HEADER HYDROLASE 17-NOV-10 3PMS TITLE RECOMBINANT PEPTIDE: N-GLYCANASE F (PNGASE F) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE:N-GLYCOSIDASE F; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.1.52; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ELIZABETHKINGIA MENINGOSEPTICA; SOURCE 3 ORGANISM_COMMON: CHRYSEOBACTERIUM MENINGOSEPTICUM; SOURCE 4 ORGANISM_TAXID: 238; SOURCE 5 STRAIN: CDC 3552; SOURCE 6 GENE: PNG; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: OPH6 KEYWDS JELLY ROLL FOLD, N-GLYCANASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.FILITCHEVA,B.F.ANDERSON,G.E.NORRIS REVDAT 3 08-NOV-23 3PMS 1 REMARK REVDAT 2 31-MAY-23 3PMS 1 REMARK SEQADV REVDAT 1 26-JAN-11 3PMS 0 JRNL AUTH J.FILITCHEVA,B.F.ANDERSON,G.E.NORRIS JRNL TITL RECOMBINANT PEPTIDE:N-GLYCANASE F (PNGASE F) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2256 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2468 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 424 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.11000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : -0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.281 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2636 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1771 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3585 ; 1.821 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4330 ; 0.927 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 7.080 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;35.010 ;24.696 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 411 ;13.677 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;10.833 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2894 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 526 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1581 ; 1.608 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 639 ; 0.535 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2569 ; 2.475 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1055 ; 3.282 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1008 ; 5.044 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3PMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000062564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : CAPILLARY OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41972 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 40.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PGS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4000, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM ACETATE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.28000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ILE A -1 REMARK 465 PRO A 0 REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 316 REMARK 465 PRO A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LEU A 169 O HOH A 349 2.03 REMARK 500 O3 GOL A 329 O HOH A 649 2.08 REMARK 500 O LYS A 163 O HOH A 348 2.11 REMARK 500 O HIS A 165 O HOH A 413 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 362 O HOH A 697 2444 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 76 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 5 3.29 83.72 REMARK 500 THR A 11 -111.12 -120.78 REMARK 500 TRP A 86 -43.44 68.54 REMARK 500 TYR A 151 77.31 -119.04 REMARK 500 ASN A 152 12.91 -151.88 REMARK 500 ASN A 218 -7.52 79.59 REMARK 500 ASN A 288 51.04 -154.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 337 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PGS RELATED DB: PDB REMARK 900 NATIVE PNGASE F REMARK 900 RELATED ID: 1PNG RELATED DB: PDB REMARK 900 NATIVE PNGASE F REMARK 900 RELATED ID: 1PNF RELATED DB: PDB REMARK 900 PNGASE F COMPLEX WITH DI-N-ACETYLCHITOBIOSE DBREF 3PMS A 1 314 UNP Q9XBM8 Q9XBM8_FLAME 1 314 SEQADV 3PMS GLY A -2 UNP Q9XBM8 EXPRESSION TAG SEQADV 3PMS ILE A -1 UNP Q9XBM8 EXPRESSION TAG SEQADV 3PMS PRO A 0 UNP Q9XBM8 EXPRESSION TAG SEQADV 3PMS LEU A 315 UNP Q9XBM8 EXPRESSION TAG SEQADV 3PMS ASP A 316 UNP Q9XBM8 EXPRESSION TAG SEQADV 3PMS PRO A 317 UNP Q9XBM8 EXPRESSION TAG SEQADV 3PMS HIS A 318 UNP Q9XBM8 EXPRESSION TAG SEQADV 3PMS HIS A 319 UNP Q9XBM8 EXPRESSION TAG SEQADV 3PMS HIS A 320 UNP Q9XBM8 EXPRESSION TAG SEQADV 3PMS HIS A 321 UNP Q9XBM8 EXPRESSION TAG SEQADV 3PMS HIS A 322 UNP Q9XBM8 EXPRESSION TAG SEQADV 3PMS HIS A 323 UNP Q9XBM8 EXPRESSION TAG SEQRES 1 A 326 GLY ILE PRO ALA PRO ALA ASP ASN THR VAL ASN ILE LYS SEQRES 2 A 326 THR PHE ASP LYS VAL LYS ASN ALA PHE GLY ASP GLY LEU SEQRES 3 A 326 SER GLN SER ALA GLU GLY THR PHE THR PHE PRO ALA ASP SEQRES 4 A 326 VAL THR ALA VAL LYS THR ILE LYS MET PHE ILE LYS ASN SEQRES 5 A 326 GLU CYS PRO ASN LYS THR CYS ASP GLU TRP ASP ARG TYR SEQRES 6 A 326 ALA ASN VAL TYR VAL LYS ASN LYS THR THR GLY GLU TRP SEQRES 7 A 326 TYR GLU ILE GLY ARG PHE ILE THR PRO TYR TRP VAL GLY SEQRES 8 A 326 THR GLU LYS LEU PRO ARG GLY LEU GLU ILE ASP VAL THR SEQRES 9 A 326 ASP PHE LYS SER LEU LEU SER GLY ASN THR GLU LEU LYS SEQRES 10 A 326 ILE TYR THR GLU THR TRP LEU ALA LYS GLY ARG GLU TYR SEQRES 11 A 326 SER VAL ASP PHE ASP ILE VAL TYR GLY THR PRO ASP TYR SEQRES 12 A 326 LYS TYR SER ALA VAL VAL PRO VAL VAL GLN TYR ASN LYS SEQRES 13 A 326 SER SER ILE ASP GLY VAL PRO TYR GLY LYS ALA HIS THR SEQRES 14 A 326 LEU ALA LEU LYS LYS ASN ILE GLN LEU PRO THR ASN THR SEQRES 15 A 326 GLU LYS ALA TYR LEU ARG THR THR ILE SER GLY TRP GLY SEQRES 16 A 326 HIS ALA LYS PRO TYR ASP ALA GLY SER ARG GLY CYS ALA SEQRES 17 A 326 GLU TRP CYS PHE ARG THR HIS THR ILE ALA ILE ASN ASN SEQRES 18 A 326 SER ASN THR PHE GLN HIS GLN LEU GLY ALA LEU GLY CYS SEQRES 19 A 326 SER ALA ASN PRO ILE ASN ASN GLN SER PRO GLY ASN TRP SEQRES 20 A 326 THR PRO ASP ARG ALA GLY TRP CYS PRO GLY MET ALA VAL SEQRES 21 A 326 PRO THR ARG ILE ASP VAL LEU ASN ASN SER LEU ILE GLY SEQRES 22 A 326 SER THR PHE SER TYR GLU TYR LYS PHE GLN ASN TRP THR SEQRES 23 A 326 ASN ASN GLY THR ASN GLY ASP ALA PHE TYR ALA ILE SER SEQRES 24 A 326 SER PHE VAL ILE ALA LYS SER ASN THR PRO ILE SER ALA SEQRES 25 A 326 PRO VAL VAL THR ASN LEU ASP PRO HIS HIS HIS HIS HIS SEQRES 26 A 326 HIS HET SO4 A 324 5 HET SO4 A 325 5 HET GOL A 326 6 HET GOL A 327 6 HET GOL A 328 6 HET GOL A 329 6 HET GOL A 330 12 HET GOL A 331 6 HET GOL A 332 6 HET GOL A 333 6 HET GOL A 334 6 HET GOL A 335 6 HET ACT A 336 4 HET ACT A 337 4 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 GOL 10(C3 H8 O3) FORMUL 14 ACT 2(C2 H3 O2 1-) FORMUL 16 HOH *424(H2 O) HELIX 1 1 CYS A 51 THR A 55 5 5 HELIX 2 2 THR A 101 LYS A 104 5 4 HELIX 3 3 SER A 154 GLY A 158 5 5 HELIX 4 4 GLY A 230 ASN A 234 5 5 HELIX 5 5 ASN A 265 ILE A 269 5 5 SHEET 1 A 3 THR A 6 LYS A 10 0 SHEET 2 A 3 ARG A 125 TYR A 135 -1 O ILE A 133 N VAL A 7 SHEET 3 A 3 VAL A 15 ASN A 17 -1 N ASN A 17 O ARG A 125 SHEET 1 B 4 THR A 6 LYS A 10 0 SHEET 2 B 4 ARG A 125 TYR A 135 -1 O ILE A 133 N VAL A 7 SHEET 3 B 4 VAL A 40 ASN A 49 -1 N PHE A 46 O ASP A 130 SHEET 4 B 4 LEU A 96 ASP A 99 -1 O ILE A 98 N MET A 45 SHEET 1 C 5 SER A 26 PHE A 33 0 SHEET 2 C 5 GLY A 109 THR A 117 -1 O THR A 111 N PHE A 31 SHEET 3 C 5 TYR A 62 LYS A 68 -1 N TYR A 66 O LYS A 114 SHEET 4 C 5 TRP A 75 ILE A 82 -1 O TYR A 76 N VAL A 67 SHEET 5 C 5 MET A 255 ALA A 256 -1 O MET A 255 N ILE A 82 SHEET 1 D 3 TYR A 142 TYR A 151 0 SHEET 2 D 3 PHE A 292 SER A 303 -1 O SER A 297 N VAL A 148 SHEET 3 D 3 VAL A 159 PRO A 160 -1 N VAL A 159 O TYR A 293 SHEET 1 E 4 TYR A 142 TYR A 151 0 SHEET 2 E 4 PHE A 292 SER A 303 -1 O SER A 297 N VAL A 148 SHEET 3 E 4 LYS A 181 TRP A 191 -1 N TYR A 183 O ILE A 300 SHEET 4 E 4 ARG A 260 VAL A 263 -1 O ARG A 260 N THR A 186 SHEET 1 F 5 SER A 219 LEU A 226 0 SHEET 2 F 5 ARG A 210 ILE A 216 -1 N ARG A 210 O LEU A 226 SHEET 3 F 5 THR A 272 LYS A 278 -1 O LYS A 278 N THR A 213 SHEET 4 F 5 LYS A 170 GLN A 174 -1 N ILE A 173 O PHE A 273 SHEET 5 F 5 VAL A 311 THR A 313 -1 O THR A 313 N ASN A 172 SHEET 1 G 2 HIS A 193 ASP A 198 0 SHEET 2 G 2 ARG A 202 ALA A 205 -1 O CYS A 204 N ALA A 194 SSBOND 1 CYS A 51 CYS A 56 1555 1555 2.07 SSBOND 2 CYS A 204 CYS A 208 1555 1555 2.09 SSBOND 3 CYS A 231 CYS A 252 1555 1555 2.11 CISPEP 1 LYS A 195 PRO A 196 0 10.10 CISPEP 2 CYS A 204 ALA A 205 0 -4.90 CISPEP 3 SER A 240 PRO A 241 0 8.22 CISPEP 4 SER A 240 PRO A 241 0 11.31 SITE 1 AC1 10 LYS A 41 PRO A 138 ASP A 139 TYR A 140 SITE 2 AC1 10 LYS A 302 HOH A 463 HOH A 487 HOH A 556 SITE 3 AC1 10 HOH A 622 HOH A 639 SITE 1 AC2 4 GLY A 200 THR A 272 HOH A 358 HOH A 726 SITE 1 AC3 6 ASP A 60 TYR A 85 ASN A 243 GOL A 335 SITE 2 AC3 6 HOH A 417 HOH A 491 SITE 1 AC4 3 THR A 32 ASN A 110 HOH A 380 SITE 1 AC5 8 TYR A 161 GLY A 162 GLN A 280 ASN A 281 SITE 2 AC5 8 TRP A 282 HOH A 418 HOH A 617 HOH A 695 SITE 1 AC6 10 GLN A 174 LEU A 175 PRO A 176 THR A 177 SITE 2 AC6 10 ARG A 202 PRO A 246 SER A 308 HOH A 408 SITE 3 AC6 10 HOH A 649 HOH A 696 SITE 1 AC7 5 LEU A 229 MET A 255 HOH A 383 HOH A 502 SITE 2 AC7 5 HOH A 716 SITE 1 AC8 6 PRO A 138 LYS A 141 ILE A 156 ASN A 304 SITE 2 AC8 6 HOH A 499 HOH A 628 SITE 1 AC9 7 ARG A 61 GLU A 118 SER A 155 TRP A 191 SITE 2 AC9 7 GOL A 335 HOH A 495 HOH A 628 SITE 1 BC1 7 LYS A 181 TYR A 183 HOH A 403 HOH A 452 SITE 2 BC1 7 HOH A 487 HOH A 605 HOH A 619 SITE 1 BC2 8 LYS A 10 LYS A 48 ARG A 94 ASP A 130 SITE 2 BC2 8 HOH A 512 HOH A 689 HOH A 732 HOH A 737 SITE 1 BC3 7 ASP A 60 TRP A 191 GLU A 206 GOL A 326 SITE 2 BC3 7 GOL A 332 HOH A 467 HOH A 495 SITE 1 BC4 3 ASP A 132 VAL A 134 HOH A 691 SITE 1 BC5 4 GLN A 174 GLY A 200 SER A 201 HOH A 707 CRYST1 40.960 90.560 48.810 90.00 112.30 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024414 0.000000 0.010013 0.00000 SCALE2 0.000000 0.011042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022144 0.00000