HEADER ISOMERASE/IMMUNOSUPPRESSANT 17-NOV-10 3PMP TITLE CRYSTAL STRUCTURE OF CYCLOPHILIN A FROM MONILIOPHTHORA PERNICIOSA IN TITLE 2 COMPLEX WITH CYCLOSPORIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLOPHILIN A; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.2.1.8; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CYCLOSPORIN A; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MONILIOPHTHORA PERNICIOSA; SOURCE 3 ORGANISM_TAXID: 153609; SOURCE 4 GENE: CPY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: TOLYPOCLADIUM INFLATUM; SOURCE 13 ORGANISM_COMMON: TOLYPOCLADIUM NIVEUM,BEAUVERIA NIVEA; SOURCE 14 ORGANISM_TAXID: 29910 KEYWDS PEPTIDYL PROLYL ISOMERASE, ISOMERASE-IMMUNOSUPPRESSANT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.MONZANI,H.M.PEREIRA,K.P.GRAMACHO,F.V.MEIRELLES,G.OLIVA, AUTHOR 2 J.C.C.CASCARDO REVDAT 4 31-MAY-23 3PMP 1 LINK REVDAT 3 28-JAN-15 3PMP 1 DBREF SEQRES REVDAT 2 15-FEB-12 3PMP 1 COMPND HETATM REVDAT 1 23-NOV-11 3PMP 0 JRNL AUTH P.MONZANI,H.M.PEREIRA,K.P.GRAMACHO,F.V.MEIRELLES,G.OLIVA, JRNL AUTH 2 J.C.C.CASCARDO JRNL TITL CRYSTAL STRUCTURE OF CYCLOPHILIN A FROM MONILIOPHTHORA JRNL TITL 2 PERNICIOSA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6_289 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 54370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 46.66 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.63260 REMARK 3 B22 (A**2) : 1.63260 REMARK 3 B33 (A**2) : -3.26520 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 26.5311 -7.3720 18.7670 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.1094 REMARK 3 T33: 0.0970 T12: -0.0114 REMARK 3 T13: 0.0015 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.0692 L22: 0.7025 REMARK 3 L33: 0.6174 L12: -0.0384 REMARK 3 L13: -0.0134 L23: -0.1947 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: 0.0167 S13: -0.0058 REMARK 3 S21: -0.0178 S22: 0.0356 S23: 0.0436 REMARK 3 S31: 0.0486 S32: -0.0779 S33: -0.0401 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 27.1567 8.7951 -12.3120 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: 0.0466 REMARK 3 T33: 0.0454 T12: 0.0093 REMARK 3 T13: 0.0027 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.2338 L22: 0.6762 REMARK 3 L33: 0.3392 L12: 0.1344 REMARK 3 L13: 0.0413 L23: 0.0425 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: -0.0207 S13: 0.0239 REMARK 3 S21: 0.0010 S22: 0.0145 S23: 0.0610 REMARK 3 S31: -0.0410 S32: -0.0322 S33: -0.0056 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 30.7392 5.3643 -34.3542 REMARK 3 T TENSOR REMARK 3 T11: 0.1457 T22: 0.1040 REMARK 3 T33: 0.0878 T12: -0.0183 REMARK 3 T13: -0.0041 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.2931 L22: 0.2628 REMARK 3 L33: 0.0604 L12: 0.0483 REMARK 3 L13: -0.1050 L23: 0.0567 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: -0.0690 S13: 0.0017 REMARK 3 S21: 0.0006 S22: -0.0003 S23: 0.0350 REMARK 3 S31: 0.0208 S32: 0.0155 S33: -0.0289 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 30.5097 -4.1591 -20.4560 REMARK 3 T TENSOR REMARK 3 T11: 0.1495 T22: 0.1006 REMARK 3 T33: 0.0984 T12: 0.0091 REMARK 3 T13: 0.0091 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.0305 L22: 0.0190 REMARK 3 L33: 0.1450 L12: 0.0232 REMARK 3 L13: -0.0219 L23: -0.0067 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: 0.0067 S13: 0.0143 REMARK 3 S21: 0.0244 S22: 0.0184 S23: 0.0618 REMARK 3 S31: 0.0038 S32: 0.0773 S33: -0.0263 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.42 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57546 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 73.559 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : 0.66000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 100 MM TRIS, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.01400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.01400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.01400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.01400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.01400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.01400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.01400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.01400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CYCLOSPORIN IS A CYCLIC UNDECAPEPTIDE. REMARK 400 HERE, CYCLOSPORIN A IS REPRESENTED BY THE SEQUENCE (SEQRES) REMARK 400 REMARK 400 THE CYCLOSPORIN A IS CYCLIC PEPTIDE, A MEMBER OF IMMUNOSUPPRESSANT REMARK 400 CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: CYCLOSPORIN A REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: CYCLOSPORIN IS A CYCLIC UNDECAPEPTIDE. CYCLIZATION REMARK 400 IS ACHIEVED BY LINKING THE N- AND THE C- TERMINI. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 163 REMARK 465 ALA B 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N DAL C 1 O ALA C 11 2.07 REMARK 500 N DAL D 1 O ALA D 11 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DAL C 1 CA - C - N ANGL. DEV. = 22.1 DEGREES REMARK 500 DAL C 1 O - C - N ANGL. DEV. = -18.0 DEGREES REMARK 500 MLE C 2 C - N - CA ANGL. DEV. = 29.9 DEGREES REMARK 500 MLE C 2 CA - C - N ANGL. DEV. = 24.7 DEGREES REMARK 500 MLE C 2 O - C - N ANGL. DEV. = -16.3 DEGREES REMARK 500 MLE C 3 C - N - CA ANGL. DEV. = 18.1 DEGREES REMARK 500 MLE C 3 CA - C - N ANGL. DEV. = 21.5 DEGREES REMARK 500 MLE C 3 O - C - N ANGL. DEV. = -18.0 DEGREES REMARK 500 MVA C 4 C - N - CA ANGL. DEV. = 22.1 DEGREES REMARK 500 MVA C 4 CA - C - N ANGL. DEV. = 16.4 DEGREES REMARK 500 MVA C 4 O - C - N ANGL. DEV. = -17.9 DEGREES REMARK 500 BMT C 5 C - N - CA ANGL. DEV. = 17.6 DEGREES REMARK 500 BMT C 5 CA - C - N ANGL. DEV. = 14.7 DEGREES REMARK 500 BMT C 5 O - C - N ANGL. DEV. = -14.5 DEGREES REMARK 500 ABA C 6 C - N - CA ANGL. DEV. = 24.2 DEGREES REMARK 500 ABA C 6 CA - C - N ANGL. DEV. = 22.5 DEGREES REMARK 500 ABA C 6 O - C - N ANGL. DEV. = -18.4 DEGREES REMARK 500 SAR C 7 C - N - CA ANGL. DEV. = 21.4 DEGREES REMARK 500 SAR C 7 CA - C - N ANGL. DEV. = 31.5 DEGREES REMARK 500 SAR C 7 O - C - N ANGL. DEV. = -18.2 DEGREES REMARK 500 MLE C 8 C - N - CA ANGL. DEV. = 23.6 DEGREES REMARK 500 MLE C 8 CA - C - N ANGL. DEV. = 18.3 DEGREES REMARK 500 MLE C 8 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 VAL C 9 CA - C - N ANGL. DEV. = 25.1 DEGREES REMARK 500 VAL C 9 O - C - N ANGL. DEV. = -19.8 DEGREES REMARK 500 MLE C 10 C - N - CA ANGL. DEV. = 21.3 DEGREES REMARK 500 MLE C 10 CA - C - N ANGL. DEV. = 14.9 DEGREES REMARK 500 MLE C 10 O - C - N ANGL. DEV. = -13.1 DEGREES REMARK 500 ALA C 11 C - N - CA ANGL. DEV. = 16.9 DEGREES REMARK 500 DAL D 1 CA - C - N ANGL. DEV. = 15.4 DEGREES REMARK 500 DAL D 1 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 MLE D 3 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 MLE D 3 CA - C - N ANGL. DEV. = 20.6 DEGREES REMARK 500 MLE D 3 O - C - N ANGL. DEV. = -20.3 DEGREES REMARK 500 MVA D 4 C - N - CA ANGL. DEV. = 23.2 DEGREES REMARK 500 MVA D 4 CA - C - N ANGL. DEV. = 18.9 DEGREES REMARK 500 MVA D 4 O - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 BMT D 5 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 BMT D 5 O - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 ABA D 6 C - N - CA ANGL. DEV. = 24.2 DEGREES REMARK 500 ABA D 6 CA - C - N ANGL. DEV. = 18.8 DEGREES REMARK 500 ABA D 6 O - C - N ANGL. DEV. = -16.8 DEGREES REMARK 500 SAR D 7 C - N - CA ANGL. DEV. = 22.4 DEGREES REMARK 500 SAR D 7 CA - C - N ANGL. DEV. = 33.3 DEGREES REMARK 500 SAR D 7 O - C - N ANGL. DEV. = -19.7 DEGREES REMARK 500 MLE D 8 C - N - CA ANGL. DEV. = 20.4 DEGREES REMARK 500 MLE D 8 O - C - N ANGL. DEV. = -10.5 DEGREES REMARK 500 VAL D 9 CA - C - N ANGL. DEV. = 24.8 DEGREES REMARK 500 VAL D 9 O - C - N ANGL. DEV. = -19.6 DEGREES REMARK 500 MLE D 10 C - N - CA ANGL. DEV. = 21.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 52 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 -11.64 -162.58 REMARK 500 PHE A 58 -74.45 -140.10 REMARK 500 MET B 1 -176.00 160.82 REMARK 500 PHE B 58 -79.44 -139.39 REMARK 500 ASN B 85 -179.91 -172.83 REMARK 500 MVA C 4 55.43 -113.28 REMARK 500 MLE C 8 77.23 -67.20 REMARK 500 MVA D 4 59.92 -113.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ABA D 6 SAR D 7 149.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ABA D 6 -13.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF CYCLOSPORIN A REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF CYCLOSPORIN A REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3O7T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CYCLOPHILIN A FROM MONILIOPHTHORA PERNICIOSA DBREF 3PMP C 1 11 NOR NOR00033 NOR00033 1 11 DBREF 3PMP D 1 11 NOR NOR00033 NOR00033 1 11 DBREF 3PMP A 0 163 PDB 3PMP 3PMP 0 163 DBREF 3PMP B 0 163 PDB 3PMP 3PMP 0 163 SEQRES 1 A 164 ALA MET ALA ASN VAL PHE PHE ASN ILE SER ILE ASN ASP SEQRES 2 A 164 LYS PRO GLU GLY ARG ILE VAL PHE LYS LEU TYR ASP GLU SEQRES 3 A 164 ALA VAL PRO LYS THR ALA LYS ASN PHE ARG GLU LEU ALA SEQRES 4 A 164 THR GLY GLN HIS GLY PHE GLY TYR LYS ASP SER ILE PHE SEQRES 5 A 164 HIS ARG VAL ILE PRO GLN PHE MET LEU GLN GLY GLY ASP SEQRES 6 A 164 PHE THR ARG HIS ASN GLY THR GLY GLY LYS SER ILE TYR SEQRES 7 A 164 GLY GLU LYS PHE ALA ASP GLU ASN PHE GLN VAL LYS HIS SEQRES 8 A 164 THR LYS PRO GLY LEU LEU SER MET ALA ASN ALA GLY ALA SEQRES 9 A 164 ASN THR ASN GLY SER GLN PHE PHE ILE THR THR VAL PRO SEQRES 10 A 164 THR SER TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY GLU SEQRES 11 A 164 VAL ILE GLU GLY LEU ASP ILE VAL ARG LYS VAL GLU GLY SEQRES 12 A 164 LYS GLY SER ALA SER GLY LYS THR ASN ALA THR ILE LYS SEQRES 13 A 164 ILE THR ASP CYS GLY THR VAL ALA SEQRES 1 B 164 ALA MET ALA ASN VAL PHE PHE ASN ILE SER ILE ASN ASP SEQRES 2 B 164 LYS PRO GLU GLY ARG ILE VAL PHE LYS LEU TYR ASP GLU SEQRES 3 B 164 ALA VAL PRO LYS THR ALA LYS ASN PHE ARG GLU LEU ALA SEQRES 4 B 164 THR GLY GLN HIS GLY PHE GLY TYR LYS ASP SER ILE PHE SEQRES 5 B 164 HIS ARG VAL ILE PRO GLN PHE MET LEU GLN GLY GLY ASP SEQRES 6 B 164 PHE THR ARG HIS ASN GLY THR GLY GLY LYS SER ILE TYR SEQRES 7 B 164 GLY GLU LYS PHE ALA ASP GLU ASN PHE GLN VAL LYS HIS SEQRES 8 B 164 THR LYS PRO GLY LEU LEU SER MET ALA ASN ALA GLY ALA SEQRES 9 B 164 ASN THR ASN GLY SER GLN PHE PHE ILE THR THR VAL PRO SEQRES 10 B 164 THR SER TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY GLU SEQRES 11 B 164 VAL ILE GLU GLY LEU ASP ILE VAL ARG LYS VAL GLU GLY SEQRES 12 B 164 LYS GLY SER ALA SER GLY LYS THR ASN ALA THR ILE LYS SEQRES 13 B 164 ILE THR ASP CYS GLY THR VAL ALA SEQRES 1 C 11 DAL MLE MLE MVA BMT ABA SAR MLE VAL MLE ALA SEQRES 1 D 11 DAL MLE MLE MVA BMT ABA SAR MLE VAL MLE ALA HET DAL C 1 5 HET MLE C 2 9 HET MLE C 3 9 HET MVA C 4 8 HET BMT C 5 13 HET ABA C 6 6 HET SAR C 7 5 HET MLE C 8 9 HET MLE C 10 9 HET DAL D 1 5 HET MLE D 2 9 HET MLE D 3 9 HET MVA D 4 8 HET BMT D 5 13 HET ABA D 6 6 HET SAR D 7 5 HET MLE D 8 9 HET MLE D 10 9 HETNAM DAL D-ALANINE HETNAM MLE N-METHYLLEUCINE HETNAM MVA N-METHYLVALINE HETNAM BMT 4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM SAR SARCOSINE FORMUL 3 DAL 2(C3 H7 N O2) FORMUL 3 MLE 8(C7 H15 N O2) FORMUL 3 MVA 2(C6 H13 N O2) FORMUL 3 BMT 2(C10 H19 N O3) FORMUL 3 ABA 2(C4 H9 N O2) FORMUL 3 SAR 2(C3 H7 N O2) FORMUL 5 HOH *402(H2 O) HELIX 1 1 VAL A 27 GLY A 40 1 14 HELIX 2 2 THR A 117 ASP A 121 5 5 HELIX 3 3 GLY A 133 GLY A 142 1 10 HELIX 4 4 VAL B 27 GLY B 40 1 14 HELIX 5 5 THR B 117 ASP B 121 5 5 HELIX 6 6 GLY B 133 GLY B 142 1 10 SHEET 1 A 8 PHE A 51 ILE A 55 0 SHEET 2 A 8 MET A 59 GLY A 62 -1 O GLN A 61 N ARG A 53 SHEET 3 A 8 PHE A 110 THR A 113 -1 O PHE A 110 N GLY A 62 SHEET 4 A 8 LEU A 95 MET A 98 -1 N SER A 97 O PHE A 111 SHEET 5 A 8 VAL A 126 GLU A 132 -1 O GLY A 128 N LEU A 96 SHEET 6 A 8 LYS A 13 LEU A 22 -1 N VAL A 19 O ILE A 131 SHEET 7 A 8 VAL A 4 ILE A 10 -1 N VAL A 4 O PHE A 20 SHEET 8 A 8 ILE A 154 THR A 161 -1 O ASP A 158 N ASN A 7 SHEET 1 B 8 PHE B 51 ILE B 55 0 SHEET 2 B 8 MET B 59 GLY B 62 -1 O GLN B 61 N ARG B 53 SHEET 3 B 8 PHE B 110 THR B 113 -1 O PHE B 110 N GLY B 62 SHEET 4 B 8 LEU B 95 MET B 98 -1 N SER B 97 O PHE B 111 SHEET 5 B 8 VAL B 126 GLU B 132 -1 O PHE B 127 N LEU B 96 SHEET 6 B 8 LYS B 13 LEU B 22 -1 N VAL B 19 O ILE B 131 SHEET 7 B 8 VAL B 4 ILE B 10 -1 N VAL B 4 O PHE B 20 SHEET 8 B 8 ILE B 154 THR B 161 -1 O ASP B 158 N ASN B 7 LINK C DAL C 1 N MLE C 2 1555 1555 1.34 LINK N DAL C 1 C ALA C 11 1555 1555 1.32 LINK C MLE C 2 N MLE C 3 1555 1555 1.33 LINK C MLE C 3 N MVA C 4 1555 1555 1.32 LINK C BMT C 5 N ABA C 6 1555 1555 1.36 LINK C ABA C 6 N SAR C 7 1555 1555 1.36 LINK C SAR C 7 N MLE C 8 1555 1555 1.36 LINK C MLE C 8 N VAL C 9 1555 1555 1.37 LINK C VAL C 9 N MLE C 10 1555 1555 1.35 LINK C MLE C 10 N ALA C 11 1555 1555 1.34 LINK C DAL D 1 N MLE D 2 1555 1555 1.22 LINK N DAL D 1 C ALA D 11 1555 1555 1.34 LINK C MLE D 2 N MLE D 3 1555 1555 1.25 LINK C MLE D 3 N MVA D 4 1555 1555 1.33 LINK C BMT D 5 N ABA D 6 1555 1555 1.37 LINK C ABA D 6 N SAR D 7 1555 1555 1.37 LINK C SAR D 7 N MLE D 8 1555 1555 1.40 LINK C MLE D 8 N VAL D 9 1555 1555 1.35 LINK C VAL D 9 N MLE D 10 1555 1555 1.35 LINK C MLE D 10 N ALA D 11 1555 1555 1.36 SITE 1 AC1 5 MLE C 2 MLE C 3 ALA C 11 HOH C 101 SITE 2 AC1 5 HOH C 104 SITE 1 AC2 22 THR A 71 GLU A 79 HOH A 320 LYS B 29 SITE 2 AC2 22 LYS B 32 ARG B 53 PHE B 58 GLN B 61 SITE 3 AC2 22 GLY B 70 TYR B 77 ALA B 99 ASN B 100 SITE 4 AC2 22 ALA B 101 GLN B 109 PHE B 111 TRP B 119 SITE 5 AC2 22 HIS B 124 ABA C 6 SAR C 7 MLE C 8 SITE 6 AC2 22 HOH D 101 HOH D 102 CRYST1 104.028 104.028 61.305 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016312 0.00000