HEADER VIRAL PROTEIN 26-NOV-10 3PQI TITLE CRYSTAL STRUCTURE OF THE BACTERIOPHAGE PHI92 MEMBRANE-PIERCING PROTEIN TITLE 2 GP138 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENE PRODUCT 138; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTERIOPHAGE PHI92; SOURCE 3 ORGANISM_TAXID: 38018; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: 834 (DE3) KEYWDS BETA-HELIX, OB-FOLD, PHAGE BASEPLATE, IRON-BINDING, CELL MEMBRANE KEYWDS 2 PIERCING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.BROWNING,M.SHNEIDER,P.G.LEIMAN REVDAT 3 08-NOV-17 3PQI 1 REMARK REVDAT 2 29-FEB-12 3PQI 1 JRNL REVDAT 1 22-FEB-12 3PQI 0 JRNL AUTH C.BROWNING,M.M.SHNEIDER,V.D.BOWMAN,D.SCHWARZER,P.G.LEIMAN JRNL TITL PHAGE PIERCES THE HOST CELL MEMBRANE WITH THE IRON-LOADED JRNL TITL 2 SPIKE. JRNL REF STRUCTURE V. 20 326 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22325780 JRNL DOI 10.1016/J.STR.2011.12.009 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.940 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 8279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.6189 - 3.8102 0.99 2724 144 0.2070 0.2203 REMARK 3 2 3.8102 - 3.0243 0.99 2591 137 0.2025 0.2965 REMARK 3 3 3.0243 - 2.6420 0.99 2549 134 0.2377 0.2801 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 44.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.41620 REMARK 3 B22 (A**2) : -10.41620 REMARK 3 B33 (A**2) : 20.83240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1508 REMARK 3 ANGLE : 0.794 2048 REMARK 3 CHIRALITY : 0.054 244 REMARK 3 PLANARITY : 0.003 265 REMARK 3 DIHEDRAL : 12.711 540 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 22:58) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0523 2.2521 134.8102 REMARK 3 T TENSOR REMARK 3 T11: 0.6584 T22: 0.5830 REMARK 3 T33: 0.7345 T12: -0.0487 REMARK 3 T13: 0.1481 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.1967 L22: 0.3762 REMARK 3 L33: 0.3554 L12: 0.0205 REMARK 3 L13: 0.0759 L23: 0.3871 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.5406 S13: 0.2650 REMARK 3 S21: 0.2055 S22: 0.3866 S23: 0.2148 REMARK 3 S31: -0.4045 S32: -0.1445 S33: 0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 59:70) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1583 6.9667 130.1767 REMARK 3 T TENSOR REMARK 3 T11: 0.5775 T22: 0.3571 REMARK 3 T33: 0.8705 T12: -0.0355 REMARK 3 T13: 0.1542 T23: -0.1421 REMARK 3 L TENSOR REMARK 3 L11: 1.1496 L22: 0.0988 REMARK 3 L33: 0.2486 L12: -0.0578 REMARK 3 L13: 0.4254 L23: -0.1361 REMARK 3 S TENSOR REMARK 3 S11: 0.1514 S12: 0.3484 S13: 0.1473 REMARK 3 S21: -0.1262 S22: -0.4021 S23: 0.4743 REMARK 3 S31: -0.0401 S32: -0.0499 S33: -0.0749 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 71:144) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3390 -1.1173 124.5565 REMARK 3 T TENSOR REMARK 3 T11: 0.4020 T22: 0.4063 REMARK 3 T33: 0.6382 T12: -0.0573 REMARK 3 T13: 0.0639 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.7560 L22: 0.4443 REMARK 3 L33: 0.6583 L12: 0.0511 REMARK 3 L13: -0.0989 L23: -0.5512 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: -0.1639 S13: 0.1584 REMARK 3 S21: 0.4788 S22: -0.1807 S23: 0.0243 REMARK 3 S31: 0.0911 S32: -0.0231 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 145:243) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2206 -4.9859 81.9601 REMARK 3 T TENSOR REMARK 3 T11: 0.2729 T22: 0.2747 REMARK 3 T33: 0.2337 T12: -0.0282 REMARK 3 T13: -0.0826 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.6985 L22: 0.6705 REMARK 3 L33: 0.5903 L12: -0.2114 REMARK 3 L13: -0.3278 L23: -0.0642 REMARK 3 S TENSOR REMARK 3 S11: 0.0616 S12: 0.1775 S13: -0.1403 REMARK 3 S21: -0.1575 S22: 0.0225 S23: 0.0907 REMARK 3 S31: 0.1705 S32: -0.2222 S33: -0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000062696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8304 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 55.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : 0.46900 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML 10% - 12% PEG 2K 100MM - REMARK 280 200MM MGCL2 100MM TRIS PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K. 10 MG/ML 10% - 12% PEG 2K 250MM KCL 50MM TRIS REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 32.57200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 18.80545 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 109.79167 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 32.57200 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 18.80545 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 109.79167 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 32.57200 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 18.80545 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 109.79167 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 32.57200 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 18.80545 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 109.79167 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 32.57200 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 18.80545 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 109.79167 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 32.57200 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 18.80545 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 109.79167 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 37.61091 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 219.58333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 37.61091 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 219.58333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 37.61091 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 219.58333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 37.61091 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 219.58333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 37.61091 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 219.58333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 37.61091 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 219.58333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -182.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 FE FE A 246 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 272 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 280 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 ASN A 5 REMARK 465 PHE A 6 REMARK 465 VAL A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 ILE A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 ILE A 14 REMARK 465 ASN A 15 REMARK 465 GLU A 16 REMARK 465 GLN A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 VAL A 21 REMARK 465 ARG A 49 REMARK 465 SER A 50 REMARK 465 THR A 51 REMARK 465 GLU A 52 REMARK 465 ASP A 53 REMARK 465 GLU A 91 REMARK 465 ARG A 92 REMARK 465 ASP A 93 REMARK 465 PRO A 94 REMARK 465 SER A 95 REMARK 465 ASN A 96 REMARK 465 ALA A 97 REMARK 465 PHE A 98 REMARK 465 GLN A 99 REMARK 465 THR A 100 REMARK 465 ASP A 101 REMARK 465 GLY A 102 REMARK 465 ASP A 103 REMARK 465 THR A 104 REMARK 465 ALA A 105 REMARK 465 GLY A 244 REMARK 465 GLY A 245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 55 -55.83 112.60 REMARK 500 ASP A 56 -66.21 84.93 REMARK 500 PHE A 89 -148.67 -167.04 REMARK 500 LYS A 124 77.99 -110.57 REMARK 500 LYS A 146 29.44 44.62 REMARK 500 ALA A 180 -8.87 -51.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 246 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 223 NE2 REMARK 620 2 HIS A 225 NE2 92.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 246 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PQH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C TERMINAL FRAGMENT OF BACTERIOPHAGE GP138 REMARK 900 MEMBRANE-PIERCING PROTEIN DBREF 3PQI A -1 245 PDB 3PQI 3PQI -1 245 SEQRES 1 A 247 GLY SER MET ASP ALA LEU ASN PHE VAL THR ALA ILE ARG SEQRES 2 A 247 GLY LEU ILE ASN GLU GLN VAL ALA GLU VAL HIS THR SER SEQRES 3 A 247 LEU PRO VAL ARG VAL ILE GLY VAL ASP TYR GLY SER LYS SEQRES 4 A 247 THR VAL THR LEU GLU SER ILE VAL LYS ASN THR ARG SER SEQRES 5 A 247 THR GLU ASP GLU ILE ASP TYR PRO THR PHE HIS ASP VAL SEQRES 6 A 247 PRO PHE MET VAL ASN GLY GLY GLY THR GLY ARG ILE SER SEQRES 7 A 247 PHE PRO ILE LYS ALA GLY ASP ILE GLY VAL VAL VAL PHE SEQRES 8 A 247 SER GLU ARG ASP PRO SER ASN ALA PHE GLN THR ASP GLY SEQRES 9 A 247 ASP THR ALA SER SER GLY THR LEU ILE GLN PRO CYS GLY SEQRES 10 A 247 LEU TYR PRO ALA CYS PHE ILE PRO LYS ILE ALA THR ALA SEQRES 11 A 247 THR ASP SER SER GLU GLU VAL ASP SER GLU LYS VAL ILE SEQRES 12 A 247 ILE SER ASN ASN LYS GLN THR TYR ALA SER PHE ASP PRO SEQRES 13 A 247 ASN GLY ASN ILE SER VAL TYR ASN THR GLN GLY MET LYS SEQRES 14 A 247 ILE ASP MET THR PRO ASN SER ILE VAL LEU THR ASP ALA SEQRES 15 A 247 GLY GLY GLY LYS LEU THR LEU GLN GLY GLY THR MET THR SEQRES 16 A 247 TYR LYS GLY GLY THR VAL ASN LEU ASN GLY LEU THR ILE SEQRES 17 A 247 THR PRO ASP GLY ARG MET THR ASP SER GLY GLY ILE GLY SEQRES 18 A 247 LEU HIS THR HIS THR HIS PRO VAL ARG GLY VAL GLU THR SEQRES 19 A 247 GLY GLY SER THR VAL THR SER ASP LYS PRO ASN GLY GLY HET FE A 246 1 HET K A 248 1 HETNAM FE FE (III) ION HETNAM K POTASSIUM ION FORMUL 2 FE FE 3+ FORMUL 3 K K 1+ FORMUL 4 HOH *39(H2 O) SHEET 1 A 5 THR A 59 PRO A 64 0 SHEET 2 A 5 THR A 38 SER A 43 -1 N VAL A 39 O VAL A 63 SHEET 3 A 5 THR A 23 ASP A 33 -1 N ASP A 33 O THR A 38 SHEET 4 A 5 ILE A 84 PHE A 89 -1 O PHE A 89 N THR A 23 SHEET 5 A 5 CYS A 120 PRO A 123 -1 O ILE A 122 N VAL A 86 SHEET 1 B 2 ASN A 68 GLY A 70 0 SHEET 2 B 2 GLY A 73 ILE A 75 -1 O ILE A 75 N ASN A 68 SHEET 1 C 7 VAL A 140 ASN A 144 0 SHEET 2 C 7 THR A 148 PHE A 152 -1 O ALA A 150 N ILE A 142 SHEET 3 C 7 ILE A 158 ASN A 162 -1 O SER A 159 N SER A 151 SHEET 4 C 7 LYS A 167 THR A 171 -1 O MET A 170 N ILE A 158 SHEET 5 C 7 SER A 174 ASP A 179 -1 O THR A 178 N LYS A 167 SHEET 6 C 7 GLY A 183 GLN A 188 -1 O LEU A 185 N LEU A 177 SHEET 7 C 7 THR A 191 LYS A 195 -1 O THR A 193 N THR A 186 SHEET 1 D 3 VAL A 199 LEU A 201 0 SHEET 2 D 3 LEU A 204 ILE A 206 -1 O LEU A 204 N LEU A 201 SHEET 3 D 3 MET A 212 THR A 213 -1 O THR A 213 N THR A 205 SSBOND 1 CYS A 114 CYS A 120 1555 1555 2.05 LINK NE2 HIS A 223 FE FE A 246 1555 1555 2.36 LINK NE2 HIS A 225 FE FE A 246 1555 1555 2.43 CISPEP 1 GLY A 108 THR A 109 0 -0.80 SITE 1 AC1 2 HIS A 223 HIS A 225 CRYST1 65.144 65.144 329.375 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015351 0.008863 0.000000 0.00000 SCALE2 0.000000 0.017725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003036 0.00000