HEADER PHOTOSYNTHESIS 14-NOV-10 3PL9 TITLE CRYSTAL STRUCTURE OF SPINACH MINOR LIGHT-HARVESTING COMPLEX CP29 AT TITLE 2 2.80 ANGSTROM RESOLUTION CAVEAT 3PL9 CLA A 602 HAS WRONG CHIRALITY AT ATOM C8 CLA A 604 HAS WRONG CAVEAT 2 3PL9 CHIRALITY AT ATOM C8 CLA A 604 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 3PL9 C13 CHL A 606 HAS WRONG CHIRALITY AT ATOM C8 CHL A 606 HAS CAVEAT 4 3PL9 WRONG CHIRALITY AT ATOM C13 CHL A 607 HAS WRONG CHIRALITY CAVEAT 5 3PL9 AT ATOM C8 CHL A 607 HAS WRONG CHIRALITY AT ATOM C13 CHL A CAVEAT 6 3PL9 608 HAS WRONG CHIRALITY AT ATOM C8 CHL A 608 HAS WRONG CAVEAT 7 3PL9 CHIRALITY AT ATOM C13 CLA A 609 HAS WRONG CHIRALITY AT ATOM CAVEAT 8 3PL9 C8 CLA A 609 HAS WRONG CHIRALITY AT ATOM C13 CLA A 610 HAS CAVEAT 9 3PL9 WRONG CHIRALITY AT ATOM C13 CLA A 611 HAS WRONG CHIRALITY CAVEAT 10 3PL9 AT ATOM C13 CLA A 612 HAS WRONG CHIRALITY AT ATOM C8 CLA A CAVEAT 11 3PL9 612 HAS WRONG CHIRALITY AT ATOM C13 CLA A 613 HAS WRONG CAVEAT 12 3PL9 CHIRALITY AT ATOM C8 CLA A 613 HAS WRONG CHIRALITY AT ATOM CAVEAT 13 3PL9 C13 CHL A 614 HAS WRONG CHIRALITY AT ATOM C8 CHL A 614 HAS CAVEAT 14 3PL9 WRONG CHIRALITY AT ATOM C13 CLA A 615 HAS WRONG CHIRALITY CAVEAT 15 3PL9 AT ATOM C13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLOROPHYLL A-B BINDING PROTEIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPINACIA OLERACEA; SOURCE 3 ORGANISM_COMMON: SPINACH; SOURCE 4 ORGANISM_TAXID: 3562 KEYWDS CP29, CHLOROPHYLL A-B BINDING PROTEIN, LIGHT-HARVESTING COMPLEX, KEYWDS 2 MEMBRANE PROTEIN, PLANT, PHOTOSYNTHESIS, CHLOROPLAST, THYLAKOID, KEYWDS 3 PHOTOSYSTEM II EXPDTA X-RAY DIFFRACTION AUTHOR X.W.PAN,M.LI,T.WAN,L.F.WANG,C.J.JIA,Z.Q.HOU,X.L.ZHAO,J.P.ZHANG, AUTHOR 2 W.R.CHANG REVDAT 5 20-MAR-24 3PL9 1 HETSYN FORMUL REVDAT 4 29-JUL-20 3PL9 1 COMPND REMARK HETNAM HETSYN REVDAT 4 2 1 LINK SITE REVDAT 3 25-DEC-19 3PL9 1 JRNL REVDAT 2 01-MAY-19 3PL9 1 CAVEAT REMARK LINK ATOM REVDAT 1 09-FEB-11 3PL9 0 JRNL AUTH X.PAN,M.LI,T.WAN,L.WANG,C.JIA,Z.HOU,X.ZHAO,J.ZHANG,W.CHANG JRNL TITL STRUCTURAL INSIGHTS INTO ENERGY REGULATION OF JRNL TITL 2 LIGHT-HARVESTING COMPLEX CP29 FROM SPINACH. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 309 2011 JRNL REFN ESSN 1545-9985 JRNL PMID 21297637 JRNL DOI 10.1038/NSMB.2008 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3581533.950 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 14624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.282 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 750 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1297 REMARK 3 BIN R VALUE (WORKING SET) : 0.3680 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 66 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.048 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1217 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1021 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : -1.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM SIGMAA (A) : 0.47 REMARK 3 LOW RESOLUTION CUTOFF (A) : 50.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.46 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 2.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.080 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.500 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.140 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.470 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.25 REMARK 3 BSOL : 40.43 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PROSTHETIC_LUT_VIO-HTG-G3P-CP29-RENUMBER REMARK 3 -020.PAPRAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : PROSTHETIC_LUT_VIO-HTG-G3P-CP29-RENUMBER REMARK 3 -020.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3PL9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99985 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14714 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 40.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.58600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, PH 6.5, 2.80% (W/V) HTG, REMARK 280 19% (W/V) PEG 1000, 0.1M SODIUM CHLORIDE, 0.19M AMMONIUM SULFATE REMARK 280 , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 283.85200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 141.92600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 212.88900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.96300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 354.81500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 283.85200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 141.92600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 70.96300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 212.88900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 354.81500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 LYS A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 PHE A 7 REMARK 465 SER A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 ARG A 11 REMARK 465 PRO A 12 REMARK 465 LEU A 13 REMARK 465 TRP A 14 REMARK 465 TYR A 15 REMARK 465 PRO A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 LYS A 19 REMARK 465 ALA A 20 REMARK 465 PRO A 21 REMARK 465 GLU A 22 REMARK 465 TYR A 23 REMARK 465 LEU A 24 REMARK 465 ASP A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 LEU A 28 REMARK 465 VAL A 29 REMARK 465 GLY A 30 REMARK 465 ASP A 31 REMARK 465 TYR A 32 REMARK 465 GLY A 33 REMARK 465 PHE A 34 REMARK 465 ASP A 35 REMARK 465 PRO A 36 REMARK 465 PHE A 37 REMARK 465 GLY A 38 REMARK 465 LEU A 39 REMARK 465 GLY A 40 REMARK 465 LYS A 41 REMARK 465 PRO A 42 REMARK 465 ALA A 43 REMARK 465 GLU A 44 REMARK 465 TYR A 45 REMARK 465 LEU A 46 REMARK 465 GLN A 47 REMARK 465 TYR A 48 REMARK 465 ASP A 49 REMARK 465 TYR A 50 REMARK 465 ASP A 51 REMARK 465 GLY A 52 REMARK 465 LEU A 53 REMARK 465 ASP A 54 REMARK 465 GLN A 55 REMARK 465 ASN A 56 REMARK 465 LEU A 57 REMARK 465 ALA A 58 REMARK 465 LYS A 59 REMARK 465 ASN A 60 REMARK 465 LEU A 61 REMARK 465 ALA A 62 REMARK 465 GLY A 63 REMARK 465 ASP A 64 REMARK 465 ILE A 65 REMARK 465 ILE A 66 REMARK 465 GLY A 67 REMARK 465 THR A 68 REMARK 465 ARG A 69 REMARK 465 THR A 70 REMARK 465 GLU A 71 REMARK 465 SER A 72 REMARK 465 ALA A 73 REMARK 465 ASP A 74 REMARK 465 VAL A 75 REMARK 465 LYS A 76 REMARK 465 SER A 77 REMARK 465 THR A 78 REMARK 465 SER A 79 REMARK 465 LEU A 80 REMARK 465 GLN A 81 REMARK 465 PRO A 82 REMARK 465 TYR A 83 REMARK 465 SER A 84 REMARK 465 GLU A 85 REMARK 465 VAL A 86 REMARK 465 PHE A 87 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 89 -80.82 -105.39 REMARK 500 GLN A 90 -38.90 -35.33 REMARK 500 PHE A 142 136.85 -39.49 REMARK 500 GLU A 165 122.25 -178.63 REMARK 500 THR A 168 -29.95 -27.83 REMARK 500 PRO A 174 -33.62 -39.61 REMARK 500 ASP A 179 59.75 -149.53 REMARK 500 LEU A 181 -18.45 -49.22 REMARK 500 ASP A 232 79.51 -151.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 264 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH A 267 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 270 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A 273 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 278 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 296 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 297 DISTANCE = 9.26 ANGSTROMS REMARK 525 HOH A 298 DISTANCE = 9.98 ANGSTROMS REMARK 525 HOH A 302 DISTANCE = 7.22 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 HTG A 631 REMARK 610 HTG A 632 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 96 OE1 REMARK 620 2 CLA A 602 NA 90.5 REMARK 620 3 CLA A 602 NB 90.2 90.8 REMARK 620 4 CLA A 602 NC 91.4 176.7 91.9 REMARK 620 5 CLA A 602 ND 90.4 89.6 179.3 87.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA A 609 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 159 OE1 REMARK 620 2 CLA A 609 NA 91.5 REMARK 620 3 CLA A 609 NB 92.5 89.6 REMARK 620 4 CLA A 609 NC 93.1 175.3 90.8 REMARK 620 5 CLA A 609 ND 89.0 91.0 178.4 88.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA A 610 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 197 OE1 REMARK 620 2 CLA A 610 NA 91.1 REMARK 620 3 CLA A 610 NB 89.1 89.4 REMARK 620 4 CLA A 610 NC 92.1 176.5 92.0 REMARK 620 5 CLA A 610 ND 90.8 90.2 179.6 88.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA A 613 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 214 OE1 REMARK 620 2 CLA A 613 NA 86.0 REMARK 620 3 CLA A 613 NB 92.8 90.0 REMARK 620 4 CLA A 613 NC 92.2 177.8 91.5 REMARK 620 5 CLA A 613 ND 86.7 91.5 178.3 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL A 607 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 245 O REMARK 620 2 CHL A 607 NA 96.9 REMARK 620 3 CHL A 607 NB 91.7 91.1 REMARK 620 4 CHL A 607 NC 83.7 177.4 91.4 REMARK 620 5 CHL A 607 ND 88.4 89.5 179.4 88.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL A 608 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 247 O REMARK 620 2 CHL A 608 NA 84.6 REMARK 620 3 CHL A 608 NB 111.4 90.7 REMARK 620 4 CHL A 608 NC 106.8 166.7 91.3 REMARK 620 5 CHL A 608 ND 79.7 88.4 168.7 87.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL A 606 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 248 O REMARK 620 2 CHL A 606 NA 92.6 REMARK 620 3 CHL A 606 NB 92.7 89.7 REMARK 620 4 CHL A 606 NC 90.1 177.3 90.7 REMARK 620 5 CHL A 606 ND 95.5 90.7 171.8 88.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 307 O REMARK 620 2 CLA A 604 NA 83.4 REMARK 620 3 CLA A 604 NB 94.3 89.3 REMARK 620 4 CLA A 604 NC 108.5 168.1 91.1 REMARK 620 5 CLA A 604 ND 93.4 90.3 172.2 87.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA A 611 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G3P A 630 O3P REMARK 620 2 CLA A 611 NA 69.9 REMARK 620 3 CLA A 611 NB 113.6 90.3 REMARK 620 4 CLA A 611 NC 115.4 173.2 91.2 REMARK 620 5 CLA A 611 ND 76.2 89.2 169.4 88.1 REMARK 620 6 G3P A 630 O2P 58.9 118.8 81.9 68.0 107.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA A 615 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G3P A 630 O4P REMARK 620 2 CLA A 615 NA 81.6 REMARK 620 3 CLA A 615 NB 97.3 89.8 REMARK 620 4 CLA A 615 NC 105.7 172.2 91.7 REMARK 620 5 CLA A 615 ND 99.6 89.1 162.7 87.1 REMARK 620 N 1 2 3 4 REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. DBREF 3PL9 A 1 243 PDB 3PL9 3PL9 1 243 SEQRES 1 A 243 ALA GLN PRO LYS SER GLY PHE SER THR ASP ARG PRO LEU SEQRES 2 A 243 TRP TYR PRO GLY ALA LYS ALA PRO GLU TYR LEU ASP GLY SEQRES 3 A 243 SER LEU VAL GLY ASP TYR GLY PHE ASP PRO PHE GLY LEU SEQRES 4 A 243 GLY LYS PRO ALA GLU TYR LEU GLN TYR ASP TYR ASP GLY SEQRES 5 A 243 LEU ASP GLN ASN LEU ALA LYS ASN LEU ALA GLY ASP ILE SEQRES 6 A 243 ILE GLY THR ARG THR GLU SER ALA ASP VAL LYS SER THR SEQRES 7 A 243 SER LEU GLN PRO TYR SER GLU VAL PHE GLY LEU GLN ARG SEQRES 8 A 243 PHE ARG GLU CYS GLU LEU ILE HIS GLY ARG TRP ALA MET SEQRES 9 A 243 LEU ALA THR LEU GLY ALA LEU THR VAL GLU GLY LEU THR SEQRES 10 A 243 GLY ILE THR TRP GLN ASP ALA GLY LYS VAL GLU LEU ILE SEQRES 11 A 243 GLU GLY SER SER TYR LEU GLY GLN PRO LEU PRO PHE SER SEQRES 12 A 243 MET THR THR LEU ILE TRP ILE GLU VAL LEU VAL ILE GLY SEQRES 13 A 243 TYR ILE GLU PHE GLN ARG ASN ALA GLU LEU ASP THR GLU SEQRES 14 A 243 LYS ARG LEU TYR PRO GLY GLY THR PHE ASP PRO LEU GLY SEQRES 15 A 243 LEU ALA SER ASP PRO GLU LYS LYS PRO ILE LEU GLN LEU SEQRES 16 A 243 ALA GLU ILE LYS HIS ALA ARG LEU ALA MET VAL GLY PHE SEQRES 17 A 243 LEU GLY PHE ALA VAL GLN ALA ALA VAL THR GLY LYS GLY SEQRES 18 A 243 PRO LEU ASN ASN TRP VAL THR HIS LEU SER ASP PRO LEU SEQRES 19 A 243 HIS THR THR ILE LEU ASP ARG PHE LEU HET CLA A 602 65 HET CLA A 603 65 HET CLA A 604 65 HET CHL A 606 66 HET CHL A 607 66 HET CHL A 608 66 HET CLA A 609 65 HET CLA A 610 65 HET CLA A 611 65 HET CLA A 612 65 HET CLA A 613 65 HET CHL A 614 66 HET CLA A 615 65 HET LUT A 620 42 HET XAT A 622 44 HET NEX A 623 44 HET G3P A 630 10 HET HTG A 631 17 HET HTG A 632 15 HETNAM CLA CHLOROPHYLL A HETNAM CHL CHLOROPHYLL B HETNAM LUT (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA- HETNAM 2 LUT CAROTENE-3,3'-DIOL HETNAM XAT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- HETNAM 2 XAT TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL HETNAM NEX (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R, HETNAM 2 NEX 6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT- HETNAM 3 NEX 1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13, HETNAM 4 NEX 15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3- HETNAM 5 NEX DIOL HETNAM G3P SN-GLYCEROL-3-PHOSPHATE HETNAM HTG HEPTYL 1-THIO-BETA-D-GLUCOPYRANOSIDE HETSYN LUT (3R,3'R)-BETA,BETA-CAROTENE-3,3'-DIOL; LUTEIN HETSYN XAT VIOLAXANTHIN HETSYN NEX (3S,5R,6R,3'S,5'R,6'S)-5',6'-EPOXY-6,7-DIDEHYDRO- 5,6, HETSYN 2 NEX 5',6'-TETRAHYDRO-BETA,BETA-CAROTENE-3,5,3'-TRIOL; 9'- HETSYN 3 NEX CIS-NEOXANTHIN HETSYN HTG HEPTYL 1-THIOHEXOPYRANOSIDE; HEPTYL 1-THIO-BETA-D- HETSYN 2 HTG GLUCOSIDE; HEPTYL 1-THIO-D-GLUCOSIDE; HEPTYL 1-THIO- HETSYN 3 HTG GLUCOSIDE FORMUL 2 CLA 9(C55 H72 MG N4 O5) FORMUL 5 CHL 4(C55 H70 MG N4 O6 2+) FORMUL 15 LUT C40 H56 O2 FORMUL 16 XAT C40 H56 O4 FORMUL 17 NEX C40 H56 O4 FORMUL 18 G3P C3 H9 O6 P FORMUL 19 HTG 2(C13 H26 O5 S) FORMUL 21 HOH *79(H2 O) HELIX 1 1 LEU A 89 GLY A 118 1 30 HELIX 2 2 ASP A 123 GLU A 131 1 9 HELIX 3 3 SER A 143 ALA A 164 1 22 HELIX 4 4 GLY A 175 ASP A 179 5 5 HELIX 5 5 LYS A 189 GLY A 219 1 31 HELIX 6 6 GLY A 221 ASP A 232 1 12 HELIX 7 7 PRO A 233 THR A 237 5 5 SHEET 1 A 2 SER A 133 TYR A 135 0 SHEET 2 A 2 GLN A 138 LEU A 140 -1 O LEU A 140 N SER A 133 LINK OE1 GLU A 96 MG CLA A 602 1555 1555 2.15 LINK OE1 GLU A 159 MG CLA A 609 1555 1555 2.16 LINK OE1 GLU A 197 MG CLA A 610 1555 1555 2.14 LINK OE1 GLN A 214 MG CLA A 613 1555 1555 2.18 LINK O HOH A 245 MG CHL A 607 1555 1555 2.25 LINK O HOH A 247 MG CHL A 608 1555 1555 2.27 LINK O HOH A 248 MG CHL A 606 1555 1555 2.28 LINK O HOH A 307 MG CLA A 604 1555 1555 2.19 LINK MG CLA A 611 O3P G3P A 630 1555 1555 2.58 LINK MG CLA A 611 O2P G3P A 630 1555 1555 2.81 LINK MG CLA A 615 O4P G3P A 630 1555 1555 2.19 CRYST1 68.793 68.793 425.778 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014536 0.008393 0.000000 0.00000 SCALE2 0.000000 0.016785 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002349 0.00000