HEADER TRANSCRIPTION REGULATOR 24-NOV-10 3PPB TITLE CRYSTAL STRUCTURE OF A PUTATIVE TETR FAMILY TRANSCRIPTION REGULATOR TITLE 2 (SHEW_3104) FROM SHEWANELLA SP. PV-4 AT 2.10 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TETR FAMILY TRANSCRIPTION REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA LOIHICA; SOURCE 3 ORGANISM_TAXID: 323850; SOURCE 4 STRAIN: PV-4; SOURCE 5 GENE: SHEW_3104; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS DNA-BINDING, HELIX-TURN-HELIX MOTIF, HTH MOTIF, DNA/RNA-BINDING 3- KEYWDS 2 HELICAL BUNDLE FOLD, TETRACYCLIN REPRESSOR-LIKE FOLD, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION, TRANSCRIPTION REGULATOR, STRUCTURAL KEYWDS 4 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 5 STRUCTURE INITIATIVE, PSI EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 20-NOV-24 3PPB 1 REMARK REVDAT 3 01-FEB-23 3PPB 1 REMARK SEQADV LINK REVDAT 2 20-JUL-11 3PPB 1 KEYWDS REVDAT 1 29-DEC-10 3PPB 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE TETR FAMILY TRANSCRIPTION JRNL TITL 2 REGULATOR (SHEW_3104) FROM SHEWANELLA SP. PV-4 AT 2.10 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1152 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2962 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2098 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2816 REMARK 3 BIN R VALUE (WORKING SET) : 0.2079 REMARK 3 BIN FREE R VALUE : 0.2466 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.93 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2960 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.06430 REMARK 3 B22 (A**2) : 0.54590 REMARK 3 B33 (A**2) : 4.51840 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3201 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4309 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1501 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 87 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 472 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3201 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 403 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3830 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.77 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.78 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|7 - A|194 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.4551 0.0301 60.5398 REMARK 3 T TENSOR REMARK 3 T11: 0.0079 T22: -0.0458 REMARK 3 T33: -0.1512 T12: 0.0194 REMARK 3 T13: 0.0173 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.2852 L22: 0.7012 REMARK 3 L33: 2.2597 L12: 0.0936 REMARK 3 L13: -0.0484 L23: -0.1066 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: 0.2571 S13: -0.0392 REMARK 3 S21: -0.0926 S22: 0.0083 S23: -0.1589 REMARK 3 S31: -0.0098 S32: 0.1730 S33: -0.0579 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|7 - B|194 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.7411 -1.0823 66.2564 REMARK 3 T TENSOR REMARK 3 T11: 0.0815 T22: -0.0921 REMARK 3 T33: -0.1115 T12: 0.0116 REMARK 3 T13: -0.0266 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.9401 L22: 0.3436 REMARK 3 L33: 2.4500 L12: 0.3334 REMARK 3 L13: 1.0408 L23: -0.1279 REMARK 3 S TENSOR REMARK 3 S11: 0.0160 S12: -0.0482 S13: 0.0076 REMARK 3 S21: -0.0374 S22: 0.0207 S23: 0.1159 REMARK 3 S31: -0.0877 S32: -0.0762 S33: -0.0367 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. NCS RESTRAINTS WERE APPLIED USING BUSTER'S REMARK 3 LSSR RESTRAINT REPRESENTATION (-AUTONCS). 3. ATOM RECORD REMARK 3 CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD REMARK 3 CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. CHLORIDE (CL) AND REMARK 3 PEG-400 FRAGMENTS (PEG AND PG4) FROM THE CRYSTALLIZATION REMARK 3 SOLUTION AND 1,2-ETHANEDIOL (EDO) FROM THE CRYOPROTECTANT HAVE REMARK 3 BEEN MODELED IN THE SOLVENT STRUCTURE. 5. THE SAD PHASES WERE REMARK 3 INCLUDED AS ADDITIONAL REFINEMENT RESTRAINTS. REMARK 4 REMARK 4 3PPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97903 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22569 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 28.919 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11900 REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.82100 REMARK 200 R SYM FOR SHELL (I) : 0.82100 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 30.0% PEG-400, 0.1M HEPES REMARK 280 PH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.88100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.86700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.02100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.86700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.88100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.02100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUPPORTS THE ASSIGNMENT OF A DIMER REMARK 300 AS THE SIGNIFICANT OLIGOMERIC FORM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 LYS A 6 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 LYS B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 19 CD OE1 NE2 REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 7 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 19 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 76 79.12 -113.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 217 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 399313 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3PPB A 1 194 UNP A3QHM2 A3QHM2_SHELP 1 194 DBREF 3PPB B 1 194 UNP A3QHM2 A3QHM2_SHELP 1 194 SEQADV 3PPB GLY A 0 UNP A3QHM2 EXPRESSION TAG SEQADV 3PPB GLY B 0 UNP A3QHM2 EXPRESSION TAG SEQRES 1 A 195 GLY MSE THR ALA SER SER LYS ARG THR LYS LYS GLN ALA SEQRES 2 A 195 ILE LEU GLU THR ALA LEU GLN LEU PHE VAL SER GLN GLY SEQRES 3 A 195 PHE HIS GLY THR SER THR ALA THR ILE ALA ARG GLU ALA SEQRES 4 A 195 GLY VAL ALA THR GLY THR LEU PHE HIS HIS PHE PRO SER SEQRES 5 A 195 LYS GLU GLN LEU LEU GLU GLN LEU PHE LEU GLY VAL LYS SEQRES 6 A 195 GLN GLU PHE ALA ASP ALA ILE GLN ALA SER VAL SER SER SEQRES 7 A 195 ARG GLY ASP LEU LYS GLN ASP ALA GLU GLN LEU TRP PHE SEQRES 8 A 195 ALA ALA LEU THR TRP ALA MSE ALA ASN PRO LEU LYS GLN SEQRES 9 A 195 ALA PHE PHE GLN LEU TYR SER MSE SER PRO THR VAL GLU SEQRES 10 A 195 GLN SER VAL ARG ASP GLN ALA MSE HIS GLY ILE LEU GLY SEQRES 11 A 195 PHE ILE ALA GLU LEU ILE ARG GLN GLY GLN ALA SER GLY SEQRES 12 A 195 GLU LEU ALA GLU TYR PRO ILE GLU LEU MSE GLN ASP ASN SEQRES 13 A 195 CYS HIS GLY GLN TYR LEU ALA ALA THR ARG TYR PHE VAL SEQRES 14 A 195 ASP HIS PRO GLU ARG TRP GLN GLN ALA HIS GLU ARG SER SEQRES 15 A 195 ALA SER PHE ALA LEU PHE TRP ASN ALA MSE ALA VAL ARG SEQRES 1 B 195 GLY MSE THR ALA SER SER LYS ARG THR LYS LYS GLN ALA SEQRES 2 B 195 ILE LEU GLU THR ALA LEU GLN LEU PHE VAL SER GLN GLY SEQRES 3 B 195 PHE HIS GLY THR SER THR ALA THR ILE ALA ARG GLU ALA SEQRES 4 B 195 GLY VAL ALA THR GLY THR LEU PHE HIS HIS PHE PRO SER SEQRES 5 B 195 LYS GLU GLN LEU LEU GLU GLN LEU PHE LEU GLY VAL LYS SEQRES 6 B 195 GLN GLU PHE ALA ASP ALA ILE GLN ALA SER VAL SER SER SEQRES 7 B 195 ARG GLY ASP LEU LYS GLN ASP ALA GLU GLN LEU TRP PHE SEQRES 8 B 195 ALA ALA LEU THR TRP ALA MSE ALA ASN PRO LEU LYS GLN SEQRES 9 B 195 ALA PHE PHE GLN LEU TYR SER MSE SER PRO THR VAL GLU SEQRES 10 B 195 GLN SER VAL ARG ASP GLN ALA MSE HIS GLY ILE LEU GLY SEQRES 11 B 195 PHE ILE ALA GLU LEU ILE ARG GLN GLY GLN ALA SER GLY SEQRES 12 B 195 GLU LEU ALA GLU TYR PRO ILE GLU LEU MSE GLN ASP ASN SEQRES 13 B 195 CYS HIS GLY GLN TYR LEU ALA ALA THR ARG TYR PHE VAL SEQRES 14 B 195 ASP HIS PRO GLU ARG TRP GLN GLN ALA HIS GLU ARG SER SEQRES 15 B 195 ALA SER PHE ALA LEU PHE TRP ASN ALA MSE ALA VAL ARG MODRES 3PPB MSE A 97 MET SELENOMETHIONINE MODRES 3PPB MSE A 111 MET SELENOMETHIONINE MODRES 3PPB MSE A 124 MET SELENOMETHIONINE MODRES 3PPB MSE A 152 MET SELENOMETHIONINE MODRES 3PPB MSE A 191 MET SELENOMETHIONINE MODRES 3PPB MSE B 97 MET SELENOMETHIONINE MODRES 3PPB MSE B 111 MET SELENOMETHIONINE MODRES 3PPB MSE B 124 MET SELENOMETHIONINE MODRES 3PPB MSE B 152 MET SELENOMETHIONINE MODRES 3PPB MSE B 191 MET SELENOMETHIONINE HET MSE A 97 8 HET MSE A 111 8 HET MSE A 124 8 HET MSE A 152 8 HET MSE A 191 13 HET MSE B 97 8 HET MSE B 111 8 HET MSE B 124 8 HET MSE B 152 8 HET MSE B 191 13 HET CL A 201 1 HET EDO A 203 4 HET EDO A 206 4 HET EDO A 209 4 HET EDO A 210 4 HET EDO A 211 4 HET EDO A 212 4 HET PEG A 215 7 HET PG4 A 216 13 HET PG4 A 218 13 HET CL B 202 1 HET EDO B 204 4 HET EDO B 205 4 HET EDO B 207 4 HET EDO B 208 4 HET PEG B 213 7 HET PEG B 214 7 HET PG4 B 217 13 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 4 EDO 10(C2 H6 O2) FORMUL 10 PEG 3(C4 H10 O3) FORMUL 11 PG4 3(C8 H18 O5) FORMUL 21 HOH *124(H2 O) HELIX 1 1 THR A 8 GLN A 24 1 17 HELIX 2 2 SER A 30 GLY A 39 1 10 HELIX 3 3 ALA A 41 PHE A 49 1 9 HELIX 4 4 SER A 51 SER A 74 1 24 HELIX 5 5 ASP A 80 ASN A 99 1 20 HELIX 6 6 ASN A 99 SER A 110 1 12 HELIX 7 7 GLU A 116 GLY A 126 1 11 HELIX 8 8 LEU A 128 SER A 141 1 14 HELIX 9 9 PRO A 148 HIS A 170 1 23 HELIX 10 10 PRO A 171 GLN A 175 5 5 HELIX 11 11 GLN A 176 ALA A 192 1 17 HELIX 12 12 THR B 8 GLN B 24 1 17 HELIX 13 13 SER B 30 GLY B 39 1 10 HELIX 14 14 ALA B 41 PHE B 49 1 9 HELIX 15 15 SER B 51 SER B 74 1 24 HELIX 16 16 ASP B 80 ASN B 99 1 20 HELIX 17 17 ASN B 99 SER B 110 1 12 HELIX 18 18 GLU B 116 GLY B 126 1 11 HELIX 19 19 LEU B 128 SER B 141 1 14 HELIX 20 20 PRO B 148 HIS B 170 1 23 HELIX 21 21 PRO B 171 GLN B 175 5 5 HELIX 22 22 GLN B 176 ALA B 192 1 17 LINK C ALA A 96 N MSE A 97 1555 1555 1.35 LINK C MSE A 97 N ALA A 98 1555 1555 1.35 LINK C SER A 110 N MSE A 111 1555 1555 1.33 LINK C MSE A 111 N SER A 112 1555 1555 1.34 LINK C ALA A 123 N MSE A 124 1555 1555 1.35 LINK C MSE A 124 N HIS A 125 1555 1555 1.34 LINK C LEU A 151 N MSE A 152 1555 1555 1.34 LINK C MSE A 152 N GLN A 153 1555 1555 1.37 LINK C ALA A 190 N MSE A 191 1555 1555 1.35 LINK C MSE A 191 N ALA A 192 1555 1555 1.36 LINK C ALA B 96 N MSE B 97 1555 1555 1.34 LINK C MSE B 97 N ALA B 98 1555 1555 1.34 LINK C SER B 110 N MSE B 111 1555 1555 1.34 LINK C MSE B 111 N SER B 112 1555 1555 1.33 LINK C ALA B 123 N MSE B 124 1555 1555 1.34 LINK C MSE B 124 N HIS B 125 1555 1555 1.35 LINK C LEU B 151 N MSE B 152 1555 1555 1.34 LINK C MSE B 152 N GLN B 153 1555 1555 1.34 LINK C ALA B 190 N MSE B 191 1555 1555 1.33 LINK C MSE B 191 N ALA B 192 1555 1555 1.36 SITE 1 AC1 3 ASN A 99 LEU A 101 LYS A 102 SITE 1 AC2 7 LYS A 64 PHE A 106 SER A 110 LEU A 128 SITE 2 AC2 7 HIS A 157 TYR A 160 PG4 A 216 SITE 1 AC3 6 HIS A 27 THR A 114 PEG A 215 VAL B 22 SITE 2 AC3 6 GLY B 25 LEU B 108 SITE 1 AC4 3 GLN A 107 GLN B 107 MSE B 111 SITE 1 AC5 2 GLU A 66 TRP A 95 SITE 1 AC6 2 GLU A 66 LYS A 102 SITE 1 AC7 5 GLU A 53 GLU A 57 THR A 114 VAL A 115 SITE 2 AC7 5 GLU A 116 SITE 1 AC8 11 GLN A 24 GLY A 25 PHE A 26 HIS A 27 SITE 2 AC8 11 GLY A 28 TYR A 109 EDO A 206 GLY B 25 SITE 3 AC8 11 PHE B 26 HIS B 27 GLY B 28 SITE 1 AC9 7 LEU A 88 ILE A 131 HIS A 157 PHE A 187 SITE 2 AC9 7 MSE A 191 EDO A 203 HOH A 333 SITE 1 BC1 6 PHE A 90 TRP A 174 GLN A 175 ALA A 177 SITE 2 BC1 6 ARG A 180 SER A 181 SITE 1 BC2 3 ASN B 99 LEU B 101 LYS B 102 SITE 1 BC3 3 GLN B 11 GLY B 62 GLU B 66 SITE 1 BC4 7 LYS B 64 PHE B 67 PHE B 106 SER B 110 SITE 2 BC4 7 LEU B 128 HIS B 157 PG4 B 217 SITE 1 BC5 6 GLN A 175 PHE B 46 SER B 51 LYS B 52 SITE 2 BC5 6 GLU B 53 HOH B 290 SITE 1 BC6 6 GLN A 175 ALA A 177 HOH A 235 LYS B 82 SITE 2 BC6 6 ASN B 189 HOH B 300 SITE 1 BC7 5 PHE B 90 ARG B 180 SER B 181 HOH B 315 SITE 2 BC7 5 HOH B 341 SITE 1 BC8 4 SER B 74 ALA B 91 THR B 94 TRP B 95 SITE 1 BC9 6 ILE B 131 GLN B 153 TYR B 160 PHE B 187 SITE 2 BC9 6 EDO B 205 HOH B 334 CRYST1 57.762 60.042 107.734 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017312 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009282 0.00000