSB062505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18550 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 10% PEG6000, 0.02M REMARK 280 SPERMIDINE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.68900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.28200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.68900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.28200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 85.37800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 132.50142 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 83.20967 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 337 REMARK 465 GLU A 338 REMARK 465 GLU A 339 REMARK 465 ASP A 340 REMARK 465 VAL A 341 REMARK 465 ILE A 342 REMARK 465 GLU A 343 REMARK 465 GLU B 337 REMARK 465 GLU B 338 REMARK 465 GLU B 339 REMARK 465 ASP B 340 REMARK 465 VAL B 341 REMARK 465 ILE B 342 REMARK 465 GLU B 343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 116 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 293 NE ARG B 293 CZ 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 293 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 293 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 151 -58.16 -22.15 REMARK 500 SER A 232 30.41 -73.62 REMARK 500 VAL A 233 -8.96 -163.64 REMARK 500 ASP A 234 84.45 174.43 REMARK 500 THR A 277 40.41 -109.17 REMARK 500 THR A 335 -74.69 -114.79 REMARK 500 SER B 114 -158.46 -132.42 REMARK 500 ASN B 118 -91.34 -57.50 REMARK 500 PHE B 119 38.12 -88.80 REMARK 500 ILE B 179 119.92 -166.80 REMARK 500 TYR B 304 4.35 -63.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 205 22.2 L L OUTSIDE RANGE REMARK 500 ARG A 293 24.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PKR RELATED DB: PDB REMARK 900 FLIG (RESIDUE 86-343) DBREF 3PL4 A 116 343 UNP O25119 O25119_HELPY 116 343 DBREF 3PL4 B 116 343 UNP O25119 O25119_HELPY 116 343 SEQADV 3PL4 GLY A 110 UNP O25119 EXPRESSION TAG SEQADV 3PL4 PRO A 111 UNP O25119 EXPRESSION TAG SEQADV 3PL4 LEU A 112 UNP O25119 EXPRESSION TAG SEQADV 3PL4 GLY A 113 UNP O25119 EXPRESSION TAG SEQADV 3PL4 SER A 114 UNP O25119 EXPRESSION TAG SEQADV 3PL4 MET A 115 UNP O25119 EXPRESSION TAG SEQADV 3PL4 GLY B 110 UNP O25119 EXPRESSION TAG SEQADV 3PL4 PRO B 111 UNP O25119 EXPRESSION TAG SEQADV 3PL4 LEU B 112 UNP O25119 EXPRESSION TAG SEQADV 3PL4 GLY B 113 UNP O25119 EXPRESSION TAG SEQADV 3PL4 SER B 114 UNP O25119 EXPRESSION TAG SEQADV 3PL4 MET B 115 UNP O25119 EXPRESSION TAG SEQRES 1 A 234 GLY PRO LEU GLY SER MET GLN LYS ASN PHE ALA TYR LEU SEQRES 2 A 234 GLY LYS ILE LYS PRO GLN GLN LEU ALA ASP PHE ILE ILE SEQRES 3 A 234 ASN GLU HIS PRO GLN THR ILE ALA LEU ILE LEU ALA HIS SEQRES 4 A 234 MET GLU ALA PRO ASN ALA ALA GLU THR LEU SER TYR PHE SEQRES 5 A 234 PRO ASP GLU MET LYS ALA GLU ILE SER ILE ARG MET ALA SEQRES 6 A 234 ASN LEU GLY GLU ILE SER PRO GLN VAL VAL LYS ARG VAL SEQRES 7 A 234 SER THR VAL LEU GLU ASN LYS LEU GLU SER LEU THR SER SEQRES 8 A 234 TYR LYS ILE GLU VAL GLY GLY LEU ARG ALA VAL ALA GLU SEQRES 9 A 234 ILE PHE ASN ARG LEU GLY GLN LYS SER ALA LYS THR THR SEQRES 10 A 234 LEU ALA ARG ILE GLU SER VAL ASP ASN LYS LEU ALA GLY SEQRES 11 A 234 ALA ILE LYS GLU MET MET PHE THR PHE GLU ASP ILE VAL SEQRES 12 A 234 LYS LEU ASP ASN PHE ALA ILE ARG GLU ILE LEU LYS VAL SEQRES 13 A 234 ALA ASP LYS LYS ASP LEU SER LEU ALA LEU LYS THR SER SEQRES 14 A 234 THR LYS ASP LEU THR ASP LYS PHE LEU ASN ASN MET SER SEQRES 15 A 234 SER ARG ALA ALA GLU GLN PHE VAL GLU GLU MET GLN TYR SEQRES 16 A 234 LEU GLY ALA VAL LYS ILE LYS ASP VAL ASP VAL ALA GLN SEQRES 17 A 234 ARG LYS ILE ILE GLU ILE VAL GLN SER LEU GLN GLU LYS SEQRES 18 A 234 GLY VAL ILE GLN THR GLY GLU GLU GLU ASP VAL ILE GLU SEQRES 1 B 234 GLY PRO LEU GLY SER MET GLN LYS ASN PHE ALA TYR LEU SEQRES 2 B 234 GLY LYS ILE LYS PRO GLN GLN LEU ALA ASP PHE ILE ILE SEQRES 3 B 234 ASN GLU HIS PRO GLN THR ILE ALA LEU ILE LEU ALA HIS SEQRES 4 B 234 MET GLU ALA PRO ASN ALA ALA GLU THR LEU SER TYR PHE SEQRES 5 B 234 PRO ASP GLU MET LYS ALA GLU ILE SER ILE ARG MET ALA SEQRES 6 B 234 ASN LEU GLY GLU ILE SER PRO GLN VAL VAL LYS ARG VAL SEQRES 7 B 234 SER THR VAL LEU GLU ASN LYS LEU GLU SER LEU THR SER SEQRES 8 B 234 TYR LYS ILE GLU VAL GLY GLY LEU ARG ALA VAL ALA GLU SEQRES 9 B 234 ILE PHE ASN ARG LEU GLY GLN LYS SER ALA LYS THR THR SEQRES 10 B 234 LEU ALA ARG ILE GLU SER VAL ASP ASN LYS LEU ALA GLY SEQRES 11 B 234 ALA ILE LYS GLU MET MET PHE THR PHE GLU ASP ILE VAL SEQRES 12 B 234 LYS LEU ASP ASN PHE ALA ILE ARG GLU ILE LEU LYS VAL SEQRES 13 B 234 ALA ASP LYS LYS ASP LEU SER LEU ALA LEU LYS THR SER SEQRES 14 B 234 THR LYS ASP LEU THR ASP LYS PHE LEU ASN ASN MET SER SEQRES 15 B 234 SER ARG ALA ALA GLU GLN PHE VAL GLU GLU MET GLN TYR SEQRES 16 B 234 LEU GLY ALA VAL LYS ILE LYS ASP VAL ASP VAL ALA GLN SEQRES 17 B 234 ARG LYS ILE ILE GLU ILE VAL GLN SER LEU GLN GLU LYS SEQRES 18 B 234 GLY VAL ILE GLN THR GLY GLU GLU GLU ASP VAL ILE GLU FORMUL 3 HOH *32(H2 O) HELIX 1 1 PHE A 119 ILE A 125 5 7 HELIX 2 2 LYS A 126 ILE A 134 1 9 HELIX 3 3 HIS A 138 HIS A 148 1 11 HELIX 4 4 GLU A 150 SER A 159 1 10 HELIX 5 5 PRO A 162 ASN A 175 1 14 HELIX 6 6 SER A 180 LEU A 195 1 16 HELIX 7 7 LEU A 195 SER A 200 1 6 HELIX 8 8 GLY A 207 LEU A 218 1 12 HELIX 9 9 GLY A 219 SER A 232 1 14 HELIX 10 10 ASP A 234 MET A 245 1 12 HELIX 11 11 THR A 247 LEU A 254 5 8 HELIX 12 12 ASP A 255 ALA A 266 1 12 HELIX 13 13 ASP A 267 LEU A 275 1 9 HELIX 14 14 THR A 279 ASN A 288 1 10 HELIX 15 15 ARG A 293 TYR A 304 1 12 HELIX 16 16 LYS A 309 LYS A 330 1 22 HELIX 17 17 PHE B 119 GLY B 123 5 5 HELIX 18 18 LYS B 126 ILE B 134 1 9 HELIX 19 19 HIS B 138 HIS B 148 1 11 HELIX 20 20 GLU B 150 SER B 159 1 10 HELIX 21 21 PRO B 162 ASN B 175 1 14 HELIX 22 22 SER B 180 GLU B 196 1 17 HELIX 23 23 GLY B 207 LEU B 218 1 12 HELIX 24 24 GLY B 219 SER B 232 1 14 HELIX 25 25 ASP B 234 PHE B 246 1 13 HELIX 26 26 THR B 247 LEU B 254 5 8 HELIX 27 27 ASP B 255 ALA B 266 1 12 HELIX 28 28 ASP B 267 LEU B 275 1 9 HELIX 29 29 THR B 279 ASN B 288 1 10 HELIX 30 30 SER B 291 TYR B 304 1 14 HELIX 31 31 LYS B 309 LYS B 330 1 22 CISPEP 1 GLY A 177 GLU A 178 0 -13.13 CISPEP 2 GLY B 177 GLU B 178 0 3.12 CISPEP 3 THR B 335 GLY B 336 0 14.30 CRYST1 85.378 102.564 91.582 90.00 114.69 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011713 0.000000 0.005385 0.00000 SCALE2 0.000000 0.009750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012018 0.00000