HEADER TRANSCRIPTION REGULATOR 24-NOV-10 3PPB
TITLE CRYSTAL STRUCTURE OF A PUTATIVE TETR FAMILY TRANSCRIPTION REGULATOR
TITLE 2 (SHEW_3104) FROM SHEWANELLA SP. PV-4 AT 2.10 A RESOLUTION
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PUTATIVE TETR FAMILY TRANSCRIPTION REGULATOR;
COMPND 3 CHAIN: A, B;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA LOIHICA;
SOURCE 3 ORGANISM_TAXID: 323850;
SOURCE 4 STRAIN: PV-4;
SOURCE 5 GENE: SHEW_3104;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET
KEYWDS DNA-BINDING, HELIX-TURN-HELIX MOTIF, HTH MOTIF, DNA/RNA-BINDING 3-
KEYWDS 2 HELICAL BUNDLE FOLD, TETRACYCLIN REPRESSOR-LIKE FOLD, TRANSCRIPTION,
KEYWDS 3 TRANSCRIPTION REGULATION, TRANSCRIPTION REGULATOR, STRUCTURAL
KEYWDS 4 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN
KEYWDS 5 STRUCTURE INITIATIVE, PSI
EXPDTA X-RAY DIFFRACTION
AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG)
REVDAT 4 20-NOV-24 3PPB 1 REMARK
REVDAT 3 01-FEB-23 3PPB 1 REMARK SEQADV LINK
REVDAT 2 20-JUL-11 3PPB 1 KEYWDS
REVDAT 1 29-DEC-10 3PPB 0
JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG)
JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE TETR FAMILY TRANSCRIPTION
JRNL TITL 2 REGULATOR (SHEW_3104) FROM SHEWANELLA SP. PV-4 AT 2.10 A
JRNL TITL 3 RESOLUTION
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.8.0
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.92
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : NULL
REMARK 3 NUMBER OF REFLECTIONS : 22520
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.176
REMARK 3 R VALUE (WORKING SET) : 0.174
REMARK 3 FREE R VALUE : 0.209
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120
REMARK 3 FREE R VALUE TEST SET COUNT : 1152
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 11
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.20
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2962
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2098
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2816
REMARK 3 BIN R VALUE (WORKING SET) : 0.2079
REMARK 3 BIN FREE R VALUE : 0.2466
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.93
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2960
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 102
REMARK 3 SOLVENT ATOMS : 124
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.43
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -5.06430
REMARK 3 B22 (A**2) : 0.54590
REMARK 3 B33 (A**2) : 4.51840
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3201 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4309 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1501 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 87 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 472 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3201 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 403 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3830 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 0.91
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.77
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.78
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|7 - A|194 }
REMARK 3 ORIGIN FOR THE GROUP (A): 34.4551 0.0301 60.5398
REMARK 3 T TENSOR
REMARK 3 T11: 0.0079 T22: -0.0458
REMARK 3 T33: -0.1512 T12: 0.0194
REMARK 3 T13: 0.0173 T23: 0.0254
REMARK 3 L TENSOR
REMARK 3 L11: 1.2852 L22: 0.7012
REMARK 3 L33: 2.2597 L12: 0.0936
REMARK 3 L13: -0.0484 L23: -0.1066
REMARK 3 S TENSOR
REMARK 3 S11: 0.0496 S12: 0.2571 S13: -0.0392
REMARK 3 S21: -0.0926 S22: 0.0083 S23: -0.1589
REMARK 3 S31: -0.0098 S32: 0.1730 S33: -0.0579
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|7 - B|194 }
REMARK 3 ORIGIN FOR THE GROUP (A): 13.7411 -1.0823 66.2564
REMARK 3 T TENSOR
REMARK 3 T11: 0.0815 T22: -0.0921
REMARK 3 T33: -0.1115 T12: 0.0116
REMARK 3 T13: -0.0266 T23: -0.0060
REMARK 3 L TENSOR
REMARK 3 L11: 0.9401 L22: 0.3436
REMARK 3 L33: 2.4500 L12: 0.3334
REMARK 3 L13: 1.0408 L23: -0.1279
REMARK 3 S TENSOR
REMARK 3 S11: 0.0160 S12: -0.0482 S13: 0.0076
REMARK 3 S21: -0.0374 S22: 0.0207 S23: 0.1159
REMARK 3 S31: -0.0877 S32: -0.0762 S33: -0.0367
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED
REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION.
REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO
REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET
REMARK 3 INCORPORATION. 2. NCS RESTRAINTS WERE APPLIED USING BUSTER'S
REMARK 3 LSSR RESTRAINT REPRESENTATION (-AUTONCS). 3. ATOM RECORD
REMARK 3 CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD
REMARK 3 CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. CHLORIDE (CL) AND
REMARK 3 PEG-400 FRAGMENTS (PEG AND PG4) FROM THE CRYSTALLIZATION
REMARK 3 SOLUTION AND 1,2-ETHANEDIOL (EDO) FROM THE CRYOPROTECTANT HAVE
REMARK 3 BEEN MODELED IN THE SOLVENT STRUCTURE. 5. THE SAD PHASES WERE
REMARK 3 INCLUDED AS ADDITIONAL REFINEMENT RESTRAINTS.
REMARK 4
REMARK 4 3PPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-10.
REMARK 100 THE DEPOSITION ID IS D_1000062653.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 22-JUL-10
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRL
REMARK 200 BEAMLINE : BL9-2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97903
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR
REMARK 200 SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22569
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100
REMARK 200 RESOLUTION RANGE LOW (A) : 28.919
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 4.800
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.11900
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 4.90
REMARK 200 R MERGE FOR SHELL (I) : 0.82100
REMARK 200 R SYM FOR SHELL (I) : 0.82100
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD
REMARK 200 SOFTWARE USED: SOLVE
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 41.83
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 30.0% PEG-400, 0.1M HEPES
REMARK 280 PH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.88100
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.86700
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.02100
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.86700
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.88100
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.02100
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUPPORTS THE ASSIGNMENT OF A DIMER
REMARK 300 AS THE SIGNIFICANT OLIGOMERIC FORM.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 7860 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 15980 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 0
REMARK 465 MSE A 1
REMARK 465 THR A 2
REMARK 465 ALA A 3
REMARK 465 SER A 4
REMARK 465 SER A 5
REMARK 465 LYS A 6
REMARK 465 GLY B 0
REMARK 465 MSE B 1
REMARK 465 THR B 2
REMARK 465 ALA B 3
REMARK 465 SER B 4
REMARK 465 SER B 5
REMARK 465 LYS B 6
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2
REMARK 470 GLN A 19 CD OE1 NE2
REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2
REMARK 470 ARG B 7 CG CD NE CZ NH1 NH2
REMARK 470 GLN B 19 CD OE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER B 76 79.12 -113.65
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 209
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 210
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 211
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 212
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 215
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 216
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 218
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 204
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 205
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 207
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 208
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 213
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 214
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 217
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 399313 RELATED DB: TARGETDB
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG
REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING
REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
DBREF 3PPB A 1 194 UNP A3QHM2 A3QHM2_SHELP 1 194
DBREF 3PPB B 1 194 UNP A3QHM2 A3QHM2_SHELP 1 194
SEQADV 3PPB GLY A 0 UNP A3QHM2 EXPRESSION TAG
SEQADV 3PPB GLY B 0 UNP A3QHM2 EXPRESSION TAG
SEQRES 1 A 195 GLY MSE THR ALA SER SER LYS ARG THR LYS LYS GLN ALA
SEQRES 2 A 195 ILE LEU GLU THR ALA LEU GLN LEU PHE VAL SER GLN GLY
SEQRES 3 A 195 PHE HIS GLY THR SER THR ALA THR ILE ALA ARG GLU ALA
SEQRES 4 A 195 GLY VAL ALA THR GLY THR LEU PHE HIS HIS PHE PRO SER
SEQRES 5 A 195 LYS GLU GLN LEU LEU GLU GLN LEU PHE LEU GLY VAL LYS
SEQRES 6 A 195 GLN GLU PHE ALA ASP ALA ILE GLN ALA SER VAL SER SER
SEQRES 7 A 195 ARG GLY ASP LEU LYS GLN ASP ALA GLU GLN LEU TRP PHE
SEQRES 8 A 195 ALA ALA LEU THR TRP ALA MSE ALA ASN PRO LEU LYS GLN
SEQRES 9 A 195 ALA PHE PHE GLN LEU TYR SER MSE SER PRO THR VAL GLU
SEQRES 10 A 195 GLN SER VAL ARG ASP GLN ALA MSE HIS GLY ILE LEU GLY
SEQRES 11 A 195 PHE ILE ALA GLU LEU ILE ARG GLN GLY GLN ALA SER GLY
SEQRES 12 A 195 GLU LEU ALA GLU TYR PRO ILE GLU LEU MSE GLN ASP ASN
SEQRES 13 A 195 CYS HIS GLY GLN TYR LEU ALA ALA THR ARG TYR PHE VAL
SEQRES 14 A 195 ASP HIS PRO GLU ARG TRP GLN GLN ALA HIS GLU ARG SER
SEQRES 15 A 195 ALA SER PHE ALA LEU PHE TRP ASN ALA MSE ALA VAL ARG
SEQRES 1 B 195 GLY MSE THR ALA SER SER LYS ARG THR LYS LYS GLN ALA
SEQRES 2 B 195 ILE LEU GLU THR ALA LEU GLN LEU PHE VAL SER GLN GLY
SEQRES 3 B 195 PHE HIS GLY THR SER THR ALA THR ILE ALA ARG GLU ALA
SEQRES 4 B 195 GLY VAL ALA THR GLY THR LEU PHE HIS HIS PHE PRO SER
SEQRES 5 B 195 LYS GLU GLN LEU LEU GLU GLN LEU PHE LEU GLY VAL LYS
SEQRES 6 B 195 GLN GLU PHE ALA ASP ALA ILE GLN ALA SER VAL SER SER
SEQRES 7 B 195 ARG GLY ASP LEU LYS GLN ASP ALA GLU GLN LEU TRP PHE
SEQRES 8 B 195 ALA ALA LEU THR TRP ALA MSE ALA ASN PRO LEU LYS GLN
SEQRES 9 B 195 ALA PHE PHE GLN LEU TYR SER MSE SER PRO THR VAL GLU
SEQRES 10 B 195 GLN SER VAL ARG ASP GLN ALA MSE HIS GLY ILE LEU GLY
SEQRES 11 B 195 PHE ILE ALA GLU LEU ILE ARG GLN GLY GLN ALA SER GLY
SEQRES 12 B 195 GLU LEU ALA GLU TYR PRO ILE GLU LEU MSE GLN ASP ASN
SEQRES 13 B 195 CYS HIS GLY GLN TYR LEU ALA ALA THR ARG TYR PHE VAL
SEQRES 14 B 195 ASP HIS PRO GLU ARG TRP GLN GLN ALA HIS GLU ARG SER
SEQRES 15 B 195 ALA SER PHE ALA LEU PHE TRP ASN ALA MSE ALA VAL ARG
MODRES 3PPB MSE A 97 MET SELENOMETHIONINE
MODRES 3PPB MSE A 111 MET SELENOMETHIONINE
MODRES 3PPB MSE A 124 MET SELENOMETHIONINE
MODRES 3PPB MSE A 152 MET SELENOMETHIONINE
MODRES 3PPB MSE A 191 MET SELENOMETHIONINE
MODRES 3PPB MSE B 97 MET SELENOMETHIONINE
MODRES 3PPB MSE B 111 MET SELENOMETHIONINE
MODRES 3PPB MSE B 124 MET SELENOMETHIONINE
MODRES 3PPB MSE B 152 MET SELENOMETHIONINE
MODRES 3PPB MSE B 191 MET SELENOMETHIONINE
HET MSE A 97 8
HET MSE A 111 8
HET MSE A 124 8
HET MSE A 152 8
HET MSE A 191 13
HET MSE B 97 8
HET MSE B 111 8
HET MSE B 124 8
HET MSE B 152 8
HET MSE B 191 13
HET CL A 201 1
HET EDO A 203 4
HET EDO A 206 4
HET EDO A 209 4
HET EDO A 210 4
HET EDO A 211 4
HET EDO A 212 4
HET PEG A 215 7
HET PG4 A 216 13
HET PG4 A 218 13
HET CL B 202 1
HET EDO B 204 4
HET EDO B 205 4
HET EDO B 207 4
HET EDO B 208 4
HET PEG B 213 7
HET PEG B 214 7
HET PG4 B 217 13
HETNAM MSE SELENOMETHIONINE
HETNAM CL CHLORIDE ION
HETNAM EDO 1,2-ETHANEDIOL
HETNAM PEG DI(HYDROXYETHYL)ETHER
HETNAM PG4 TETRAETHYLENE GLYCOL
HETSYN EDO ETHYLENE GLYCOL
FORMUL 1 MSE 10(C5 H11 N O2 SE)
FORMUL 3 CL 2(CL 1-)
FORMUL 4 EDO 10(C2 H6 O2)
FORMUL 10 PEG 3(C4 H10 O3)
FORMUL 11 PG4 3(C8 H18 O5)
FORMUL 21 HOH *124(H2 O)
HELIX 1 1 THR A 8 GLN A 24 1 17
HELIX 2 2 SER A 30 GLY A 39 1 10
HELIX 3 3 ALA A 41 PHE A 49 1 9
HELIX 4 4 SER A 51 SER A 74 1 24
HELIX 5 5 ASP A 80 ASN A 99 1 20
HELIX 6 6 ASN A 99 SER A 110 1 12
HELIX 7 7 GLU A 116 GLY A 126 1 11
HELIX 8 8 LEU A 128 SER A 141 1 14
HELIX 9 9 PRO A 148 HIS A 170 1 23
HELIX 10 10 PRO A 171 GLN A 175 5 5
HELIX 11 11 GLN A 176 ALA A 192 1 17
HELIX 12 12 THR B 8 GLN B 24 1 17
HELIX 13 13 SER B 30 GLY B 39 1 10
HELIX 14 14 ALA B 41 PHE B 49 1 9
HELIX 15 15 SER B 51 SER B 74 1 24
HELIX 16 16 ASP B 80 ASN B 99 1 20
HELIX 17 17 ASN B 99 SER B 110 1 12
HELIX 18 18 GLU B 116 GLY B 126 1 11
HELIX 19 19 LEU B 128 SER B 141 1 14
HELIX 20 20 PRO B 148 HIS B 170 1 23
HELIX 21 21 PRO B 171 GLN B 175 5 5
HELIX 22 22 GLN B 176 ALA B 192 1 17
LINK C ALA A 96 N MSE A 97 1555 1555 1.35
LINK C MSE A 97 N ALA A 98 1555 1555 1.35
LINK C SER A 110 N MSE A 111 1555 1555 1.33
LINK C MSE A 111 N SER A 112 1555 1555 1.34
LINK C ALA A 123 N MSE A 124 1555 1555 1.35
LINK C MSE A 124 N HIS A 125 1555 1555 1.34
LINK C LEU A 151 N MSE A 152 1555 1555 1.34
LINK C MSE A 152 N GLN A 153 1555 1555 1.37
LINK C ALA A 190 N MSE A 191 1555 1555 1.35
LINK C MSE A 191 N ALA A 192 1555 1555 1.36
LINK C ALA B 96 N MSE B 97 1555 1555 1.34
LINK C MSE B 97 N ALA B 98 1555 1555 1.34
LINK C SER B 110 N MSE B 111 1555 1555 1.34
LINK C MSE B 111 N SER B 112 1555 1555 1.33
LINK C ALA B 123 N MSE B 124 1555 1555 1.34
LINK C MSE B 124 N HIS B 125 1555 1555 1.35
LINK C LEU B 151 N MSE B 152 1555 1555 1.34
LINK C MSE B 152 N GLN B 153 1555 1555 1.34
LINK C ALA B 190 N MSE B 191 1555 1555 1.33
LINK C MSE B 191 N ALA B 192 1555 1555 1.36
SITE 1 AC1 3 ASN A 99 LEU A 101 LYS A 102
SITE 1 AC2 7 LYS A 64 PHE A 106 SER A 110 LEU A 128
SITE 2 AC2 7 HIS A 157 TYR A 160 PG4 A 216
SITE 1 AC3 6 HIS A 27 THR A 114 PEG A 215 VAL B 22
SITE 2 AC3 6 GLY B 25 LEU B 108
SITE 1 AC4 3 GLN A 107 GLN B 107 MSE B 111
SITE 1 AC5 2 GLU A 66 TRP A 95
SITE 1 AC6 2 GLU A 66 LYS A 102
SITE 1 AC7 5 GLU A 53 GLU A 57 THR A 114 VAL A 115
SITE 2 AC7 5 GLU A 116
SITE 1 AC8 11 GLN A 24 GLY A 25 PHE A 26 HIS A 27
SITE 2 AC8 11 GLY A 28 TYR A 109 EDO A 206 GLY B 25
SITE 3 AC8 11 PHE B 26 HIS B 27 GLY B 28
SITE 1 AC9 7 LEU A 88 ILE A 131 HIS A 157 PHE A 187
SITE 2 AC9 7 MSE A 191 EDO A 203 HOH A 333
SITE 1 BC1 6 PHE A 90 TRP A 174 GLN A 175 ALA A 177
SITE 2 BC1 6 ARG A 180 SER A 181
SITE 1 BC2 3 ASN B 99 LEU B 101 LYS B 102
SITE 1 BC3 3 GLN B 11 GLY B 62 GLU B 66
SITE 1 BC4 7 LYS B 64 PHE B 67 PHE B 106 SER B 110
SITE 2 BC4 7 LEU B 128 HIS B 157 PG4 B 217
SITE 1 BC5 6 GLN A 175 PHE B 46 SER B 51 LYS B 52
SITE 2 BC5 6 GLU B 53 HOH B 290
SITE 1 BC6 6 GLN A 175 ALA A 177 HOH A 235 LYS B 82
SITE 2 BC6 6 ASN B 189 HOH B 300
SITE 1 BC7 5 PHE B 90 ARG B 180 SER B 181 HOH B 315
SITE 2 BC7 5 HOH B 341
SITE 1 BC8 4 SER B 74 ALA B 91 THR B 94 TRP B 95
SITE 1 BC9 6 ILE B 131 GLN B 153 TYR B 160 PHE B 187
SITE 2 BC9 6 EDO B 205 HOH B 334
CRYST1 57.762 60.042 107.734 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017312 0.000000 0.000000 0.00000
SCALE2 0.000000 0.016655 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009282 0.00000